Wall clock time and date at job start Tue Mar 31 2020 07:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99809 * 2 1 4 4 H 1.48500 * 109.47185 * 275.24944 * 3 2 1 5 5 H 1.48500 * 109.47053 * 35.25220 * 3 2 1 6 6 H 1.48500 * 109.46828 * 155.24976 * 3 2 1 7 7 C 1.39939 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00307 * 342.80180 * 7 2 1 9 9 C 1.41393 * 120.00307 * 162.80449 * 7 2 1 10 10 C 1.40735 * 120.23902 * 329.80347 * 9 7 2 11 11 C 1.37604 * 119.74209 * 180.32057 * 10 9 7 12 12 C 1.38656 * 120.24683 * 359.65710 * 11 10 9 13 13 C 1.38610 * 120.50208 * 0.02562 * 12 11 10 14 14 C 1.37630 * 120.24946 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.12722 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46946 * 265.00054 * 15 14 13 17 17 O 1.21277 * 119.99739 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99665 * 180.02562 * 16 15 14 19 19 C 1.46499 * 119.99881 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47066 * 184.91521 * 19 18 16 21 21 C 1.52999 * 112.85144 * 64.67951 * 20 19 18 22 22 O 1.42901 * 109.47366 * 60.39142 * 21 20 19 23 23 C 1.53781 * 113.61295 * 195.87245 * 20 19 18 24 24 C 1.53957 * 87.01855 * 89.22973 * 23 20 19 25 25 C 1.53782 * 113.61129 * 293.48083 * 20 19 18 26 26 H 0.97001 * 120.00233 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.13125 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.87284 * 179.68257 * 11 10 9 29 29 H 1.08004 * 119.74806 * 180.02562 * 12 11 10 30 30 H 1.08005 * 119.87505 * 180.02562 * 13 12 11 31 31 H 1.09001 * 109.47258 * 145.00246 * 15 14 13 32 32 H 1.08991 * 109.47108 * 25.00293 * 15 14 13 33 33 H 0.96998 * 120.00111 * 359.97438 * 18 16 15 34 34 H 1.09000 * 109.47109 * 64.91175 * 19 18 16 35 35 H 1.09006 * 109.46624 * 304.91271 * 19 18 16 36 36 H 1.08995 * 109.47182 * 180.39763 * 21 20 19 37 37 H 1.09008 * 109.46964 * 300.39459 * 21 20 19 38 38 H 0.96697 * 114.00140 * 180.02562 * 22 21 20 39 39 H 1.08997 * 113.61532 * 203.74140 * 23 20 19 40 40 H 1.08997 * 113.61862 * 334.65651 * 23 20 19 41 41 H 1.09002 * 113.53849 * 270.81362 * 24 23 20 42 42 H 1.08996 * 113.74776 * 139.93858 * 24 23 20 43 43 H 1.08998 * 113.61696 * 25.35539 * 25 20 19 44 44 H 1.09000 * 113.61019 * 156.17049 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3788 2.1105 -1.3942 5 1 1.4995 2.6181 0.8081 6 1 3.5908 1.4107 0.5862 7 6 2.0080 -1.2119 -0.0005 8 1 1.5042 -2.1265 0.2756 9 6 3.3745 -1.2392 -0.3625 10 6 3.8826 -0.3038 -1.2831 11 6 5.2128 -0.3438 -1.6332 12 6 6.0530 -1.2965 -1.0772 13 6 5.5647 -2.2184 -0.1646 14 6 4.2376 -2.1977 0.1994 15 6 3.7096 -3.2018 1.1915 16 6 3.1162 -4.3737 0.4527 17 8 3.1211 -4.3914 -0.7600 18 7 2.5791 -5.4013 1.1396 19 6 2.0027 -6.5408 0.4215 20 6 1.3573 -7.5010 1.4227 21 6 0.1645 -6.8827 2.1547 22 8 -0.8386 -6.5154 1.2056 23 6 1.0678 -8.8947 0.8407 24 6 2.4842 -9.2907 1.2961 25 6 2.3674 -8.1853 2.3588 26 1 -0.4850 0.8400 0.0004 27 1 3.2300 0.4390 -1.7174 28 1 5.6039 0.3697 -2.3434 29 1 7.0958 -1.3203 -1.3574 30 1 6.2283 -2.9558 0.2625 31 1 2.9417 -2.7343 1.8079 32 1 4.5247 -3.5479 1.8269 33 1 2.5748 -5.3869 2.1095 34 1 2.7890 -7.0608 -0.1257 35 1 1.2473 -6.1843 -0.2789 36 1 -0.2472 -7.6083 2.8561 37 1 0.4917 -5.9966 2.6988 38 1 -1.6258 -6.1156 1.6001 39 1 0.2755 -9.4302 1.3637 40 1 0.9394 -8.8979 -0.2417 41 1 3.2522 -9.0969 0.5473 42 1 2.5457 -10.2948 1.7155 43 1 3.2864 -7.6166 2.5003 44 1 1.9312 -8.5252 3.2981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752423877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:36 Heat of formation + Delta-G solvation = -57.044438 kcal Electronic energy + Delta-G solvation = -24945.732876 eV Core-core repulsion = 21441.877143 eV Total energy + Delta-G solvation = -3503.855734 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.20876 -38.82369 -37.41298 -36.16717 -33.78476 -33.51878 -31.79363 -30.26179 -28.99095 -27.28505 -26.02692 -25.49846 -24.55427 -22.31950 -21.34497 -20.42986 -19.41679 -18.49068 -17.34306 -17.28126 -16.49935 -16.02483 -15.71592 -15.25088 -14.90203 -14.76923 -14.42142 -14.20995 -13.73087 -13.63703 -13.10010 -12.89038 -12.71703 -12.59821 -12.45406 -12.07051 -11.96778 -11.81272 -11.58144 -11.33789 -11.02003 -10.74629 -10.72341 -10.63798 -10.41181 -10.39626 -10.19131 -9.92785 -9.64292 -9.49660 -9.10529 -9.06069 -8.55772 -7.52889 -7.43099 -6.86561 -4.40710 2.62937 2.78210 3.17001 3.24686 3.36859 3.43766 3.64562 4.04301 4.10167 4.40330 4.41746 4.59003 4.64315 4.84572 4.99876 5.24458 5.36808 5.44507 5.48759 5.49907 5.56278 5.69967 5.73044 5.85536 5.89597 5.91732 5.98266 6.14411 6.15431 6.22125 6.25398 6.32051 6.35002 6.65171 6.78463 6.90394 7.02110 7.27619 7.49935 7.62706 7.72949 7.81253 7.97414 8.04732 8.21729 8.43745 8.75867 8.89556 8.96146 10.15711 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.004189 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.891705 B = 6682.831412 C = 7873.337953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.084 3.916 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.443 4.443 8 H 0.089 0.911 9 C 0.110 3.890 10 C -0.234 4.234 11 C -0.081 4.081 12 C -0.242 4.242 13 C -0.070 4.070 14 C -0.165 4.165 15 C -0.074 4.074 16 C 0.516 3.484 17 O -0.521 6.521 18 N -0.740 5.740 19 C 0.150 3.850 20 C -0.093 4.093 21 C 0.092 3.908 22 O -0.565 6.565 23 C -0.119 4.119 24 C -0.142 4.142 25 C -0.130 4.130 26 H 0.283 0.717 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.392 0.608 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.379 0.621 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.267 -13.400 8.521 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.167 1.167 7 C -0.472 4.472 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.253 4.253 11 C -0.099 4.099 12 C -0.261 4.261 13 C -0.088 4.088 14 C -0.167 4.167 15 C -0.114 4.114 16 C 0.303 3.697 17 O -0.395 6.395 18 N -0.395 5.395 19 C 0.026 3.974 20 C -0.094 4.094 21 C 0.014 3.986 22 O -0.370 6.370 23 C -0.157 4.157 24 C -0.179 4.179 25 C -0.168 4.168 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.226 0.774 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.226 0.774 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.431 -13.559 7.201 15.419 hybrid contribution -0.312 0.981 0.799 1.303 sum 1.119 -12.578 8.000 14.948 Atomic orbital electron populations 1.69711 1.08038 1.29971 1.35870 1.26149 0.94680 1.01607 0.90946 0.86347 0.81281 0.79921 0.78787 1.19806 1.22083 1.16684 1.19423 0.92720 0.95648 1.39377 0.89274 1.17484 0.92692 0.90120 0.89024 1.20994 0.95436 1.04581 1.04261 1.20591 0.93924 0.97299 0.98097 1.20323 0.98084 1.01752 1.05976 1.20423 0.94562 0.96906 0.96919 1.19080 0.92986 1.01427 1.03167 1.20291 1.00563 0.92740 0.97779 1.21052 0.77347 0.82822 0.88480 1.90689 1.55920 1.78721 1.14170 1.46014 1.62934 1.20830 1.09690 1.20881 0.97135 0.85880 0.93478 1.22115 0.94968 0.95006 0.97300 1.22079 0.88330 0.97734 0.90445 1.86513 1.30603 1.83527 1.36328 1.22854 0.96887 0.94406 1.01559 1.22877 0.97741 0.98491 0.98831 1.22959 0.99016 0.97556 0.97265 0.90677 0.88368 0.89045 0.89050 0.89142 0.88310 0.90478 0.77438 0.92185 0.90475 0.93825 0.93537 0.77425 0.89904 0.90953 0.89914 0.91384 0.90776 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.02 13.93 55.55 0.77 -21.25 16 2 C 0.08 2.25 5.42 -17.34 -0.09 2.16 16 3 Si 0.91 21.24 24.50 -169.99 -4.16 17.08 16 4 H -0.27 -6.27 6.71 56.52 0.38 -5.89 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.24 -5.78 6.82 56.52 0.39 -5.40 16 7 C -0.44 -12.19 8.56 -37.75 -0.32 -12.51 16 8 H 0.09 2.59 7.00 -52.48 -0.37 2.23 16 9 C 0.11 2.88 5.10 -106.83 -0.55 2.34 16 10 C -0.23 -5.97 7.13 -38.87 -0.28 -6.25 16 11 C -0.08 -1.87 10.02 -39.66 -0.40 -2.27 16 12 C -0.24 -5.34 10.05 -39.29 -0.39 -5.74 16 13 C -0.07 -1.54 9.66 -39.67 -0.38 -1.93 16 14 C -0.16 -3.89 4.43 -103.91 -0.46 -4.35 16 15 C -0.07 -1.44 5.19 -29.03 -0.15 -1.59 16 16 C 0.52 10.40 7.42 -10.98 -0.08 10.32 16 17 O -0.52 -13.07 16.03 5.56 0.09 -12.98 16 18 N -0.74 -11.37 5.14 -60.29 -0.31 -11.68 16 19 C 0.15 2.21 4.82 -4.04 -0.02 2.19 16 20 C -0.09 -1.02 0.63 -153.70 -0.10 -1.11 16 21 C 0.09 0.98 6.21 37.16 0.23 1.21 16 22 O -0.56 -7.18 13.16 -35.23 -0.46 -7.64 16 23 C -0.12 -1.17 7.22 -25.83 -0.19 -1.35 16 24 C -0.14 -1.22 7.74 -25.83 -0.20 -1.42 16 25 C -0.13 -1.12 7.02 -25.92 -0.18 -1.30 16 26 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 27 H 0.10 2.50 4.71 -52.49 -0.25 2.26 16 28 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 29 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 30 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 31 H 0.10 1.92 7.15 -51.93 -0.37 1.55 16 32 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 33 H 0.39 4.79 7.73 -40.82 -0.32 4.47 16 34 H 0.06 0.89 7.31 -51.93 -0.38 0.51 16 35 H 0.08 1.40 7.80 -51.93 -0.40 1.00 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.49 7.55 -51.92 -0.39 0.10 16 38 H 0.38 3.33 9.12 45.56 0.42 3.74 16 39 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.07 0.78 8.10 -51.93 -0.42 0.35 16 41 H 0.08 0.76 7.61 -51.93 -0.40 0.37 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 44 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -33.23 354.98 -8.12 -41.35 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.83 Total: 11.38 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.56 Total: -21.61 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.46 Total: -32.93 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.37 Total: -20.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.16 Total: 17.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.23 -8.12 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752423877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.695 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds