Wall clock time and date at job start Tue Mar 31 2020 08:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48506 * 109.47277 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46922 * 239.99899 * 3 2 1 6 6 H 1.48497 * 109.47157 * 119.99789 * 3 2 1 7 7 C 1.39940 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99717 * 154.73521 * 7 2 1 9 9 C 1.41389 * 120.00354 * 334.74356 * 7 2 1 10 10 C 1.40733 * 120.24539 * 333.94222 * 9 7 2 11 11 C 1.37591 * 119.75003 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.24851 * 0.02562 * 11 10 9 13 13 C 1.38618 * 120.49968 * 359.96708 * 12 11 10 14 14 C 1.37641 * 120.24985 * 359.75487 * 13 12 11 15 15 C 1.50694 * 120.13043 * 180.28628 * 14 13 12 16 16 C 1.50707 * 109.46687 * 265.25547 * 15 14 13 17 17 O 1.21276 * 120.00176 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99735 * 180.02562 * 16 15 14 19 19 C 1.46495 * 119.99599 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47064 * 179.97438 * 19 18 16 21 21 H 1.08999 * 109.52260 * 305.12557 * 20 19 18 22 22 C 1.53181 * 109.52322 * 185.00008 * 20 19 18 23 23 C 1.53177 * 109.03458 * 183.11906 * 22 20 19 24 24 C 1.53092 * 109.16704 * 56.97843 * 23 22 20 25 25 O 1.42903 * 109.41244 * 302.39228 * 24 23 22 26 26 C 1.42904 * 114.09864 * 61.16108 * 25 24 23 27 27 H 0.97004 * 119.99632 * 174.30459 * 1 2 3 28 28 H 1.08003 * 120.12515 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87731 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.75452 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.87738 * 180.02562 * 13 12 11 32 32 H 1.08994 * 109.47341 * 25.25279 * 15 14 13 33 33 H 1.08994 * 109.47036 * 145.26039 * 15 14 13 34 34 H 0.96996 * 120.00213 * 359.97438 * 18 16 15 35 35 H 1.08999 * 109.47749 * 299.99596 * 19 18 16 36 36 H 1.09003 * 109.47317 * 60.00095 * 19 18 16 37 37 H 1.09002 * 109.53892 * 302.98096 * 22 20 19 38 38 H 1.08996 * 109.54510 * 63.24525 * 22 20 19 39 39 H 1.08999 * 109.51989 * 176.88946 * 23 22 20 40 40 H 1.09000 * 109.52118 * 297.00959 * 23 22 20 41 41 H 1.08995 * 109.47976 * 62.37308 * 24 23 22 42 42 H 1.09001 * 109.48391 * 182.39879 * 24 23 22 43 43 H 1.09003 * 109.47941 * 178.86011 * 26 25 24 44 44 H 1.08995 * 109.48003 * 58.82206 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2772 2.7465 -0.0006 5 1 3.0960 1.6965 -1.2125 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0106 -1.2567 -0.3987 9 6 1.4025 -2.3777 0.5235 10 6 0.3956 -2.2758 1.5014 11 6 -0.1863 -3.4169 2.0037 12 6 0.2162 -4.6639 1.5503 13 6 1.2069 -4.7763 0.5873 14 6 1.7989 -3.6481 0.0666 15 6 2.8711 -3.7731 -0.9849 16 6 4.2262 -3.7484 -0.3258 17 8 4.3127 -3.6395 0.8790 18 7 5.3420 -3.8464 -1.0754 19 6 6.6592 -3.8229 -0.4347 20 6 7.7480 -3.9498 -1.5022 21 1 7.5698 -4.8438 -2.0997 22 6 9.1187 -4.0509 -0.8259 23 6 10.2055 -4.0988 -1.9042 24 6 10.0864 -2.8582 -2.7933 25 8 8.7783 -2.8085 -3.3666 26 6 7.7238 -2.7149 -2.4067 27 1 -0.4850 -0.8360 -0.0834 28 1 0.0814 -1.3055 1.8569 29 1 -0.9595 -3.3411 2.7539 30 1 -0.2457 -5.5544 1.9503 31 1 1.5123 -5.7526 0.2410 32 1 2.7454 -4.7132 -1.5220 33 1 2.7924 -2.9413 -1.6848 34 1 5.2729 -3.9331 -2.0390 35 1 6.7850 -2.8832 0.1032 36 1 6.7379 -4.6553 0.2647 37 1 9.2757 -3.1808 -0.1883 38 1 9.1621 -4.9584 -0.2237 39 1 11.1874 -4.1151 -1.4312 40 1 10.0781 -4.9958 -2.5101 41 1 10.2546 -1.9637 -2.1936 42 1 10.8303 -2.9080 -3.5885 43 1 6.7655 -2.6616 -2.9235 44 1 7.8612 -1.8185 -1.8020 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776836129.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:28 Heat of formation + Delta-G solvation = -91.747214 kcal Electronic energy + Delta-G solvation = -24593.012952 eV Core-core repulsion = 21087.652394 eV Total energy + Delta-G solvation = -3505.360559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.91983 -39.01975 -37.51005 -35.36103 -33.80970 -33.42984 -31.92145 -31.15821 -29.18261 -27.38869 -25.70323 -25.30472 -24.75065 -22.34873 -20.90994 -20.69659 -20.37204 -19.41842 -17.71401 -16.74393 -16.50911 -15.99056 -15.78219 -15.29292 -14.91395 -14.81299 -14.54249 -14.13659 -14.04880 -13.61648 -13.53198 -13.09684 -12.93544 -12.68967 -12.28479 -12.11127 -11.98757 -11.71934 -11.50761 -11.33756 -11.20091 -11.05538 -11.00732 -10.80884 -10.56942 -10.43661 -10.36614 -9.71562 -9.61908 -9.34780 -9.20164 -8.92391 -8.73804 -7.52066 -7.46652 -7.08811 -4.38558 2.78280 2.88471 3.17531 3.30828 3.32472 3.39399 3.59987 3.61818 4.05076 4.44096 4.50029 4.56551 4.63051 4.63325 4.89186 5.05643 5.16715 5.32710 5.40138 5.45201 5.46329 5.49927 5.65007 5.69482 5.76798 5.81940 5.87111 5.95445 6.05156 6.13537 6.20767 6.36288 6.39547 6.71600 6.75740 6.93657 7.03519 7.24516 7.45808 7.70726 7.86373 7.88953 7.92435 7.99165 8.24898 8.38445 8.82024 8.84825 8.96524 10.11034 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014737 B = 0.003883 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.579210 B = 7208.555327 C = 8643.026538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.041 3.959 3 Si 1.060 2.940 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.117 3.883 10 C -0.216 4.216 11 C -0.087 4.087 12 C -0.253 4.253 13 C -0.070 4.070 14 C -0.184 4.184 15 C -0.070 4.070 16 C 0.514 3.486 17 O -0.521 6.521 18 N -0.747 5.747 19 C 0.128 3.872 20 C -0.133 4.133 21 H 0.085 0.915 22 C -0.116 4.116 23 C -0.155 4.155 24 C 0.058 3.942 25 O -0.382 6.382 26 C 0.064 3.936 27 H 0.299 0.701 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.395 0.605 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.263 -5.172 -6.503 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.181 4.181 3 Si 0.884 3.116 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.090 0.910 9 C 0.114 3.886 10 C -0.235 4.235 11 C -0.105 4.105 12 C -0.272 4.272 13 C -0.088 4.088 14 C -0.185 4.185 15 C -0.110 4.110 16 C 0.302 3.698 17 O -0.395 6.395 18 N -0.402 5.402 19 C 0.004 3.996 20 C -0.152 4.152 21 H 0.103 0.897 22 C -0.154 4.154 23 C -0.192 4.192 24 C -0.019 4.019 25 O -0.301 6.301 26 C -0.013 4.013 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.020 -3.433 -5.737 17.359 hybrid contribution 0.266 -1.845 -0.064 1.866 sum 16.286 -5.279 -5.800 18.076 Atomic orbital electron populations 1.70453 1.08186 1.34237 1.29425 1.26914 0.95674 1.04117 0.91395 0.83717 0.75756 0.74195 0.77952 1.19878 1.20239 1.20087 1.20431 1.02630 0.94003 1.37506 0.91000 1.17392 0.90157 0.91822 0.89262 1.21133 1.03684 0.96952 1.01708 1.20602 0.98324 0.93251 0.98347 1.20263 1.05125 0.95805 1.06024 1.20362 0.96184 0.95807 0.96455 1.19018 1.02808 0.93578 1.03125 1.20250 0.89890 1.02497 0.98380 1.21216 0.85938 0.74898 0.87756 1.90682 1.87190 1.46861 1.14721 1.46167 1.05592 1.77926 1.10501 1.21193 0.81471 1.02365 0.94598 1.22043 0.95334 1.00354 0.97498 0.89670 1.21569 0.93181 1.02980 0.97660 1.22180 0.99364 0.99634 0.98049 1.22590 0.85118 0.96740 0.97456 1.87946 1.14481 1.94574 1.33058 1.22685 0.91037 0.96265 0.91305 0.88753 0.87805 0.89394 0.89466 0.89624 0.90633 0.88616 0.77083 0.91625 0.91640 0.91331 0.91025 0.90783 0.91010 0.93148 0.88998 0.88542 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.32 12.34 55.55 0.69 -20.64 16 2 C 0.04 1.04 4.94 -17.34 -0.09 0.95 16 3 Si 1.06 22.07 30.00 -169.99 -5.10 16.97 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.52 -13.70 8.06 -37.75 -0.30 -14.00 16 8 H 0.07 1.87 6.75 -52.48 -0.35 1.51 16 9 C 0.12 3.11 5.29 -106.83 -0.56 2.55 16 10 C -0.22 -5.73 7.95 -38.88 -0.31 -6.04 16 11 C -0.09 -2.11 10.02 -39.66 -0.40 -2.51 16 12 C -0.25 -5.90 10.05 -39.29 -0.39 -6.29 16 13 C -0.07 -1.62 9.66 -39.66 -0.38 -2.00 16 14 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 15 C -0.07 -1.38 5.18 -29.03 -0.15 -1.53 16 16 C 0.51 10.02 7.46 -10.98 -0.08 9.93 16 17 O -0.52 -12.62 16.03 5.56 0.09 -12.53 16 18 N -0.75 -10.63 5.31 -60.29 -0.32 -10.95 16 19 C 0.13 1.62 5.07 -4.04 -0.02 1.60 16 20 C -0.13 -1.28 2.42 -90.47 -0.22 -1.50 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.12 -0.96 5.31 -26.55 -0.14 -1.10 16 23 C -0.15 -1.12 6.14 -26.59 -0.16 -1.28 16 24 C 0.06 0.47 6.84 37.21 0.25 0.72 16 25 O -0.38 -4.15 10.77 -35.23 -0.38 -4.53 16 26 C 0.06 0.65 5.97 37.21 0.22 0.88 16 27 H 0.30 8.17 6.70 -40.82 -0.27 7.89 16 28 H 0.10 2.84 6.54 -52.48 -0.34 2.49 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 33 H 0.10 1.85 7.07 -51.93 -0.37 1.49 16 34 H 0.40 4.44 7.69 -40.82 -0.31 4.13 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.97 7.27 -51.93 -0.38 0.59 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -31.61 356.23 -9.60 -41.20 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.74 Total: 9.62 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -3.20 Total: -24.52 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.37 Total: -31.59 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.29 Total: -17.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.10 Total: 16.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.61 -9.60 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776836129.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.544 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds