Wall clock time and date at job start Tue Mar 31 2020 07:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99809 * 2 1 4 4 H 1.48500 * 109.47185 * 275.24944 * 3 2 1 5 5 H 1.48500 * 109.47053 * 35.25220 * 3 2 1 6 6 H 1.48500 * 109.46828 * 155.24976 * 3 2 1 7 7 C 1.39939 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00307 * 342.80180 * 7 2 1 9 9 C 1.41393 * 120.00307 * 162.80449 * 7 2 1 10 10 C 1.40735 * 120.23902 * 329.80347 * 9 7 2 11 11 C 1.37604 * 119.74209 * 180.32057 * 10 9 7 12 12 C 1.38656 * 120.24683 * 359.65710 * 11 10 9 13 13 C 1.38610 * 120.50208 * 0.02562 * 12 11 10 14 14 C 1.37630 * 120.24946 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.12722 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46946 * 265.00054 * 15 14 13 17 17 O 1.21277 * 119.99739 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99665 * 180.02562 * 16 15 14 19 19 C 1.46499 * 119.99881 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47066 * 184.91521 * 19 18 16 21 21 C 1.52999 * 112.85144 * 64.67951 * 20 19 18 22 22 O 1.42901 * 109.47366 * 60.39142 * 21 20 19 23 23 C 1.53781 * 113.61295 * 195.87245 * 20 19 18 24 24 C 1.53957 * 87.01855 * 89.22973 * 23 20 19 25 25 C 1.53782 * 113.61129 * 293.48083 * 20 19 18 26 26 H 0.97001 * 120.00233 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.13125 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.87284 * 179.68257 * 11 10 9 29 29 H 1.08004 * 119.74806 * 180.02562 * 12 11 10 30 30 H 1.08005 * 119.87505 * 180.02562 * 13 12 11 31 31 H 1.09001 * 109.47258 * 145.00246 * 15 14 13 32 32 H 1.08991 * 109.47108 * 25.00293 * 15 14 13 33 33 H 0.96998 * 120.00111 * 359.97438 * 18 16 15 34 34 H 1.09000 * 109.47109 * 64.91175 * 19 18 16 35 35 H 1.09006 * 109.46624 * 304.91271 * 19 18 16 36 36 H 1.08995 * 109.47182 * 180.39763 * 21 20 19 37 37 H 1.09008 * 109.46964 * 300.39459 * 21 20 19 38 38 H 0.96697 * 114.00140 * 180.02562 * 22 21 20 39 39 H 1.08997 * 113.61532 * 203.74140 * 23 20 19 40 40 H 1.08997 * 113.61862 * 334.65651 * 23 20 19 41 41 H 1.09002 * 113.53849 * 270.81362 * 24 23 20 42 42 H 1.08996 * 113.74776 * 139.93858 * 24 23 20 43 43 H 1.08998 * 113.61696 * 25.35539 * 25 20 19 44 44 H 1.09000 * 113.61019 * 156.17049 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3788 2.1105 -1.3942 5 1 1.4995 2.6181 0.8081 6 1 3.5908 1.4107 0.5862 7 6 2.0080 -1.2119 -0.0005 8 1 1.5042 -2.1265 0.2756 9 6 3.3745 -1.2392 -0.3625 10 6 3.8826 -0.3038 -1.2831 11 6 5.2128 -0.3438 -1.6332 12 6 6.0530 -1.2965 -1.0772 13 6 5.5647 -2.2184 -0.1646 14 6 4.2376 -2.1977 0.1994 15 6 3.7096 -3.2018 1.1915 16 6 3.1162 -4.3737 0.4527 17 8 3.1211 -4.3914 -0.7600 18 7 2.5791 -5.4013 1.1396 19 6 2.0027 -6.5408 0.4215 20 6 1.3573 -7.5010 1.4227 21 6 0.1645 -6.8827 2.1547 22 8 -0.8386 -6.5154 1.2056 23 6 1.0678 -8.8947 0.8407 24 6 2.4842 -9.2907 1.2961 25 6 2.3674 -8.1853 2.3588 26 1 -0.4850 0.8400 0.0004 27 1 3.2300 0.4390 -1.7174 28 1 5.6039 0.3697 -2.3434 29 1 7.0958 -1.3203 -1.3574 30 1 6.2283 -2.9558 0.2625 31 1 2.9417 -2.7343 1.8079 32 1 4.5247 -3.5479 1.8269 33 1 2.5748 -5.3869 2.1095 34 1 2.7890 -7.0608 -0.1257 35 1 1.2473 -6.1843 -0.2789 36 1 -0.2472 -7.6083 2.8561 37 1 0.4917 -5.9966 2.6988 38 1 -1.6258 -6.1156 1.6001 39 1 0.2755 -9.4302 1.3637 40 1 0.9394 -8.8979 -0.2417 41 1 3.2522 -9.0969 0.5473 42 1 2.5457 -10.2948 1.7155 43 1 3.2864 -7.6166 2.5003 44 1 1.9312 -8.5252 3.2981 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752423877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:36 Heat of formation + Delta-G solvation = -81.289580 kcal Electronic energy + Delta-G solvation = -24946.784224 eV Core-core repulsion = 21441.877143 eV Total energy + Delta-G solvation = -3504.907082 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29912 -40.30229 -39.14448 -37.08112 -35.47576 -35.23004 -33.51377 -32.15978 -30.11491 -28.70119 -27.19523 -26.67649 -26.15046 -23.25950 -23.08361 -22.09121 -21.04008 -19.49448 -19.22609 -18.27687 -17.84663 -17.57069 -17.12602 -16.61773 -16.35782 -15.97552 -15.91877 -15.45632 -15.35666 -15.16820 -14.59138 -14.49493 -14.04013 -13.91594 -13.76169 -13.64740 -13.22004 -13.14097 -12.89462 -12.68228 -12.66111 -12.49228 -12.41148 -11.97947 -11.52679 -11.49071 -11.36521 -11.23789 -11.22009 -10.96739 -10.85331 -10.72128 -9.99539 -9.38975 -9.27948 -8.85009 -6.44205 0.80508 0.91254 1.27313 1.39951 1.49595 1.82933 2.14596 2.32691 2.66363 3.25126 3.53551 3.56092 3.60835 3.88904 3.98508 4.07873 4.17260 4.29299 4.36405 4.45436 4.49414 4.57225 4.59522 4.61540 4.73211 4.76923 4.83332 4.87952 4.92289 4.94344 4.99590 5.10512 5.16001 5.17533 5.33745 5.38599 5.50751 5.54627 5.68765 5.87534 5.96452 6.06276 6.30469 6.46710 6.66252 6.82048 6.88485 6.91961 7.43909 8.23113 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.004189 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.891705 B = 6682.831412 C = 7873.337953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.047 3.953 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.249 1.249 7 C -0.470 4.470 8 H 0.054 0.946 9 C 0.083 3.917 10 C -0.258 4.258 11 C -0.092 4.092 12 C -0.229 4.229 13 C -0.079 4.079 14 C -0.172 4.172 15 C -0.073 4.073 16 C 0.514 3.486 17 O -0.580 6.580 18 N -0.718 5.718 19 C 0.154 3.846 20 C -0.099 4.099 21 C 0.087 3.913 22 O -0.595 6.595 23 C -0.120 4.120 24 C -0.137 4.137 25 C -0.117 4.117 26 H 0.291 0.709 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.411 0.589 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -14.413 10.346 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.166 4.166 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.173 1.173 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.080 3.920 10 C -0.277 4.277 11 C -0.110 4.110 12 C -0.248 4.248 13 C -0.097 4.097 14 C -0.174 4.174 15 C -0.112 4.112 16 C 0.302 3.698 17 O -0.459 6.459 18 N -0.371 5.371 19 C 0.030 3.970 20 C -0.100 4.100 21 C 0.010 3.990 22 O -0.403 6.403 23 C -0.158 4.158 24 C -0.175 4.175 25 C -0.154 4.154 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.248 0.752 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.241 0.759 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.912 -14.593 9.087 17.630 hybrid contribution -0.949 1.159 0.186 1.509 sum 2.963 -13.434 9.273 16.590 Atomic orbital electron populations 1.69746 1.09093 1.31072 1.38182 1.26787 0.95266 1.04053 0.90521 0.85498 0.79842 0.76841 0.78900 1.19550 1.20375 1.17274 1.19322 0.93827 0.94901 1.41908 0.92759 1.17735 0.92612 0.91719 0.89888 1.21146 0.96824 1.04893 1.04825 1.20981 0.93079 0.98359 0.98606 1.20881 0.99730 1.00067 1.04141 1.20905 0.94394 0.97599 0.96785 1.19574 0.93666 1.01016 1.03138 1.20340 1.01905 0.91713 0.97240 1.21201 0.77121 0.83661 0.87802 1.90660 1.58585 1.80054 1.16587 1.45781 1.60943 1.19808 1.10579 1.20816 0.95968 0.86061 0.94140 1.22128 0.95839 0.94597 0.97435 1.22260 0.87908 0.98454 0.90396 1.86483 1.31786 1.83905 1.38085 1.22909 0.98465 0.93762 1.00643 1.22853 0.96315 0.99745 0.98564 1.22968 0.98103 0.96654 0.97700 0.89918 0.89217 0.86060 0.85312 0.85432 0.88768 0.85856 0.75228 0.92515 0.94853 0.90718 0.93774 0.75868 0.88204 0.92818 0.91007 0.89284 0.90710 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.51 13.93 21.82 0.30 -48.21 16 2 C 0.05 2.63 5.42 85.25 0.46 3.09 16 3 Si 0.96 44.68 24.50 68.60 1.68 46.36 16 4 H -0.27 -12.20 6.71 99.48 0.67 -11.54 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.25 -11.60 6.82 99.48 0.68 -10.92 16 7 C -0.47 -27.15 8.56 23.46 0.20 -26.95 16 8 H 0.05 3.40 7.00 -2.91 -0.02 3.38 16 9 C 0.08 4.44 5.10 -21.29 -0.11 4.33 16 10 C -0.26 -13.17 7.13 22.73 0.16 -13.01 16 11 C -0.09 -4.06 10.02 22.22 0.22 -3.84 16 12 C -0.23 -9.29 10.05 22.46 0.23 -9.06 16 13 C -0.08 -3.25 9.66 22.21 0.21 -3.03 16 14 C -0.17 -8.00 4.43 -19.41 -0.09 -8.09 16 15 C -0.07 -2.77 5.19 29.11 0.15 -2.62 16 16 C 0.51 21.03 7.42 87.66 0.65 21.69 16 17 O -0.58 -30.25 16.03 -3.02 -0.05 -30.30 16 18 N -0.72 -22.05 5.14 -463.05 -2.38 -24.43 16 19 C 0.15 4.68 4.82 86.38 0.42 5.10 16 20 C -0.10 -2.06 0.63 -51.66 -0.03 -2.10 16 21 C 0.09 1.75 6.21 71.98 0.45 2.20 16 22 O -0.59 -15.44 13.16 -148.98 -1.96 -17.40 16 23 C -0.12 -2.20 7.22 31.18 0.23 -1.98 16 24 C -0.14 -2.05 7.74 31.18 0.24 -1.81 16 25 C -0.12 -1.66 7.02 31.12 0.22 -1.44 16 26 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 27 H 0.09 4.63 4.71 -2.91 -0.01 4.62 16 28 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.09 3.70 7.15 -2.39 -0.02 3.68 16 32 H 0.12 3.48 8.05 -2.39 -0.02 3.46 16 33 H 0.41 9.50 7.73 -92.71 -0.72 8.78 16 34 H 0.06 1.75 7.31 -2.39 -0.02 1.73 16 35 H 0.03 1.31 7.80 -2.38 -0.02 1.29 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.04 0.88 7.55 -2.38 -0.02 0.87 16 38 H 0.39 7.10 9.12 -74.06 -0.68 6.42 16 39 H 0.10 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 41 H 0.07 1.24 7.61 -2.39 -0.02 1.22 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 44 H 0.11 1.05 8.10 -2.39 -0.02 1.04 16 Total: -1.00 -76.63 354.98 0.77 -75.86 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.44 Total: 35.64 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 3.61 Total: -37.53 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -2.07 Total: -72.64 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -2.01 Total: -47.69 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.68 Total: 46.36 kcal Total: -76.63 0.77 -75.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752423877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.427 kcal (2) G-P(sol) polarization free energy of solvation -76.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds