Wall clock time and date at job start Tue Mar 31 2020 08:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 119.99848 * 2 1 4 4 H 1.48498 * 109.47220 * 274.96259 * 3 2 1 5 5 H 1.48498 * 109.47030 * 34.96624 * 3 2 1 6 6 H 1.48503 * 109.46689 * 154.96162 * 3 2 1 7 7 C 1.39942 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00372 * 163.68999 * 7 2 1 9 9 C 1.41403 * 119.99823 * 343.69752 * 7 2 1 10 10 C 1.40727 * 120.24059 * 334.01559 * 9 7 2 11 11 C 1.37599 * 119.74128 * 180.02562 * 10 9 7 12 12 C 1.38656 * 120.25131 * 0.02562 * 11 10 9 13 13 C 1.38612 * 120.49841 * 359.97233 * 12 11 10 14 14 C 1.37635 * 120.24951 * 0.30089 * 13 12 11 15 15 C 1.50696 * 120.12925 * 179.69973 * 14 13 12 16 16 C 1.50700 * 109.47151 * 265.00140 * 15 14 13 17 17 O 1.21273 * 120.00241 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99989 * 179.97438 * 16 15 14 19 19 C 1.46495 * 120.00142 * 179.97438 * 18 16 15 20 20 H 1.08997 * 109.47144 * 35.00178 * 19 18 16 21 21 C 1.53003 * 109.47285 * 155.00138 * 19 18 16 22 22 C 1.53002 * 109.47345 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.46752 * 299.99768 * 22 21 19 24 24 H 1.08997 * 109.47365 * 300.00100 * 23 22 21 25 25 O 1.42906 * 109.46763 * 179.97438 * 23 22 21 26 26 C 1.53003 * 109.47006 * 60.00024 * 23 22 21 27 27 C 1.52994 * 109.47445 * 299.99805 * 26 23 22 28 28 H 0.97004 * 120.00048 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.13388 * 0.04816 * 10 9 7 30 30 H 1.08002 * 119.87508 * 180.02562 * 11 10 9 31 31 H 1.07996 * 119.75312 * 179.97438 * 12 11 10 32 32 H 1.08000 * 119.87746 * 180.02562 * 13 12 11 33 33 H 1.08998 * 109.47379 * 25.00447 * 15 14 13 34 34 H 1.09004 * 109.47477 * 144.99685 * 15 14 13 35 35 H 0.97005 * 119.99893 * 359.97438 * 18 16 15 36 36 H 1.09008 * 109.46920 * 300.00092 * 21 19 18 37 37 H 1.08998 * 109.47475 * 59.99724 * 21 19 18 38 38 H 1.09004 * 109.46797 * 59.99453 * 22 21 19 39 39 H 1.08995 * 109.47204 * 179.97438 * 22 21 19 40 40 H 0.96699 * 113.99881 * 180.02562 * 25 23 22 41 41 H 1.08998 * 109.47475 * 60.00076 * 26 23 22 42 42 H 1.09008 * 109.46920 * 179.97438 * 26 23 22 43 43 H 1.09004 * 109.46590 * 300.00481 * 27 26 23 44 44 H 1.08995 * 109.47303 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3848 2.1071 -1.3948 5 1 1.4960 2.6201 0.8024 6 1 3.5883 1.4122 0.5926 7 6 2.0080 -1.2119 0.0005 8 1 3.0553 -1.2309 -0.2621 9 6 1.3436 -2.4117 0.3448 10 6 0.2127 -2.3806 1.1817 11 6 -0.4256 -3.5544 1.5106 12 6 0.0418 -4.7646 1.0212 13 6 1.1548 -4.8070 0.1961 14 6 1.8124 -3.6460 -0.1414 15 6 3.0261 -3.6960 -1.0331 16 6 4.2715 -3.7289 -0.1852 17 8 4.1822 -3.7129 1.0242 18 7 5.4845 -3.7762 -0.7708 19 6 6.6951 -3.8076 0.0535 20 1 6.5024 -4.3808 0.9603 21 6 7.8310 -4.4646 -0.7334 22 6 9.0953 -4.4980 0.1278 23 6 9.4945 -3.0695 0.5031 24 1 9.6874 -2.4960 -0.4035 25 8 10.6750 -3.1007 1.3079 26 6 8.3586 -2.4125 1.2900 27 6 7.0944 -2.3792 0.4289 28 1 -0.4850 0.8401 0.0004 29 1 -0.1531 -1.4391 1.5641 30 1 -1.2940 -3.5330 2.1524 31 1 -0.4651 -5.6810 1.2849 32 1 1.5100 -5.7552 -0.1797 33 1 2.9849 -4.5915 -1.6531 34 1 3.0446 -2.8127 -1.6717 35 1 5.5559 -3.7894 -1.7381 36 1 7.5467 -5.4825 -1.0004 37 1 8.0237 -3.8914 -1.6402 38 1 8.9022 -5.0714 1.0345 39 1 9.9043 -4.9664 -0.4326 40 1 10.9862 -2.2277 1.5837 41 1 8.1656 -2.9859 2.1966 42 1 8.6432 -1.3949 1.5577 43 1 7.2875 -1.8057 -0.4778 44 1 6.2853 -1.9108 0.9893 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776983754.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:15:44 Heat of formation + Delta-G solvation = -94.489134 kcal Electronic energy + Delta-G solvation = -24850.619203 eV Core-core repulsion = 21345.139746 eV Total energy + Delta-G solvation = -3505.479457 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.82285 -38.55166 -37.28184 -35.86206 -33.59329 -33.12755 -31.62752 -30.97883 -29.43406 -28.57071 -26.45486 -24.92836 -22.95307 -22.31118 -20.90248 -20.33861 -20.20466 -19.16594 -17.44342 -17.16073 -16.55904 -16.07292 -15.38902 -15.16801 -14.71646 -14.52931 -14.44022 -13.91737 -13.65132 -13.32842 -13.12510 -12.98065 -12.56311 -12.44217 -12.35696 -12.10305 -11.69161 -11.56535 -11.46953 -11.29938 -11.13160 -11.01421 -10.95476 -10.74710 -10.65894 -10.42594 -10.37710 -9.95482 -9.45180 -9.34981 -9.14279 -9.09062 -8.66721 -7.28004 -7.25571 -6.71275 -4.31320 2.80378 2.99807 3.07193 3.12272 3.28755 3.37854 3.61682 3.94845 4.01730 4.50870 4.60384 4.68976 4.92461 4.98351 5.08891 5.17502 5.28656 5.35131 5.50106 5.60461 5.71471 5.81097 5.83256 5.93436 5.96838 5.99932 6.05914 6.14250 6.29977 6.32643 6.34843 6.46656 6.54420 6.83335 6.87554 7.11315 7.32885 7.41978 7.45639 7.67420 7.92751 8.00457 8.11106 8.16517 8.34715 8.67942 8.91522 8.94826 9.04874 10.23048 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.004258 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.743266 B = 6574.377104 C = 7971.497303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.082 4.082 14 C -0.180 4.180 15 C -0.072 4.072 16 C 0.515 3.485 17 O -0.520 6.520 18 N -0.743 5.743 19 C 0.145 3.855 20 H 0.086 0.914 21 C -0.122 4.122 22 C -0.108 4.108 23 C 0.103 3.897 24 H 0.055 0.945 25 O -0.571 6.571 26 C -0.148 4.148 27 C -0.129 4.129 28 H 0.279 0.721 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.395 0.605 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.377 0.623 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.064 -3.101 -3.863 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.182 4.182 15 C -0.111 4.111 16 C 0.303 3.697 17 O -0.393 6.393 18 N -0.396 5.396 19 C 0.040 3.960 20 H 0.104 0.896 21 C -0.160 4.160 22 C -0.146 4.146 23 C 0.045 3.955 24 H 0.073 0.927 25 O -0.376 6.376 26 C -0.186 4.186 27 C -0.168 4.168 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.228 0.772 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.224 0.776 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.690 -3.573 -3.064 15.426 hybrid contribution 0.357 1.502 -0.374 1.589 sum 15.047 -2.071 -3.438 15.573 Atomic orbital electron populations 1.69823 1.07457 1.28975 1.35890 1.25866 0.94672 1.01067 0.92394 0.86419 0.80915 0.81208 0.78913 1.19655 1.20036 1.18571 1.19461 0.97128 0.90970 1.41030 0.90824 1.17331 0.90762 0.91262 0.87975 1.21288 0.99070 0.96650 1.00892 1.20674 0.98645 0.93482 0.99783 1.20302 1.01600 0.96140 1.07835 1.20299 0.95924 0.95545 0.98245 1.19046 0.99099 0.94015 1.05997 1.20272 0.90698 1.02724 0.97437 1.21234 0.84320 0.74652 0.89523 1.90675 1.86699 1.47133 1.14826 1.46205 1.05535 1.78195 1.09685 1.20850 0.84038 0.95991 0.95080 0.89612 1.21761 0.94002 1.01653 0.98629 1.21396 0.97003 0.95559 1.00619 1.21878 0.84172 0.96972 0.92501 0.92749 1.86493 1.44221 1.34465 1.72459 1.22221 0.95477 1.01103 0.99836 1.21891 0.97427 0.97461 1.00049 0.91022 0.86578 0.89619 0.89700 0.89798 0.90688 0.88635 0.77203 0.90652 0.91289 0.90897 0.91008 0.77604 0.90858 0.91630 0.91841 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.62 10.97 55.55 0.61 -20.01 16 2 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 3 Si 0.90 18.84 29.59 -169.99 -5.03 13.81 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.00 8.15 -37.74 -0.31 -12.31 16 8 H 0.07 1.88 6.68 -52.49 -0.35 1.53 16 9 C 0.13 3.47 5.56 -106.82 -0.59 2.87 16 10 C -0.16 -4.31 8.68 -38.87 -0.34 -4.65 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 12 C -0.24 -5.65 10.05 -39.29 -0.39 -6.04 16 13 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 14 C -0.18 -4.34 4.43 -103.92 -0.46 -4.80 16 15 C -0.07 -1.39 5.18 -29.04 -0.15 -1.54 16 16 C 0.52 9.87 7.45 -10.98 -0.08 9.79 16 17 O -0.52 -12.36 15.70 5.56 0.09 -12.27 16 18 N -0.74 -10.45 5.08 -53.81 -0.27 -10.73 16 19 C 0.15 1.87 2.45 -67.93 -0.17 1.71 16 20 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 21 C -0.12 -1.15 5.39 -26.73 -0.14 -1.29 16 22 C -0.11 -1.03 5.57 -26.73 -0.15 -1.17 16 23 C 0.10 0.99 3.47 -26.73 -0.09 0.90 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 O -0.57 -5.60 13.32 -35.23 -0.47 -6.07 16 26 C -0.15 -1.60 5.54 -26.73 -0.15 -1.74 16 27 C -0.13 -1.67 5.50 -26.73 -0.15 -1.81 16 28 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 29 H 0.12 3.22 6.22 -52.49 -0.33 2.89 16 30 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 34 H 0.10 1.82 7.04 -51.93 -0.37 1.46 16 35 H 0.39 4.29 8.60 -40.82 -0.35 3.94 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.38 2.20 9.08 45.56 0.41 2.61 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -31.90 357.24 -9.74 -41.63 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.00 Total: 11.83 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -4.04 Total: -23.59 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.34 Total: -30.73 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.38 Total: -18.34 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.90 -9.74 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776983754.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.854 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds