Wall clock time and date at job start Tue Mar 31 2020 08:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 115.55330 * 2 1 4 4 C 1.52997 * 117.49858 * 145.66864 * 2 1 3 5 5 N 1.46504 * 117.50073 * 214.98041 * 4 2 1 6 6 C 1.34778 * 119.99842 * 155.08401 * 5 4 2 7 7 O 1.21589 * 120.00313 * 0.02562 * 6 5 4 8 8 C 1.47534 * 119.99478 * 179.97438 * 6 5 4 9 9 C 1.39661 * 120.19917 * 359.97438 * 8 6 5 10 10 C 1.37833 * 119.91852 * 180.02562 * 9 8 6 11 11 C 1.38567 * 120.32258 * 0.02562 * 10 9 8 12 12 C 1.38030 * 120.40644 * 359.97438 * 11 10 9 13 13 C 1.38833 * 120.06609 * 0.02562 * 12 11 10 14 14 O 1.35524 * 120.15873 * 180.02562 * 13 12 11 15 15 C 1.34812 * 116.99811 * 354.39598 * 14 13 12 16 16 H 1.08001 * 120.00332 * 5.06482 * 15 14 13 17 17 C 1.38697 * 119.99775 * 185.06238 * 15 14 13 18 18 N 1.31519 * 119.99942 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99939 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46894 * 60.00638 * 19 17 15 21 21 H 1.48497 * 109.47098 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47291 * 300.00481 * 19 17 15 23 23 C 1.53000 * 60.03489 * 107.47721 * 4 2 1 24 24 C 1.52996 * 117.49805 * 107.49923 * 23 4 2 25 25 C 1.52992 * 117.49944 * 252.52567 * 23 4 2 26 26 H 1.08995 * 109.47020 * 325.72313 * 1 2 3 27 27 H 1.09003 * 109.46950 * 85.72188 * 1 2 3 28 28 H 1.09000 * 109.46923 * 205.72090 * 1 2 3 29 29 H 1.08997 * 109.47371 * 154.27343 * 3 2 1 30 30 H 1.08996 * 109.47151 * 274.28036 * 3 2 1 31 31 H 1.09001 * 109.47099 * 34.27550 * 3 2 1 32 32 H 1.09006 * 117.50068 * 359.97438 * 4 2 1 33 33 H 0.96996 * 119.99841 * 335.08842 * 5 4 2 34 34 H 1.07999 * 120.04020 * 0.03798 * 9 8 6 35 35 H 1.07997 * 119.83568 * 180.27843 * 10 9 8 36 36 H 1.08002 * 119.80018 * 179.97438 * 11 10 9 37 37 H 1.07994 * 119.96635 * 180.02562 * 12 11 10 38 38 H 0.97011 * 119.99626 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47217 * 111.39615 * 24 23 4 40 40 H 1.09003 * 109.47147 * 231.39719 * 24 23 4 41 41 H 1.09006 * 109.47221 * 351.39082 * 24 23 4 42 42 H 1.08996 * 109.47515 * 8.60586 * 25 23 4 43 43 H 1.08996 * 109.47430 * 128.61028 * 25 23 4 44 44 H 1.09006 * 109.46843 * 248.60476 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 6 2.2365 -1.1207 0.7654 5 7 3.4933 -0.7901 1.4418 6 6 3.8996 -1.5168 2.5016 7 8 3.2233 -2.4471 2.8961 8 6 5.1655 -1.1842 3.1823 9 6 5.9463 -0.1175 2.7316 10 6 7.1282 0.1878 3.3716 11 6 7.5472 -0.5590 4.4610 12 6 6.7860 -1.6160 4.9176 13 6 5.5926 -1.9381 4.2854 14 8 4.8436 -2.9752 4.7325 15 6 5.3674 -3.7270 5.7214 16 1 6.3047 -3.4433 6.1768 17 6 4.7027 -4.8649 6.1538 18 7 3.5615 -5.2107 5.5989 19 14 5.4289 -5.9071 7.5235 20 1 5.5670 -5.0838 8.7517 21 1 4.5325 -7.0589 7.7975 22 1 6.7646 -6.4072 7.1100 23 6 2.2367 -1.1222 -0.7646 24 6 3.5495 -0.7782 -1.4711 25 6 1.3589 -2.1577 -1.4702 26 1 -0.3633 0.8492 0.5788 27 1 -0.3633 0.0767 -1.0248 28 1 -0.3633 -0.9258 0.4460 29 1 3.1819 1.3088 0.4461 30 1 2.2775 1.7412 -1.0248 31 1 1.5806 2.0744 0.5788 32 1 1.6112 -1.8578 1.2693 33 1 4.0329 -0.0482 1.1268 34 1 5.6242 0.4675 1.8828 35 1 7.7287 1.0158 3.0248 36 1 8.4750 -0.3126 4.9559 37 1 7.1190 -2.1931 5.7676 38 1 3.0968 -6.0068 5.9012 39 1 3.9369 -1.6662 -1.9705 40 1 3.3710 0.0046 -2.2084 41 1 4.2758 -0.4276 -0.7378 42 1 0.7294 -2.6610 -0.7364 43 1 0.7297 -1.6589 -2.2073 44 1 1.9921 -2.8910 -1.9697 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752395875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:20 Heat of formation + Delta-G solvation = -14.564195 kcal Electronic energy + Delta-G solvation = -25054.250144 eV Core-core repulsion = 21552.236492 eV Total energy + Delta-G solvation = -3502.013652 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13399 -39.14484 -37.48079 -36.32512 -33.03547 -32.33160 -31.18827 -30.40098 -28.92777 -28.64076 -26.87891 -26.31074 -25.36018 -23.19241 -21.55319 -20.22149 -19.70798 -18.02637 -17.78760 -17.57240 -16.20682 -15.82345 -14.83863 -14.66504 -14.42585 -14.36246 -14.30760 -13.88790 -13.64807 -13.56534 -13.05746 -12.96639 -12.63661 -12.58287 -12.49508 -12.36314 -12.26509 -12.00151 -11.85609 -11.71155 -11.48907 -11.34677 -11.12243 -10.89233 -10.83407 -10.80912 -10.47836 -10.30133 -9.57447 -9.36373 -8.87579 -8.83959 -8.32202 -8.12802 -7.31110 -6.44057 -4.04108 1.70496 2.31488 3.11932 3.14133 3.16552 3.52729 3.56782 3.92985 3.94362 4.60342 4.68333 4.79787 4.83511 5.04506 5.06827 5.13348 5.17622 5.39751 5.45844 5.51215 5.53555 5.65834 5.69906 5.73719 5.80044 5.86000 5.92012 5.94545 5.95465 5.98118 6.02556 6.06657 6.11237 6.26023 6.31580 6.41512 6.55728 6.68689 6.90377 7.01533 7.06028 7.23725 7.29111 7.68831 7.92183 8.12083 8.95271 9.10069 9.67522 10.69586 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.004274 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.339229 B = 6549.694750 C = 7855.847649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.138 4.138 3 C -0.113 4.113 4 C 0.112 3.888 5 N -0.713 5.713 6 C 0.557 3.443 7 O -0.498 6.498 8 C -0.227 4.227 9 C -0.039 4.039 10 C -0.230 4.230 11 C -0.050 4.050 12 C -0.237 4.237 13 C 0.189 3.811 14 O -0.123 6.123 15 C -0.405 4.405 16 H 0.093 0.907 17 C 0.045 3.955 18 N -0.832 5.832 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.140 4.140 24 C -0.112 4.112 25 C -0.110 4.110 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.135 0.865 33 H 0.392 0.608 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.272 0.728 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 10.893 -11.308 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.170 4.170 4 C 0.005 3.995 5 N -0.367 5.367 6 C 0.347 3.653 7 O -0.372 6.372 8 C -0.232 4.232 9 C -0.058 4.058 10 C -0.250 4.250 11 C -0.069 4.069 12 C -0.256 4.256 13 C 0.130 3.870 14 O -0.021 6.021 15 C -0.480 4.480 16 H 0.111 0.889 17 C -0.163 4.163 18 N -0.463 5.463 19 Si 0.765 3.235 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.142 4.142 24 C -0.169 4.169 25 C -0.168 4.168 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.229 0.771 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.279 9.856 -10.989 14.816 hybrid contribution 0.797 -0.020 0.514 0.948 sum -0.482 9.835 -10.475 14.377 Atomic orbital electron populations 1.21289 0.91847 1.02182 1.01464 1.22182 0.95075 0.91669 1.05011 1.21253 1.00076 0.94185 1.01482 1.21943 0.88326 0.99549 0.89727 1.45432 1.23054 1.35408 1.32775 1.18238 0.85647 0.82118 0.79260 1.90937 1.55040 1.27723 1.63494 1.18814 0.99128 1.03607 1.01613 1.20729 0.93780 0.94132 0.97112 1.20449 0.99212 1.04129 1.01165 1.20894 0.97629 0.93553 0.94830 1.21157 0.97476 1.02233 1.04778 1.19264 0.89190 0.88300 0.90284 1.84174 1.38799 1.32959 1.46133 1.21453 1.07817 1.05985 1.12768 0.88918 1.25384 0.95734 0.96510 0.98650 1.70124 1.13468 1.23938 1.38800 0.85798 0.78823 0.79031 0.79868 1.19358 1.20147 1.19361 1.22226 0.97929 0.99291 0.94731 1.21235 0.94721 1.01338 0.99606 1.21278 0.98640 0.97012 0.99826 0.92292 0.92323 0.92155 0.92726 0.92263 0.92030 0.84728 0.77071 0.87341 0.87270 0.87159 0.85052 0.91802 0.92143 0.92512 0.92541 0.92195 0.92453 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 8.88 37.16 0.33 -0.82 16 2 C -0.14 -1.63 2.70 -154.47 -0.42 -2.05 16 3 C -0.11 -1.15 8.82 37.16 0.33 -0.82 16 4 C 0.11 1.73 5.67 -67.93 -0.39 1.34 16 5 N -0.71 -12.01 4.56 -54.84 -0.25 -12.26 16 6 C 0.56 12.48 7.76 -12.47 -0.10 12.38 16 7 O -0.50 -13.80 14.73 -16.57 -0.24 -14.04 16 8 C -0.23 -4.98 5.89 -104.81 -0.62 -5.60 16 9 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 10 C -0.23 -3.79 10.02 -39.61 -0.40 -4.19 16 11 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 12 C -0.24 -5.11 9.16 -39.44 -0.36 -5.48 16 13 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 14 O -0.12 -3.64 7.84 -21.06 -0.17 -3.81 16 15 C -0.40 -11.49 9.49 30.90 0.29 -11.20 16 16 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 17 C 0.05 1.26 5.49 -17.52 -0.10 1.17 16 18 N -0.83 -25.18 13.67 55.48 0.76 -24.42 16 19 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.14 -1.72 2.70 -154.47 -0.42 -2.14 16 24 C -0.11 -1.24 8.83 37.16 0.33 -0.91 16 25 C -0.11 -1.23 8.88 37.15 0.33 -0.90 16 26 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 27 H 0.06 0.53 8.02 -51.93 -0.42 0.11 16 28 H 0.06 0.66 7.77 -51.93 -0.40 0.26 16 29 H 0.05 0.56 5.63 -51.93 -0.29 0.27 16 30 H 0.06 0.52 8.03 -51.93 -0.42 0.11 16 31 H 0.06 0.60 7.92 -51.93 -0.41 0.18 16 32 H 0.14 2.44 7.21 -51.93 -0.37 2.07 16 33 H 0.39 5.46 3.45 -40.82 -0.14 5.32 16 34 H 0.11 1.47 6.40 -52.49 -0.34 1.14 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.06 0.67 7.92 -51.93 -0.41 0.26 16 40 H 0.06 0.53 8.03 -51.93 -0.42 0.12 16 41 H 0.06 0.64 5.99 -51.93 -0.31 0.33 16 42 H 0.06 0.70 7.77 -51.93 -0.40 0.30 16 43 H 0.06 0.54 8.02 -51.93 -0.42 0.13 16 44 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16 LS Contribution 355.48 15.07 5.36 5.36 Total: -1.00 -33.86 355.48 -7.90 -41.76 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.12 Total: 8.94 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.21 Total: -17.07 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.51 Total: -36.68 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.41 Total: -17.85 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.86 -7.90 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752395875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.196 kcal (2) G-P(sol) polarization free energy of solvation -33.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds