Wall clock time and date at job start Tue Mar 31 2020 08:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86807 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47139 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46768 * 119.99659 * 3 2 1 6 6 H 1.48493 * 109.47304 * 239.99624 * 3 2 1 7 7 C 1.40292 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00291 * 161.06921 * 7 2 1 9 9 C 1.40867 * 120.00071 * 341.07530 * 7 2 1 10 10 C 1.40705 * 120.32673 * 328.21170 * 9 7 2 11 11 C 1.37594 * 119.88390 * 179.97438 * 10 9 7 12 12 C 1.38841 * 120.58702 * 0.02562 * 11 10 9 13 13 C 1.38200 * 120.67826 * 0.02562 * 12 11 10 14 14 C 1.39298 * 120.08643 * 359.73723 * 13 12 11 15 15 C 1.47283 * 120.28484 * 180.27705 * 14 13 12 16 16 O 1.21539 * 119.99480 * 173.53778 * 15 14 13 17 17 O 1.34799 * 120.00767 * 353.54144 * 15 14 13 18 18 C 1.45195 * 117.00778 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47649 * 179.97438 * 18 17 15 20 20 N 1.46899 * 109.46644 * 64.73783 * 19 18 17 21 21 C 1.46848 * 110.99666 * 200.08584 * 20 19 18 22 22 C 1.53034 * 109.52204 * 174.16020 * 21 20 19 23 23 C 1.53126 * 109.27797 * 59.17980 * 22 21 20 24 24 C 1.53120 * 109.15861 * 302.34271 * 23 22 21 25 25 C 1.46842 * 111.00135 * 75.87329 * 20 19 18 26 26 H 0.96998 * 119.99799 * 173.37667 * 1 2 3 27 27 H 1.08007 * 120.06101 * 359.95872 * 10 9 7 28 28 H 1.08006 * 119.71229 * 179.97438 * 11 10 9 29 29 H 1.07998 * 119.66124 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.95664 * 180.02562 * 13 12 11 31 31 H 1.09004 * 109.47234 * 300.00009 * 18 17 15 32 32 H 1.09008 * 109.46900 * 59.99607 * 18 17 15 33 33 H 1.09000 * 109.47018 * 184.73730 * 19 18 17 34 34 H 1.09002 * 109.46943 * 304.73888 * 19 18 17 35 35 H 1.09004 * 109.46145 * 294.17511 * 21 20 19 36 36 H 1.09000 * 109.46410 * 54.14396 * 21 20 19 37 37 H 1.08992 * 109.50711 * 299.23632 * 22 21 20 38 38 H 1.09008 * 109.50551 * 179.11613 * 22 21 20 39 39 H 1.09006 * 109.51906 * 182.43980 * 23 22 21 40 40 H 1.08999 * 109.52522 * 62.24872 * 23 22 21 41 41 H 1.09001 * 109.50318 * 297.71766 * 24 23 22 42 42 H 1.09004 * 109.49826 * 177.59968 * 24 23 22 43 43 H 1.08999 * 109.46645 * 305.85731 * 25 20 19 44 44 H 1.09005 * 109.46500 * 65.82355 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 1.2751 2.7465 -0.0006 5 1 3.0938 1.6965 1.2126 6 1 3.0939 1.6965 -1.2124 7 6 2.0077 -1.2149 0.0005 8 1 3.0439 -1.2403 -0.3029 9 6 1.3605 -2.4018 0.3967 10 6 0.3439 -2.3662 1.3689 11 6 -0.2825 -3.5309 1.7487 12 6 0.0796 -4.7453 1.1813 13 6 1.0755 -4.8078 0.2252 14 6 1.7249 -3.6453 -0.1837 15 6 2.7828 -3.7061 -1.2067 16 8 3.2639 -2.6796 -1.6450 17 8 3.2173 -4.9000 -1.6570 18 6 4.2615 -4.8840 -2.6657 19 6 4.6220 -6.3205 -3.0497 20 7 3.4654 -6.9609 -3.6901 21 6 3.5815 -8.4241 -3.6434 22 6 2.2979 -9.0564 -4.1859 23 6 2.0740 -8.5892 -5.6269 24 6 2.0051 -7.0598 -5.6543 25 6 3.2972 -6.4853 -5.0691 26 1 -0.4850 -0.8344 -0.0969 27 1 0.0559 -1.4263 1.8164 28 1 -1.0622 -3.5005 2.4955 29 1 -0.4217 -5.6504 1.4908 30 1 1.3475 -5.7586 -0.2088 31 1 3.9070 -4.3499 -3.5473 32 1 5.1437 -4.3824 -2.2675 33 1 5.4625 -6.3110 -3.7437 34 1 4.8964 -6.8780 -2.1542 35 1 4.4280 -8.7409 -4.2526 36 1 3.7362 -8.7434 -2.6128 37 1 1.4528 -8.7512 -3.5690 38 1 2.3904 -10.1424 -4.1658 39 1 1.1380 -9.0028 -6.0026 40 1 2.9000 -8.9279 -6.2522 41 1 1.1554 -6.7231 -5.0603 42 1 1.8884 -6.7192 -6.6832 43 1 3.2455 -5.3965 -5.0741 44 1 4.1451 -6.8112 -5.6718 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770332921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:36 Heat of formation + Delta-G solvation = -80.640254 kcal Electronic energy + Delta-G solvation = -24832.515916 eV Core-core repulsion = 21327.636991 eV Total energy + Delta-G solvation = -3504.878925 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.50476 -38.86370 -37.40116 -35.39581 -34.03151 -33.67014 -30.95677 -30.26000 -29.43839 -28.89805 -25.43577 -24.38343 -23.16530 -22.81328 -21.32726 -20.89330 -19.88909 -19.63147 -18.00799 -16.66465 -16.45927 -15.75537 -15.17914 -14.90791 -14.72746 -14.50830 -14.37976 -14.11413 -13.92982 -13.58497 -13.36871 -13.10276 -12.70715 -12.53420 -12.22052 -12.11825 -12.09026 -11.60850 -11.30708 -11.24645 -11.09397 -10.93426 -10.82677 -10.69263 -10.49291 -10.40258 -10.33793 -10.18129 -9.80355 -9.67051 -9.14675 -8.80278 -8.29865 -7.81048 -7.64841 -7.21490 -4.54041 2.16431 2.76108 3.17224 3.29415 3.37807 3.62498 3.80295 3.88321 4.00032 4.58248 4.68872 4.72551 4.80511 5.03704 5.17992 5.20919 5.33742 5.37730 5.42139 5.45111 5.48701 5.60591 5.66482 5.72682 5.82726 5.86209 5.95101 6.04846 6.05647 6.08661 6.13859 6.26969 6.29537 6.53967 6.79007 6.97709 7.04448 7.08669 7.25713 7.41056 7.53281 7.60909 7.77377 7.85583 8.09852 8.18141 8.66103 8.77526 9.12976 9.97051 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.003786 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.743161 B = 7393.539452 C = 8184.920630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.032 3.968 3 Si 1.070 2.930 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.122 3.878 10 C -0.206 4.206 11 C -0.070 4.070 12 C -0.264 4.264 13 C -0.019 4.019 14 C -0.254 4.254 15 C 0.503 3.497 16 O -0.521 6.521 17 O -0.352 6.352 18 C 0.076 3.924 19 C 0.058 3.942 20 N -0.529 5.529 21 C 0.058 3.942 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.118 4.118 25 C 0.053 3.947 26 H 0.301 0.699 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 -12.524 -7.642 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.190 4.190 3 Si 0.893 3.107 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.491 4.491 8 H 0.122 0.878 9 C 0.117 3.883 10 C -0.225 4.225 11 C -0.088 4.088 12 C -0.283 4.283 13 C -0.038 4.038 14 C -0.257 4.257 15 C 0.354 3.646 16 O -0.413 6.413 17 O -0.271 6.271 18 C 0.001 3.999 19 C -0.070 4.070 20 N -0.254 5.254 21 C -0.070 4.070 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.074 4.074 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 4.979 -10.455 -7.467 13.779 hybrid contribution 0.909 -1.943 -0.622 2.234 sum 5.888 -12.398 -8.089 15.932 Atomic orbital electron populations 1.70367 1.08252 1.34662 1.27799 1.27313 0.95685 1.04727 0.91317 0.83563 0.75578 0.73238 0.78310 1.19791 1.19857 1.19743 1.21249 1.01464 0.92119 1.34309 0.87760 1.17467 0.90026 0.91639 0.89135 1.21208 1.02534 0.97284 1.01475 1.20794 0.97346 0.93151 0.97543 1.20317 1.05175 0.96598 1.06240 1.20921 0.93034 0.96238 0.93581 1.18671 1.05903 0.95406 1.05692 1.21335 0.81848 0.80393 0.81037 1.90723 1.57522 1.34709 1.58313 1.86641 1.52252 1.34571 1.53610 1.22740 0.90194 0.95886 0.91103 1.22157 0.91047 0.94747 0.99004 1.61805 1.40800 1.05608 1.17216 1.22080 0.96684 0.87364 1.00827 1.21590 0.98451 0.99107 0.96403 1.21571 1.01337 0.96050 0.96790 1.21582 0.98347 0.95254 1.00387 1.22148 0.96918 1.00378 0.87991 0.88520 0.87210 0.88748 0.88694 0.87631 0.92071 0.91760 0.93028 0.89834 0.95425 0.90648 0.90742 0.91795 0.91931 0.92613 0.90724 0.91736 0.90621 0.95268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.91 12.44 55.57 0.69 -20.22 16 2 C 0.03 0.82 5.06 -17.30 -0.09 0.74 16 3 Si 1.07 22.21 29.98 -169.99 -5.10 17.11 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.47 -12.78 7.71 -37.82 -0.29 -13.07 16 8 H 0.10 2.97 5.87 -52.49 -0.31 2.66 16 9 C 0.12 3.27 5.24 -106.53 -0.56 2.71 16 10 C -0.21 -5.17 7.84 -38.89 -0.30 -5.47 16 11 C -0.07 -1.56 10.01 -39.59 -0.40 -1.95 16 12 C -0.26 -5.74 10.03 -39.37 -0.39 -6.14 16 13 C -0.02 -0.44 9.60 -39.20 -0.38 -0.82 16 14 C -0.25 -6.48 5.92 -104.39 -0.62 -7.10 16 15 C 0.50 12.36 7.84 34.41 0.27 12.63 16 16 O -0.52 -13.86 13.36 -19.30 -0.26 -14.12 16 17 O -0.35 -7.30 9.44 -40.76 -0.38 -7.68 16 18 C 0.08 1.25 5.66 37.16 0.21 1.46 16 19 C 0.06 0.74 5.40 -3.82 -0.02 0.72 16 20 N -0.53 -6.90 4.53 -234.67 -1.06 -7.96 16 21 C 0.06 0.63 5.43 -3.83 -0.02 0.61 16 22 C -0.12 -1.16 6.09 -26.65 -0.16 -1.33 16 23 C -0.12 -1.12 6.00 -26.60 -0.16 -1.28 16 24 C -0.12 -1.28 6.09 -26.65 -0.16 -1.44 16 25 C 0.05 0.63 5.29 -3.84 -0.02 0.61 16 26 H 0.30 8.18 6.48 -40.82 -0.26 7.91 16 27 H 0.11 2.78 6.73 -52.48 -0.35 2.43 16 28 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 30 H 0.11 2.20 7.62 -52.49 -0.40 1.80 16 31 H 0.06 1.04 6.71 -51.93 -0.35 0.69 16 32 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 33 H 0.05 0.55 8.00 -51.93 -0.42 0.13 16 34 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.98 6.66 -51.93 -0.35 0.63 16 44 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -29.56 353.46 -10.58 -40.13 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.70 Total: 6.53 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -3.09 Total: -19.11 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: -0.37 Total: -28.18 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.64 Total: -21.81 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.10 Total: 17.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.56 -10.58 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770332921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.507 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds