Wall clock time and date at job start Tue Mar 31 2020 08:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47407 * 300.00766 * 3 2 1 6 6 H 1.48508 * 109.46756 * 60.00512 * 3 2 1 7 7 C 1.39940 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99736 * 163.61517 * 7 2 1 9 9 C 1.41393 * 120.00563 * 343.60732 * 7 2 1 10 10 C 1.40736 * 120.23739 * 334.07527 * 9 7 2 11 11 C 1.37600 * 119.74280 * 180.02562 * 10 9 7 12 12 C 1.38665 * 120.24663 * 359.71809 * 11 10 9 13 13 C 1.38617 * 120.50024 * 0.56025 * 12 11 10 14 14 C 1.37630 * 120.24594 * 359.44175 * 13 12 11 15 15 C 1.50703 * 120.12886 * 180.29951 * 14 13 12 16 16 C 1.50704 * 109.47027 * 265.00149 * 15 14 13 17 17 O 1.21275 * 119.99981 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99680 * 179.97438 * 16 15 14 19 19 C 1.46505 * 119.99841 * 179.97438 * 18 16 15 20 20 H 1.09000 * 108.94042 * 35.00084 * 19 18 16 21 21 C 1.46290 * 108.96042 * 153.76261 * 19 18 16 22 22 C 1.54204 * 112.06978 * 181.56167 * 21 19 18 23 23 C 1.50411 * 108.76867 * 282.18604 * 22 21 19 24 24 O 1.44190 * 112.77030 * 92.57937 * 23 22 21 25 25 C 1.44185 * 116.93084 * 318.48020 * 24 23 22 26 26 C 1.50483 * 112.69927 * 318.46778 * 25 24 23 27 27 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 28 28 H 1.07992 * 120.13131 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.88275 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.75085 * 180.29721 * 12 11 10 31 31 H 1.07994 * 119.87339 * 179.72066 * 13 12 11 32 32 H 1.09003 * 109.46751 * 25.00087 * 15 14 13 33 33 H 1.09000 * 109.47220 * 144.99522 * 15 14 13 34 34 H 0.96996 * 120.00178 * 359.97438 * 18 16 15 35 35 H 1.08999 * 108.96103 * 302.22835 * 21 19 18 36 36 H 1.08995 * 108.95818 * 60.89310 * 21 19 18 37 37 H 1.09000 * 109.58959 * 41.97470 * 22 21 19 38 38 H 1.08999 * 109.58004 * 162.25997 * 22 21 19 39 39 H 1.08999 * 108.82249 * 213.42989 * 23 22 21 40 40 H 1.09002 * 108.82386 * 331.73571 * 23 22 21 41 41 H 1.08996 * 108.81937 * 79.32211 * 25 24 23 42 42 H 1.08997 * 108.81854 * 197.73632 * 25 24 23 43 43 H 1.09001 * 109.66424 * 332.86666 * 26 25 24 44 44 H 1.09005 * 109.53617 * 212.42286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2123 6 1 1.8835 2.3964 1.2127 7 6 2.0079 -1.2119 -0.0005 8 1 3.0550 -1.2308 -0.2644 9 6 1.3441 -2.4118 0.3445 10 6 0.2135 -2.3806 1.1820 11 6 -0.4243 -3.5545 1.5117 12 6 0.0395 -4.7641 1.0173 13 6 1.1556 -4.8072 0.1963 14 6 1.8092 -3.6455 -0.1465 15 6 3.0183 -3.6947 -1.0448 16 6 4.2683 -3.7242 -0.2035 17 8 4.1855 -3.7066 1.0063 18 7 5.4781 -3.7703 -0.7956 19 6 6.6933 -3.7984 0.0222 20 1 6.4970 -4.3723 0.9279 21 6 7.7602 -4.4540 -0.7341 22 6 9.0670 -4.5572 0.0781 23 6 9.7503 -3.2173 0.0676 24 8 9.3907 -2.3986 1.1988 25 6 8.0033 -2.4005 1.5915 26 6 7.0666 -2.3547 0.4148 27 1 -0.4851 0.8400 0.0004 28 1 -0.1516 -1.4393 1.5651 29 1 -1.2918 -3.5333 2.1546 30 1 -0.4701 -5.6802 1.2773 31 1 1.5107 -5.7553 -0.1794 32 1 2.9752 -4.5913 -1.6632 33 1 3.0317 -2.8124 -1.6847 34 1 5.5443 -3.7848 -1.7632 35 1 7.4342 -5.4570 -1.0095 36 1 7.9520 -3.8837 -1.6429 37 1 8.8376 -4.8425 1.1048 38 1 9.7188 -5.3057 -0.3723 39 1 10.8291 -3.3726 0.0747 40 1 9.4788 -2.6912 -0.8477 41 1 7.8022 -3.3040 2.1672 42 1 7.8156 -1.5324 2.2233 43 1 7.5568 -1.8627 -0.4253 44 1 6.1654 -1.8054 0.6874 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776990025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:11 Heat of formation + Delta-G solvation = -94.071254 kcal Electronic energy + Delta-G solvation = -25136.951795 eV Core-core repulsion = 21631.490459 eV Total energy + Delta-G solvation = -3505.461337 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30547 -40.02005 -38.98489 -36.65798 -35.49850 -33.99441 -33.46657 -32.50155 -31.33416 -28.89862 -27.77509 -26.85484 -25.87614 -22.82972 -22.37736 -21.90475 -21.43310 -20.78965 -19.07229 -18.06400 -17.91326 -17.46917 -17.25865 -16.44588 -16.36009 -16.01967 -15.81951 -15.36540 -15.02954 -14.68105 -14.63197 -14.39979 -14.34830 -13.96032 -13.53724 -13.41705 -13.37696 -12.91993 -12.77471 -12.73779 -12.54361 -12.45011 -12.30206 -12.12169 -12.04300 -11.76800 -11.43056 -11.31739 -11.20301 -11.03543 -10.68793 -10.48325 -9.99756 -9.22353 -9.15594 -8.59895 -6.29113 0.98917 1.13457 1.34734 1.47519 1.51123 1.85853 2.18690 2.33532 2.78389 2.82705 3.60826 3.75262 3.76998 3.92150 4.03423 4.10614 4.17015 4.35159 4.41351 4.46269 4.47271 4.60728 4.62389 4.67013 4.71534 4.75323 4.81778 4.85619 4.98119 5.05958 5.11751 5.13324 5.19595 5.21441 5.29779 5.37057 5.55253 5.61563 5.78096 6.04306 6.17274 6.21830 6.27078 6.42355 6.69099 6.76604 6.99674 7.11867 7.48420 8.36848 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.004575 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.252979 B = 6118.997651 C = 7517.838858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.037 3.963 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.270 1.270 7 C -0.481 4.481 8 H 0.071 0.929 9 C 0.096 3.904 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.243 4.243 13 C -0.092 4.092 14 C -0.186 4.186 15 C -0.071 4.071 16 C 0.517 3.483 17 O -0.572 6.572 18 N -0.723 5.723 19 C 0.150 3.850 20 H 0.059 0.941 21 C -0.126 4.126 22 C -0.143 4.143 23 C 0.053 3.947 24 O -0.413 6.413 25 C 0.072 3.928 26 C -0.158 4.158 27 H 0.285 0.715 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.413 0.587 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.619 -6.195 -5.999 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.195 1.195 7 C -0.510 4.510 8 H 0.089 0.911 9 C 0.094 3.906 10 C -0.214 4.214 11 C -0.137 4.137 12 C -0.262 4.262 13 C -0.110 4.110 14 C -0.188 4.188 15 C -0.110 4.110 16 C 0.305 3.695 17 O -0.450 6.450 18 N -0.376 5.376 19 C 0.045 3.955 20 H 0.077 0.923 21 C -0.164 4.164 22 C -0.181 4.181 23 C -0.023 4.023 24 O -0.333 6.333 25 C -0.005 4.005 26 C -0.197 4.197 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.250 0.750 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 16.477 -5.933 -5.072 18.232 hybrid contribution -0.567 0.867 -0.099 1.040 sum 15.911 -5.066 -5.171 17.480 Atomic orbital electron populations 1.69885 1.08782 1.30100 1.36539 1.26637 0.95389 1.04089 0.91620 0.85359 0.79415 0.77212 0.78978 1.18625 1.18466 1.19523 1.19625 0.97112 0.91890 1.42413 0.91094 1.17729 0.91306 0.92844 0.88715 1.21300 1.00665 0.96754 1.02663 1.20949 0.99225 0.93437 1.00053 1.20719 1.01549 0.96724 1.07175 1.20737 0.95651 0.96675 0.97941 1.19553 1.00426 0.93387 1.05454 1.20296 0.89193 1.04548 0.96977 1.21113 0.85604 0.74148 0.88606 1.90660 1.87602 1.49908 1.16833 1.46107 1.04553 1.76165 1.10824 1.19998 0.85012 0.95268 0.95182 0.92294 1.20906 0.93968 1.02090 0.99439 1.21838 0.96503 0.98556 1.01250 1.22573 1.00650 0.90489 0.88588 1.88229 1.25128 1.68875 1.51101 1.22100 0.80708 1.01969 0.95689 1.22276 0.99591 0.97938 0.99902 0.90413 0.88643 0.87780 0.86734 0.86530 0.86927 0.88578 0.74975 0.89781 0.89379 0.91745 0.87205 0.87747 0.92376 0.93251 0.89819 0.89482 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.19 10.97 21.82 0.24 -43.96 16 2 C 0.04 1.90 5.16 85.26 0.44 2.34 16 3 Si 0.97 39.52 29.59 68.60 2.03 41.55 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.48 -26.05 8.14 23.46 0.19 -25.86 16 8 H 0.07 3.74 6.68 -2.91 -0.02 3.73 16 9 C 0.10 5.31 5.56 -21.29 -0.12 5.19 16 10 C -0.19 -10.87 8.68 22.73 0.20 -10.68 16 11 C -0.12 -5.90 10.02 22.22 0.22 -5.68 16 12 C -0.24 -11.13 10.05 22.46 0.23 -10.90 16 13 C -0.09 -4.15 9.66 22.22 0.21 -3.93 16 14 C -0.19 -8.96 4.43 -19.41 -0.09 -9.05 16 15 C -0.07 -2.65 5.18 29.10 0.15 -2.50 16 16 C 0.52 19.38 7.28 87.66 0.64 20.02 16 17 O -0.57 -27.39 15.68 -3.01 -0.05 -27.44 16 18 N -0.72 -19.04 5.02 -450.50 -2.26 -21.30 16 19 C 0.15 3.64 2.01 43.33 0.09 3.72 16 20 H 0.06 1.76 6.96 -2.39 -0.02 1.74 16 21 C -0.13 -1.93 4.69 28.93 0.14 -1.80 16 22 C -0.14 -1.98 5.61 30.17 0.17 -1.81 16 23 C 0.05 0.83 6.26 71.15 0.45 1.28 16 24 O -0.41 -9.80 10.88 -148.98 -1.62 -11.42 16 25 C 0.07 1.83 6.27 71.17 0.45 2.28 16 26 C -0.16 -4.18 5.18 30.19 0.16 -4.02 16 27 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 28 H 0.10 5.60 6.22 -2.91 -0.02 5.58 16 29 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 30 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 31 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.11 3.30 8.05 -2.39 -0.02 3.28 16 33 H 0.10 3.60 7.06 -2.39 -0.02 3.58 16 34 H 0.41 7.78 8.57 -92.71 -0.79 6.99 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.06 7.56 -2.39 -0.02 1.04 16 37 H 0.06 1.10 7.15 -2.39 -0.02 1.08 16 38 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 0.84 6.67 -2.39 -0.02 0.83 16 41 H 0.05 1.27 6.67 -2.39 -0.02 1.26 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.09 2.01 7.14 -2.39 -0.02 2.00 16 44 H 0.05 1.76 7.99 -2.38 -0.02 1.74 16 Total: -1.00 -70.51 349.39 2.07 -68.44 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 0.22 Total: 35.52 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 3.52 Total: -41.40 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -2.02 Total: -65.26 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.67 Total: -38.86 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -70.51 2.07 -68.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776990025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.627 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds