Wall clock time and date at job start Tue Mar 31 2020 08:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 120.00000 * 2 1 4 4 H 1.48495 * 109.47171 * 269.99760 * 3 2 1 5 5 H 1.48503 * 109.46735 * 29.99869 * 3 2 1 6 6 H 1.48496 * 109.47012 * 149.99462 * 3 2 1 7 7 C 1.39950 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99624 * 197.86349 * 7 2 1 9 9 C 1.41390 * 119.99765 * 17.85897 * 7 2 1 10 10 C 1.40714 * 120.24828 * 24.39125 * 9 7 2 11 11 C 1.37617 * 119.74722 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24511 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.74492 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.46484 * 90.00182 * 13 12 11 15 15 C 1.47904 * 111.00090 * 52.60381 * 14 13 12 16 16 C 1.53997 * 107.05819 * 145.84070 * 15 14 13 17 17 C 1.54595 * 105.13981 * 358.77645 * 16 15 14 18 18 H 1.09001 * 110.72670 * 96.39779 * 17 16 15 19 19 C 1.53005 * 110.72493 * 219.68534 * 17 16 15 20 20 O 1.43746 * 109.63073 * 52.86034 * 19 17 16 21 21 C 1.44785 * 104.81739 * 215.81006 * 20 19 17 22 22 C 1.54910 * 101.72215 * 36.10721 * 21 20 19 23 23 O 1.43370 * 109.62767 * 293.49934 * 19 17 16 24 24 C 1.48536 * 110.99864 * 169.99732 * 14 13 12 25 25 C 1.38632 * 120.50563 * 0.25067 * 12 11 10 26 26 C 1.37625 * 120.24490 * 359.44898 * 25 12 11 27 27 H 0.97006 * 120.00104 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.12338 * 359.97438 * 10 9 7 29 29 H 1.07992 * 119.87536 * 179.97438 * 11 10 9 30 30 H 1.08996 * 109.47132 * 330.00711 * 13 12 11 31 31 H 1.08997 * 109.46727 * 209.99939 * 13 12 11 32 32 H 1.08999 * 109.91924 * 26.49204 * 15 14 13 33 33 H 1.08993 * 109.91543 * 265.19408 * 15 14 13 34 34 H 1.08997 * 110.30694 * 239.85684 * 16 15 14 35 35 H 1.09000 * 110.30681 * 117.68840 * 16 15 14 36 36 H 1.08998 * 109.62828 * 173.10614 * 19 17 16 37 37 H 1.08997 * 110.97470 * 277.99701 * 21 20 19 38 38 H 1.08997 * 111.00835 * 154.23293 * 21 20 19 39 39 H 1.08999 * 110.69711 * 206.04254 * 22 21 20 40 40 H 1.08995 * 110.84661 * 82.90144 * 22 21 20 41 41 H 1.09003 * 110.66726 * 81.84458 * 24 14 13 42 42 H 1.09005 * 110.66779 * 318.71756 * 24 14 13 43 43 H 1.08001 * 119.87669 * 179.70364 * 25 12 11 44 44 H 1.07995 * 120.12344 * 180.28007 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3520 -2.4071 -0.3744 10 6 0.2209 -2.3627 -1.2103 11 6 -0.4099 -3.5322 -1.5684 12 6 0.0649 -4.7508 -1.1084 13 6 -0.6349 -6.0246 -1.5072 14 7 -0.0438 -6.5395 -2.7495 15 6 1.4254 -6.6583 -2.6281 16 6 1.8490 -7.8876 -3.4532 17 6 0.5321 -8.4686 -4.0173 18 1 0.3564 -8.1116 -5.0321 19 6 0.5534 -9.9979 -3.9758 20 8 0.8763 -10.4405 -2.6469 21 6 1.6815 -11.6286 -2.8377 22 6 2.4910 -11.2597 -4.1059 23 8 1.5497 -10.4904 -4.8815 24 6 -0.5375 -7.9087 -3.0463 25 6 1.1750 -4.8062 -0.2799 26 6 1.8253 -3.6498 0.0861 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1513 -1.4143 -1.5687 29 1 -1.2784 -3.5004 -2.2094 30 1 -1.6943 -5.8229 -1.6652 31 1 -0.5200 -6.7652 -0.7158 32 1 1.7014 -6.7995 -1.5831 33 1 1.9042 -5.7626 -3.0236 34 1 2.3427 -8.6200 -2.8145 35 1 2.5094 -7.5878 -4.2669 36 1 -0.4246 -10.3856 -4.2611 37 1 1.0533 -12.5013 -3.0158 38 1 2.3426 -11.7934 -1.9869 39 1 2.7919 -12.1577 -4.6456 40 1 3.3618 -10.6568 -3.8485 41 1 -1.5135 -7.8692 -3.5302 42 1 -0.5821 -8.5072 -2.1363 43 1 1.5334 -5.7607 0.0764 44 1 2.6926 -3.6956 0.7279 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719107317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:42 Heat of formation + Delta-G solvation = -82.646633 kcal Electronic energy + Delta-G solvation = -24618.513703 eV Core-core repulsion = 21113.547775 eV Total energy + Delta-G solvation = -3504.965928 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59856 -40.10811 -38.79295 -35.98578 -35.79274 -33.97123 -31.80567 -31.14452 -30.84806 -29.49499 -28.05988 -25.52802 -24.81147 -24.03001 -22.91230 -22.33778 -21.55984 -20.77773 -19.22511 -18.21014 -17.67012 -17.52032 -17.16357 -16.57864 -16.11143 -16.00351 -15.70925 -15.44674 -15.26297 -14.66972 -14.55958 -14.37837 -13.99603 -13.84931 -13.76349 -13.62511 -13.55389 -13.12938 -12.83494 -12.74316 -12.58226 -12.54032 -12.33654 -12.12610 -12.02684 -11.86953 -11.57038 -11.35251 -11.21997 -11.12414 -11.01115 -10.55329 -9.40565 -9.31154 -9.12813 -8.63523 -6.32961 0.94616 1.15150 1.37220 1.50601 1.51129 2.20522 2.48771 2.67491 2.91441 3.27445 3.60471 3.70620 3.75085 3.82143 3.92007 4.06159 4.19325 4.25750 4.32828 4.33615 4.45198 4.47806 4.57174 4.59055 4.60673 4.70223 4.76166 4.81593 4.83769 4.92903 4.99352 5.05623 5.12290 5.15075 5.17124 5.26997 5.38279 5.46876 5.71176 5.89620 6.05162 6.09010 6.10960 6.17674 6.29631 6.39089 6.71278 6.94678 7.04578 8.33557 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.034971 B = 0.002713 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.470600 B =10318.469118 C =10552.071837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.081 3.919 10 C -0.191 4.191 11 C -0.086 4.086 12 C -0.199 4.199 13 C 0.117 3.883 14 N -0.522 5.522 15 C 0.048 3.952 16 C -0.110 4.110 17 C -0.100 4.100 18 H 0.099 0.901 19 C 0.245 3.755 20 O -0.393 6.393 21 C 0.012 3.988 22 C 0.015 3.985 23 O -0.399 6.399 24 C 0.046 3.954 25 C -0.080 4.080 26 C -0.243 4.243 27 H 0.288 0.712 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.107 0.893 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 -20.624 -7.169 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.079 3.921 10 C -0.210 4.210 11 C -0.105 4.105 12 C -0.201 4.201 13 C -0.010 4.010 14 N -0.246 5.246 15 C -0.080 4.080 16 C -0.148 4.148 17 C -0.120 4.120 18 H 0.117 0.883 19 C 0.150 3.850 20 O -0.314 6.314 21 C -0.063 4.063 22 C -0.060 4.060 23 O -0.320 6.320 24 C -0.082 4.082 25 C -0.099 4.099 26 C -0.262 4.262 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.125 0.875 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.184 -19.969 -7.567 21.388 hybrid contribution 0.565 0.511 0.932 1.204 sum 1.749 -19.459 -6.634 20.633 Atomic orbital electron populations 1.69885 1.09009 1.30506 1.35747 1.26768 0.95506 1.04528 0.91229 0.85204 0.79074 0.75918 0.79496 1.18742 1.19112 1.18224 1.19830 0.98304 0.92640 1.42406 0.90846 1.17952 0.91908 0.93024 0.89266 1.21266 1.00319 0.97023 1.02428 1.20721 0.98644 0.92456 0.98630 1.19257 1.00656 0.93904 1.06253 1.20810 0.97897 0.92746 0.89516 1.64880 1.04976 1.21611 1.33126 1.22677 0.88999 0.97717 0.98642 1.22274 0.97290 0.96098 0.99182 1.22531 0.95614 0.93193 1.00635 0.88321 1.23934 0.92562 0.92438 0.76071 1.89254 1.71885 1.43797 1.26466 1.24615 0.93734 0.88501 0.99485 1.24403 0.92681 0.96827 0.92115 1.88879 1.39458 1.70565 1.33123 1.23190 0.98562 0.88292 0.98122 1.20623 0.95306 0.96383 0.97571 1.21119 1.04319 0.93231 1.07556 0.90159 0.88313 0.87961 0.90556 0.94739 0.94311 0.92989 0.90981 0.91201 0.88386 0.89015 0.85867 0.85885 0.90730 0.88961 0.93233 0.87472 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.51 10.95 21.83 0.24 -44.27 16 2 C 0.03 1.79 5.14 85.26 0.44 2.23 16 3 Si 0.98 39.33 29.60 68.60 2.03 41.36 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.50 -28.08 9.05 23.46 0.21 -27.87 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.08 4.54 5.57 -21.29 -0.12 4.42 16 10 C -0.19 -10.47 8.70 22.73 0.20 -10.27 16 11 C -0.09 -4.14 9.67 22.22 0.21 -3.93 16 12 C -0.20 -8.72 4.75 -19.67 -0.09 -8.81 16 13 C 0.12 4.16 5.18 85.56 0.44 4.60 16 14 N -0.52 -17.04 5.39 -887.55 -4.78 -21.83 16 15 C 0.05 1.56 5.36 86.45 0.46 2.02 16 16 C -0.11 -2.87 6.25 31.47 0.20 -2.67 16 17 C -0.10 -2.33 3.21 -9.59 -0.03 -2.36 16 18 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 19 C 0.25 4.81 3.72 71.98 0.27 5.08 16 20 O -0.39 -7.91 9.49 -126.22 -1.20 -9.11 16 21 C 0.01 0.15 7.95 72.63 0.58 0.73 16 22 C 0.02 0.20 8.07 72.63 0.59 0.78 16 23 O -0.40 -7.80 11.07 -126.22 -1.40 -9.20 16 24 C 0.05 1.17 5.96 86.65 0.52 1.69 16 25 C -0.08 -3.61 8.27 22.22 0.18 -3.43 16 26 C -0.24 -12.36 9.80 22.73 0.22 -12.14 16 27 H 0.29 13.99 8.30 -92.70 -0.77 13.22 16 28 H 0.10 5.68 6.15 -2.91 -0.02 5.66 16 29 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 30 H 0.08 2.57 8.08 -2.39 -0.02 2.55 16 31 H 0.03 1.17 7.83 -2.39 -0.02 1.15 16 32 H 0.04 1.33 5.82 -2.39 -0.01 1.31 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.80 7.01 -2.39 -0.02 1.78 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 1.29 7.15 -2.38 -0.02 1.28 16 43 H 0.11 4.24 7.07 -2.91 -0.02 4.22 16 44 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -63.86 349.19 0.15 -63.71 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.98 Total: 29.26 kcal Atomic # 6 Polarization: -54.21 SS G_CDS: 4.28 Total: -49.93 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -4.55 Total: -66.09 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -2.59 Total: -18.31 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -63.86 0.15 -63.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719107317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.940 kcal (2) G-P(sol) polarization free energy of solvation -63.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds