Wall clock time and date at job start Tue Mar 31 2020 08:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86807 * 119.99796 * 2 1 4 4 H 1.48499 * 109.47139 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46768 * 119.99659 * 3 2 1 6 6 H 1.48493 * 109.47304 * 239.99624 * 3 2 1 7 7 C 1.40292 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00291 * 161.06921 * 7 2 1 9 9 C 1.40867 * 120.00071 * 341.07530 * 7 2 1 10 10 C 1.40705 * 120.32673 * 328.21170 * 9 7 2 11 11 C 1.37594 * 119.88390 * 179.97438 * 10 9 7 12 12 C 1.38841 * 120.58702 * 0.02562 * 11 10 9 13 13 C 1.38200 * 120.67826 * 0.02562 * 12 11 10 14 14 C 1.39298 * 120.08643 * 359.73723 * 13 12 11 15 15 C 1.47283 * 120.28484 * 180.27705 * 14 13 12 16 16 O 1.21539 * 119.99480 * 173.53778 * 15 14 13 17 17 O 1.34799 * 120.00767 * 353.54144 * 15 14 13 18 18 C 1.45195 * 117.00778 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47649 * 179.97438 * 18 17 15 20 20 N 1.46899 * 109.46644 * 64.73783 * 19 18 17 21 21 C 1.46848 * 110.99666 * 200.08584 * 20 19 18 22 22 C 1.53034 * 109.52204 * 174.16020 * 21 20 19 23 23 C 1.53126 * 109.27797 * 59.17980 * 22 21 20 24 24 C 1.53120 * 109.15861 * 302.34271 * 23 22 21 25 25 C 1.46842 * 111.00135 * 75.87329 * 20 19 18 26 26 H 0.96998 * 119.99799 * 173.37667 * 1 2 3 27 27 H 1.08007 * 120.06101 * 359.95872 * 10 9 7 28 28 H 1.08006 * 119.71229 * 179.97438 * 11 10 9 29 29 H 1.07998 * 119.66124 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.95664 * 180.02562 * 13 12 11 31 31 H 1.09004 * 109.47234 * 300.00009 * 18 17 15 32 32 H 1.09008 * 109.46900 * 59.99607 * 18 17 15 33 33 H 1.09000 * 109.47018 * 184.73730 * 19 18 17 34 34 H 1.09002 * 109.46943 * 304.73888 * 19 18 17 35 35 H 1.09004 * 109.46145 * 294.17511 * 21 20 19 36 36 H 1.09000 * 109.46410 * 54.14396 * 21 20 19 37 37 H 1.08992 * 109.50711 * 299.23632 * 22 21 20 38 38 H 1.09008 * 109.50551 * 179.11613 * 22 21 20 39 39 H 1.09006 * 109.51906 * 182.43980 * 23 22 21 40 40 H 1.08999 * 109.52522 * 62.24872 * 23 22 21 41 41 H 1.09001 * 109.50318 * 297.71766 * 24 23 22 42 42 H 1.09004 * 109.49826 * 177.59968 * 24 23 22 43 43 H 1.08999 * 109.46645 * 305.85731 * 25 20 19 44 44 H 1.09005 * 109.46500 * 65.82355 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 1.2751 2.7465 -0.0006 5 1 3.0938 1.6965 1.2126 6 1 3.0939 1.6965 -1.2124 7 6 2.0077 -1.2149 0.0005 8 1 3.0439 -1.2403 -0.3029 9 6 1.3605 -2.4018 0.3967 10 6 0.3439 -2.3662 1.3689 11 6 -0.2825 -3.5309 1.7487 12 6 0.0796 -4.7453 1.1813 13 6 1.0755 -4.8078 0.2252 14 6 1.7249 -3.6453 -0.1837 15 6 2.7828 -3.7061 -1.2067 16 8 3.2639 -2.6796 -1.6450 17 8 3.2173 -4.9000 -1.6570 18 6 4.2615 -4.8840 -2.6657 19 6 4.6220 -6.3205 -3.0497 20 7 3.4654 -6.9609 -3.6901 21 6 3.5815 -8.4241 -3.6434 22 6 2.2979 -9.0564 -4.1859 23 6 2.0740 -8.5892 -5.6269 24 6 2.0051 -7.0598 -5.6543 25 6 3.2972 -6.4853 -5.0691 26 1 -0.4850 -0.8344 -0.0969 27 1 0.0559 -1.4263 1.8164 28 1 -1.0622 -3.5005 2.4955 29 1 -0.4217 -5.6504 1.4908 30 1 1.3475 -5.7586 -0.2088 31 1 3.9070 -4.3499 -3.5473 32 1 5.1437 -4.3824 -2.2675 33 1 5.4625 -6.3110 -3.7437 34 1 4.8964 -6.8780 -2.1542 35 1 4.4280 -8.7409 -4.2526 36 1 3.7362 -8.7434 -2.6128 37 1 1.4528 -8.7512 -3.5690 38 1 2.3904 -10.1424 -4.1658 39 1 1.1380 -9.0028 -6.0026 40 1 2.9000 -8.9279 -6.2522 41 1 1.1554 -6.7231 -5.0603 42 1 1.8884 -6.7192 -6.6832 43 1 3.2455 -5.3965 -5.0741 44 1 4.1451 -6.8112 -5.6718 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770332921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:35 Heat of formation + Delta-G solvation = -95.995064 kcal Electronic energy + Delta-G solvation = -24833.181750 eV Core-core repulsion = 21327.636991 eV Total energy + Delta-G solvation = -3505.544759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20613 -39.96232 -39.19724 -37.13958 -35.87444 -34.77786 -32.10599 -31.78504 -31.29750 -30.16648 -27.33492 -25.53937 -24.50088 -23.98672 -22.94388 -22.37322 -21.54223 -20.60932 -19.93535 -18.43490 -17.66027 -17.41471 -16.61759 -16.54991 -16.13258 -15.87244 -15.62967 -15.41177 -15.28359 -14.89831 -14.60654 -14.50580 -14.20569 -13.93164 -13.90130 -13.50755 -13.18131 -13.08791 -12.96508 -12.72298 -12.51896 -12.30247 -12.14147 -12.07968 -11.96289 -11.63744 -11.56926 -11.47673 -11.23808 -11.22072 -11.03118 -10.72621 -9.72539 -9.57220 -9.23786 -9.19638 -6.56532 0.25123 0.88673 1.46591 1.61944 1.77146 1.96727 2.01444 2.28196 2.66503 2.86255 3.48594 3.79086 3.86158 3.94057 4.07204 4.11863 4.20064 4.30390 4.31546 4.36129 4.40173 4.45071 4.53791 4.61192 4.65521 4.72541 4.81449 4.86127 4.90667 4.91709 5.03577 5.07073 5.07864 5.21844 5.29740 5.36695 5.47405 5.53715 5.63328 5.70197 5.81874 5.93523 6.11343 6.15375 6.19363 6.27543 6.69930 6.78351 7.24707 7.95656 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.003786 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.743161 B = 7393.539452 C = 8184.920630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.000 4.000 3 Si 1.116 2.884 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.270 1.270 7 C -0.506 4.506 8 H 0.084 0.916 9 C 0.099 3.901 10 C -0.227 4.227 11 C -0.062 4.062 12 C -0.249 4.249 13 C -0.022 4.022 14 C -0.279 4.279 15 C 0.502 3.498 16 O -0.551 6.551 17 O -0.348 6.348 18 C 0.069 3.931 19 C 0.068 3.932 20 N -0.555 5.555 21 C 0.058 3.942 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.118 4.118 25 C 0.053 3.947 26 H 0.286 0.714 27 H 0.099 0.901 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.737 -14.871 -7.769 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.217 4.217 3 Si 0.933 3.067 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.195 1.195 7 C -0.532 4.532 8 H 0.102 0.898 9 C 0.095 3.905 10 C -0.246 4.246 11 C -0.080 4.080 12 C -0.268 4.268 13 C -0.040 4.040 14 C -0.282 4.282 15 C 0.354 3.646 16 O -0.445 6.445 17 O -0.266 6.266 18 C -0.005 4.005 19 C -0.060 4.060 20 N -0.280 5.280 21 C -0.069 4.069 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.075 4.075 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.154 0.846 30 H 0.145 0.855 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.222 -12.854 -7.591 15.814 hybrid contribution 0.816 -1.477 -0.607 1.793 sum 6.037 -14.331 -8.197 17.579 Atomic orbital electron populations 1.70475 1.08618 1.33550 1.30247 1.28577 0.95805 1.07388 0.89884 0.83023 0.74853 0.69872 0.78957 1.18591 1.18168 1.19498 1.21242 1.00997 0.93679 1.37325 0.89842 1.17841 0.90775 0.92244 0.89595 1.21211 1.03325 0.98127 1.01931 1.21216 0.97095 0.92321 0.97396 1.20823 1.03760 0.97827 1.04340 1.21192 0.92941 0.96120 0.93783 1.19057 1.06765 0.96112 1.06236 1.21358 0.81565 0.80958 0.80763 1.90698 1.58520 1.35998 1.59269 1.86604 1.53228 1.32336 1.54392 1.23128 0.88867 0.98987 0.89541 1.22107 0.91821 0.92008 1.00047 1.61758 1.41193 1.07198 1.17899 1.22134 0.97662 0.85773 1.01330 1.21598 0.97281 1.00326 0.96263 1.21554 1.02402 0.94574 0.96767 1.21584 0.96839 0.96656 1.00526 1.22143 0.98078 0.99254 0.87990 0.90122 0.88334 0.85130 0.84582 0.85543 0.93075 0.91531 0.90154 0.88992 0.93805 0.90590 0.92737 0.89685 0.91054 0.91195 0.93237 0.90486 0.92660 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.28 12.44 21.88 0.27 -44.01 16 2 C 0.00 0.01 5.06 85.37 0.43 0.44 16 3 Si 1.12 45.92 29.98 68.60 2.06 47.98 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.51 -29.15 7.71 23.41 0.18 -28.97 16 8 H 0.08 5.05 5.87 -2.91 -0.02 5.03 16 9 C 0.10 5.52 5.24 -21.10 -0.11 5.41 16 10 C -0.23 -11.53 7.84 22.72 0.18 -11.35 16 11 C -0.06 -2.65 10.01 22.26 0.22 -2.42 16 12 C -0.25 -10.05 10.03 22.41 0.22 -9.83 16 13 C -0.02 -0.98 9.60 22.52 0.22 -0.76 16 14 C -0.28 -14.48 5.92 -19.71 -0.12 -14.60 16 15 C 0.50 25.42 7.84 70.20 0.55 25.97 16 16 O -0.55 -30.71 13.36 19.71 0.26 -30.45 16 17 O -0.35 -14.52 9.44 -57.10 -0.54 -15.06 16 18 C 0.07 2.29 5.66 71.98 0.41 2.70 16 19 C 0.07 1.61 5.40 86.30 0.47 2.08 16 20 N -0.55 -13.63 4.53 -896.37 -4.06 -17.69 16 21 C 0.06 1.11 5.43 86.32 0.47 1.57 16 22 C -0.12 -2.05 6.09 30.65 0.19 -1.86 16 23 C -0.12 -1.89 6.00 30.68 0.18 -1.71 16 24 C -0.12 -2.44 6.09 30.65 0.19 -2.25 16 25 C 0.05 1.20 5.29 86.33 0.46 1.66 16 26 H 0.29 16.25 6.48 -92.71 -0.60 15.65 16 27 H 0.10 5.15 6.73 -2.91 -0.02 5.13 16 28 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 30 H 0.13 5.01 7.62 -2.91 -0.02 4.98 16 31 H 0.05 1.79 6.71 -2.38 -0.02 1.77 16 32 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.08 1.48 8.00 -2.39 -0.02 1.47 16 34 H 0.09 2.04 7.79 -2.39 -0.02 2.02 16 35 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.08 1.42 7.93 -2.39 -0.02 1.40 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 39 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.05 1.45 6.66 -2.39 -0.02 1.43 16 44 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -66.78 353.46 3.27 -63.51 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 1.15 Total: 29.66 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 4.13 Total: -33.93 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -3.79 Total: -61.70 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -0.28 Total: -45.51 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.06 Total: 47.98 kcal Total: -66.78 3.27 -63.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770332921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.486 kcal (2) G-P(sol) polarization free energy of solvation -66.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds