Wall clock time and date at job start Tue Mar 31 2020 08:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47407 * 300.00766 * 3 2 1 6 6 H 1.48508 * 109.46756 * 60.00512 * 3 2 1 7 7 C 1.39940 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99736 * 163.61517 * 7 2 1 9 9 C 1.41393 * 120.00563 * 343.60732 * 7 2 1 10 10 C 1.40736 * 120.23739 * 334.07527 * 9 7 2 11 11 C 1.37600 * 119.74280 * 180.02562 * 10 9 7 12 12 C 1.38665 * 120.24663 * 359.71809 * 11 10 9 13 13 C 1.38617 * 120.50024 * 0.56025 * 12 11 10 14 14 C 1.37630 * 120.24594 * 359.44175 * 13 12 11 15 15 C 1.50703 * 120.12886 * 180.29951 * 14 13 12 16 16 C 1.50704 * 109.47027 * 265.00149 * 15 14 13 17 17 O 1.21275 * 119.99981 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99680 * 179.97438 * 16 15 14 19 19 C 1.46505 * 119.99841 * 179.97438 * 18 16 15 20 20 H 1.09000 * 108.94042 * 35.00084 * 19 18 16 21 21 C 1.46290 * 108.96042 * 153.76261 * 19 18 16 22 22 C 1.54204 * 112.06978 * 181.56167 * 21 19 18 23 23 C 1.50411 * 108.76867 * 282.18604 * 22 21 19 24 24 O 1.44190 * 112.77030 * 92.57937 * 23 22 21 25 25 C 1.44185 * 116.93084 * 318.48020 * 24 23 22 26 26 C 1.50483 * 112.69927 * 318.46778 * 25 24 23 27 27 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.13131 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.88275 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.75085 * 180.29721 * 12 11 10 31 31 H 1.07994 * 119.87339 * 179.72066 * 13 12 11 32 32 H 1.09003 * 109.46751 * 25.00087 * 15 14 13 33 33 H 1.09000 * 109.47220 * 144.99522 * 15 14 13 34 34 H 0.96996 * 120.00178 * 359.97438 * 18 16 15 35 35 H 1.08999 * 108.96103 * 302.22835 * 21 19 18 36 36 H 1.08995 * 108.95818 * 60.89310 * 21 19 18 37 37 H 1.09000 * 109.58959 * 41.97470 * 22 21 19 38 38 H 1.08999 * 109.58004 * 162.25997 * 22 21 19 39 39 H 1.08999 * 108.82249 * 213.42989 * 23 22 21 40 40 H 1.09002 * 108.82386 * 331.73571 * 23 22 21 41 41 H 1.08996 * 108.81937 * 79.32211 * 25 24 23 42 42 H 1.08997 * 108.81854 * 197.73632 * 25 24 23 43 43 H 1.09001 * 109.66424 * 332.86666 * 26 25 24 44 44 H 1.09005 * 109.53617 * 212.42286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2123 6 1 1.8835 2.3964 1.2127 7 6 2.0079 -1.2119 -0.0005 8 1 3.0550 -1.2308 -0.2644 9 6 1.3441 -2.4118 0.3445 10 6 0.2135 -2.3806 1.1820 11 6 -0.4243 -3.5545 1.5117 12 6 0.0395 -4.7641 1.0173 13 6 1.1556 -4.8072 0.1963 14 6 1.8092 -3.6455 -0.1465 15 6 3.0183 -3.6947 -1.0448 16 6 4.2683 -3.7242 -0.2035 17 8 4.1855 -3.7066 1.0063 18 7 5.4781 -3.7703 -0.7956 19 6 6.6933 -3.7984 0.0222 20 1 6.4970 -4.3723 0.9279 21 6 7.7602 -4.4540 -0.7341 22 6 9.0670 -4.5572 0.0781 23 6 9.7503 -3.2173 0.0676 24 8 9.3907 -2.3986 1.1988 25 6 8.0033 -2.4005 1.5915 26 6 7.0666 -2.3547 0.4148 27 1 -0.4851 0.8400 0.0004 28 1 -0.1516 -1.4393 1.5651 29 1 -1.2918 -3.5333 2.1546 30 1 -0.4701 -5.6802 1.2773 31 1 1.5107 -5.7553 -0.1794 32 1 2.9752 -4.5913 -1.6632 33 1 3.0317 -2.8124 -1.6847 34 1 5.5443 -3.7848 -1.7632 35 1 7.4342 -5.4570 -1.0095 36 1 7.9520 -3.8837 -1.6429 37 1 8.8376 -4.8425 1.1048 38 1 9.7188 -5.3057 -0.3723 39 1 10.8291 -3.3726 0.0747 40 1 9.4788 -2.6912 -0.8477 41 1 7.8022 -3.3040 2.1672 42 1 7.8156 -1.5324 2.2233 43 1 7.5568 -1.8627 -0.4253 44 1 6.1654 -1.8054 0.6874 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776990025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:12 Heat of formation + Delta-G solvation = -74.956896 kcal Electronic energy + Delta-G solvation = -25136.122935 eV Core-core repulsion = 21631.490459 eV Total energy + Delta-G solvation = -3504.632476 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.12854 -38.67783 -37.29325 -35.50086 -33.60082 -32.96831 -32.00091 -31.15925 -29.42973 -27.54559 -26.52418 -25.22720 -24.65114 -21.06292 -20.93913 -20.87354 -20.26061 -19.22631 -17.20980 -16.98839 -16.78189 -16.26919 -15.47705 -15.24284 -15.04715 -14.50240 -14.38560 -13.95323 -13.57865 -13.54896 -13.17991 -13.11956 -12.93585 -12.58233 -12.53014 -11.77853 -11.66009 -11.56161 -11.42742 -11.23890 -11.11534 -10.97244 -10.90593 -10.81818 -10.65943 -10.63199 -10.37074 -9.59024 -9.46394 -9.35178 -9.15837 -9.11284 -8.72064 -7.29022 -7.26913 -6.71975 -4.32344 2.79280 2.98497 3.08395 3.13156 3.28050 3.34406 3.56560 3.71866 3.94828 4.48336 4.61802 4.68158 4.73756 4.83346 5.10261 5.21072 5.34172 5.39331 5.48981 5.55909 5.56972 5.71708 5.75711 5.82151 5.90548 5.97977 6.04181 6.08213 6.20471 6.27619 6.30534 6.45179 6.53133 6.81028 6.82974 7.10672 7.14885 7.31765 7.44470 7.66279 7.90278 7.97895 8.09901 8.15379 8.33700 8.67055 8.87999 8.93927 9.03823 10.22327 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.004575 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.252979 B = 6118.997651 C = 7517.838858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.901 3.099 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.456 4.456 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.082 4.082 14 C -0.180 4.180 15 C -0.071 4.071 16 C 0.515 3.485 17 O -0.519 6.519 18 N -0.744 5.744 19 C 0.146 3.854 20 H 0.084 0.916 21 C -0.130 4.130 22 C -0.149 4.149 23 C 0.062 3.938 24 O -0.397 6.397 25 C 0.067 3.933 26 C -0.165 4.165 27 H 0.279 0.721 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.394 0.606 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.512 -5.070 -4.160 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.182 4.182 15 C -0.111 4.111 16 C 0.303 3.697 17 O -0.393 6.393 18 N -0.398 5.398 19 C 0.041 3.959 20 H 0.102 0.898 21 C -0.168 4.168 22 C -0.187 4.187 23 C -0.014 4.014 24 O -0.317 6.317 25 C -0.010 4.010 26 C -0.203 4.203 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.228 0.772 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.344 -4.792 -3.177 15.453 hybrid contribution 0.074 0.628 -0.660 0.915 sum 14.417 -4.163 -3.837 15.489 Atomic orbital electron populations 1.69827 1.07461 1.28929 1.35884 1.25870 0.94679 1.01097 0.92374 0.86373 0.81054 0.81417 0.78559 1.18530 1.20052 1.19705 1.19487 0.97177 0.90948 1.40946 0.90797 1.17335 0.90748 0.91273 0.87978 1.21290 0.99062 0.96640 1.00861 1.20678 0.98681 0.93483 0.99737 1.20305 1.01481 0.96166 1.07933 1.20292 0.95910 0.95516 0.98275 1.19049 0.99300 0.94015 1.05855 1.20276 0.90642 1.02709 0.97481 1.21246 0.84376 0.74623 0.89490 1.90674 1.86772 1.47087 1.14722 1.46334 1.05501 1.78286 1.09672 1.19904 0.84635 0.95714 0.95616 0.89833 1.20933 0.94967 1.01658 0.99277 1.21851 0.96683 0.98338 1.01878 1.22284 0.99296 0.90374 0.89454 1.88247 1.25950 1.67832 1.49701 1.22251 0.80273 1.02372 0.96061 1.22372 1.01001 0.97855 0.99102 0.91042 0.86571 0.89609 0.89704 0.89832 0.90720 0.88621 0.77236 0.90990 0.91346 0.90399 0.90113 0.89758 0.93165 0.92851 0.89209 0.90886 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.57 10.97 55.55 0.61 -19.96 16 2 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 3 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 7 C -0.46 -11.96 8.14 -37.74 -0.31 -12.26 16 8 H 0.07 1.89 6.68 -52.48 -0.35 1.54 16 9 C 0.13 3.45 5.56 -106.82 -0.59 2.86 16 10 C -0.16 -4.28 8.68 -38.87 -0.34 -4.62 16 11 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 12 C -0.24 -5.62 10.05 -39.28 -0.39 -6.01 16 13 C -0.08 -1.89 9.66 -39.66 -0.38 -2.28 16 14 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16 15 C -0.07 -1.38 5.18 -29.03 -0.15 -1.53 16 16 C 0.52 9.77 7.28 -10.98 -0.08 9.69 16 17 O -0.52 -12.15 15.68 5.56 0.09 -12.07 16 18 N -0.74 -10.40 5.02 -56.32 -0.28 -10.69 16 19 C 0.15 1.86 2.01 -70.49 -0.14 1.72 16 20 H 0.08 1.25 6.96 -51.93 -0.36 0.89 16 21 C -0.13 -1.20 4.69 -29.29 -0.14 -1.34 16 22 C -0.15 -1.26 5.61 -27.39 -0.15 -1.41 16 23 C 0.06 0.58 6.26 35.87 0.22 0.81 16 24 O -0.40 -4.97 10.88 -35.23 -0.38 -5.36 16 25 C 0.07 0.85 6.27 35.90 0.22 1.07 16 26 C -0.16 -2.20 5.18 -27.36 -0.14 -2.34 16 27 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 28 H 0.12 3.21 6.22 -52.49 -0.33 2.88 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 33 H 0.10 1.82 7.06 -51.93 -0.37 1.46 16 34 H 0.39 4.29 8.57 -40.82 -0.35 3.94 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 37 H 0.08 0.73 7.15 -51.93 -0.37 0.36 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.45 6.67 -51.93 -0.35 0.10 16 41 H 0.05 0.67 6.67 -51.93 -0.35 0.32 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 0.90 7.14 -51.93 -0.37 0.53 16 44 H 0.09 1.46 7.99 -51.93 -0.41 1.04 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -30.97 349.39 -9.56 -40.54 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.51 Total: 10.02 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.32 Total: -21.63 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.33 Total: -30.65 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.30 Total: -17.42 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.97 -9.56 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776990025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.420 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds