Wall clock time and date at job start Tue Mar 31 2020 07:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86800 * 120.00217 * 2 1 4 4 H 1.48491 * 109.47398 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47083 * 300.00326 * 3 2 1 6 6 H 1.48498 * 109.46937 * 60.00079 * 3 2 1 7 7 C 1.39944 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00215 * 163.66240 * 7 2 1 9 9 C 1.41391 * 120.00108 * 343.65995 * 7 2 1 10 10 C 1.40739 * 120.24457 * 334.04835 * 9 7 2 11 11 C 1.37594 * 119.74438 * 179.72452 * 10 9 7 12 12 C 1.38657 * 120.25136 * 0.25239 * 11 10 9 13 13 C 1.38610 * 120.50115 * 359.97438 * 12 11 10 14 14 C 1.37639 * 120.24855 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.13207 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.47233 * 265.00685 * 15 14 13 17 17 O 1.21278 * 119.99926 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99826 * 179.97438 * 16 15 14 19 19 C 1.46930 * 120.63016 * 359.71915 * 18 16 15 20 20 C 1.53626 * 108.54171 * 126.36811 * 19 18 16 21 21 C 1.53043 * 109.24157 * 54.85443 * 20 19 18 22 22 C 1.53001 * 109.45904 * 178.49031 * 21 20 19 23 23 O 1.42903 * 109.47113 * 295.06846 * 22 21 20 24 24 C 1.53036 * 109.53787 * 298.50866 * 21 20 19 25 25 C 1.46925 * 120.63026 * 179.97438 * 18 16 15 26 26 H 0.97001 * 119.99886 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.12387 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.87467 * 180.22903 * 11 10 9 29 29 H 1.07995 * 119.75025 * 179.97438 * 12 11 10 30 30 H 1.07995 * 119.87875 * 180.02562 * 13 12 11 31 31 H 1.09008 * 109.46983 * 25.00266 * 15 14 13 32 32 H 1.08995 * 109.47372 * 145.00555 * 15 14 13 33 33 H 1.08998 * 109.58382 * 246.20125 * 19 18 16 34 34 H 1.08993 * 109.58922 * 6.62541 * 19 18 16 35 35 H 1.09003 * 109.63507 * 294.86236 * 20 19 18 36 36 H 1.09003 * 109.45774 * 174.73958 * 20 19 18 37 37 H 1.09002 * 109.44853 * 58.52383 * 21 20 19 38 38 H 1.08993 * 109.47021 * 55.06417 * 22 21 20 39 39 H 1.09000 * 109.47202 * 175.07333 * 22 21 20 40 40 H 0.96702 * 113.99971 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.50358 * 301.41562 * 24 21 20 42 42 H 1.09001 * 109.52360 * 181.32933 * 24 21 20 43 43 H 1.09002 * 109.58460 * 353.37598 * 25 18 16 44 44 H 1.09002 * 109.58600 * 113.65812 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0552 -1.2308 -0.2637 9 6 1.3437 -2.4119 0.3434 10 6 0.2128 -2.3813 1.1805 11 6 -0.4290 -3.5546 1.5040 12 6 0.0376 -4.7644 1.0129 13 6 1.1533 -4.8070 0.1916 14 6 1.8111 -3.6458 -0.1452 15 6 3.0242 -3.6952 -1.0379 16 6 4.2702 -3.7297 -0.1909 17 8 4.1819 -3.7151 1.0186 18 7 5.4827 -3.7768 -0.7775 19 6 5.6056 -3.8012 -2.2415 20 6 6.5442 -2.6638 -2.6720 21 6 7.8746 -2.7987 -1.9275 22 6 8.8268 -1.6902 -2.3805 23 8 9.1450 -1.8705 -3.7620 24 6 7.6326 -2.6789 -0.4212 25 6 6.7065 -3.8103 0.0348 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1523 -1.4400 1.5641 28 1 -1.2993 -3.5331 2.1432 29 1 -0.4721 -5.6805 1.2724 30 1 1.5078 -5.7548 -0.1856 31 1 2.9821 -4.5901 -1.6589 32 1 3.0425 -2.8112 -1.6753 33 1 6.0188 -4.7591 -2.5575 34 1 4.6241 -3.6575 -2.6930 35 1 6.0891 -1.7028 -2.4324 36 1 6.7204 -2.7253 -3.7459 37 1 8.3170 -3.7702 -2.1481 38 1 8.3483 -0.7208 -2.2415 39 1 9.7412 -1.7323 -1.7887 40 1 9.7459 -1.2016 -4.1178 41 1 7.1672 -1.7178 -0.2027 42 1 8.5831 -2.7514 0.1074 43 1 6.4515 -3.6726 1.0856 44 1 7.2065 -4.7699 -0.0971 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777419579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:52 Heat of formation + Delta-G solvation = -80.705437 kcal Electronic energy + Delta-G solvation = -25210.137685 eV Core-core repulsion = 21705.255934 eV Total energy + Delta-G solvation = -3504.881751 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.88527 -38.13792 -37.21364 -36.12559 -33.57960 -33.05976 -31.81852 -30.78899 -29.40582 -27.68445 -26.39235 -24.95142 -23.26933 -22.87425 -20.89446 -20.69994 -19.74099 -18.48119 -17.46840 -17.10750 -16.58010 -15.59189 -15.42186 -15.24156 -14.83192 -14.51370 -14.40517 -13.93326 -13.71522 -13.52302 -13.25551 -12.80214 -12.62495 -12.54577 -12.41101 -12.19372 -11.65481 -11.53627 -11.23711 -11.13555 -11.01232 -10.95792 -10.88460 -10.65331 -10.63286 -10.53778 -10.35346 -10.12874 -9.43496 -9.30894 -9.13360 -9.05680 -8.28735 -7.26469 -7.23896 -6.69963 -4.29807 2.80694 3.00152 3.08508 3.13564 3.29806 3.35657 3.48399 3.96124 3.98687 4.59545 4.67923 4.71034 4.91599 5.09943 5.18692 5.25781 5.34384 5.36698 5.46546 5.58467 5.70495 5.81232 5.85620 5.88375 5.92242 5.99234 6.08016 6.10577 6.23962 6.32960 6.34256 6.47733 6.55768 6.82852 6.91430 7.12948 7.34323 7.38463 7.47020 7.68292 7.85903 7.98470 8.12255 8.17841 8.36294 8.69450 8.88825 8.96384 9.06350 10.24406 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.004939 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.198415 B = 5667.601338 C = 7121.048630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.901 3.099 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.455 4.455 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.082 4.082 14 C -0.180 4.180 15 C -0.069 4.069 16 C 0.519 3.481 17 O -0.522 6.522 18 N -0.627 5.627 19 C 0.110 3.890 20 C -0.127 4.127 21 C -0.085 4.085 22 C 0.080 3.920 23 O -0.573 6.573 24 C -0.129 4.129 25 C 0.115 3.885 26 H 0.278 0.722 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.377 0.623 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.799 -1.976 -6.525 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.126 3.874 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.182 4.182 15 C -0.109 4.109 16 C 0.308 3.692 17 O -0.396 6.396 18 N -0.363 5.363 19 C -0.014 4.014 20 C -0.166 4.166 21 C -0.104 4.104 22 C 0.002 3.998 23 O -0.378 6.378 24 C -0.167 4.167 25 C -0.008 4.008 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.223 0.777 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.120 -2.318 -5.780 15.432 hybrid contribution 0.801 1.350 -0.090 1.572 sum 14.921 -0.968 -5.870 16.063 Atomic orbital electron populations 1.69829 1.07436 1.28871 1.36010 1.25864 0.94674 1.01056 0.92408 0.86376 0.81046 0.81468 0.78526 1.18582 1.20047 1.19735 1.19488 0.97153 0.90941 1.40904 0.90829 1.17338 0.90780 0.91268 0.87976 1.21287 0.99019 0.96656 1.00907 1.20670 0.98628 0.93482 0.99809 1.20300 1.01482 0.96153 1.07918 1.20296 0.95906 0.95534 0.98266 1.19079 0.99114 0.94047 1.05932 1.20291 0.90627 1.02533 0.97433 1.21245 0.84118 0.74555 0.89253 1.90659 1.86232 1.47880 1.14827 1.48261 1.05821 1.75830 1.06427 1.21774 1.00994 0.98174 0.80431 1.22003 0.94562 0.99465 1.00520 1.21115 0.95381 0.98916 0.94968 1.22255 0.97366 0.98276 0.81908 1.86473 1.69928 1.55845 1.25568 1.21905 0.99791 1.00378 0.94630 1.21393 0.84965 0.97203 0.97255 0.91075 0.86572 0.89614 0.89690 0.89804 0.90730 0.88627 0.91872 0.89172 0.91315 0.90225 0.90469 0.93531 0.93801 0.77655 0.91111 0.91004 0.88953 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.75 10.97 55.55 0.61 -20.14 16 2 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 3 Si 0.90 19.06 29.59 -169.99 -5.03 14.03 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 7 C -0.45 -12.13 8.15 -37.74 -0.31 -12.44 16 8 H 0.07 1.93 6.68 -52.48 -0.35 1.58 16 9 C 0.13 3.50 5.56 -106.82 -0.59 2.90 16 10 C -0.16 -4.33 8.68 -38.87 -0.34 -4.67 16 11 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 12 C -0.24 -5.69 10.05 -39.29 -0.39 -6.08 16 13 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 14 C -0.18 -4.42 4.43 -103.91 -0.46 -4.88 16 15 C -0.07 -1.40 3.53 -29.03 -0.10 -1.50 16 16 C 0.52 10.52 7.35 -10.98 -0.08 10.44 16 17 O -0.52 -12.83 15.45 5.56 0.09 -12.74 16 18 N -0.63 -9.86 2.97 -172.52 -0.51 -10.37 16 19 C 0.11 1.36 6.37 -3.48 -0.02 1.34 16 20 C -0.13 -1.47 5.29 -26.38 -0.14 -1.61 16 21 C -0.09 -0.89 2.39 -90.58 -0.22 -1.11 16 22 C 0.08 0.73 6.43 37.16 0.24 0.96 16 23 O -0.57 -5.29 13.17 -35.23 -0.46 -5.76 16 24 C -0.13 -1.45 5.36 -26.63 -0.14 -1.59 16 25 C 0.11 1.57 6.43 -3.73 -0.02 1.55 16 26 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 27 H 0.12 3.24 6.22 -52.49 -0.33 2.91 16 28 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 29 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.07 1.28 7.84 -51.92 -0.41 0.87 16 32 H 0.10 1.91 6.60 -51.93 -0.34 1.57 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.11 5.93 -51.93 -0.31 0.80 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.87 7.79 -51.93 -0.40 0.46 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 1.81 9.12 45.56 0.42 2.23 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.46 7.01 -51.93 -0.36 1.10 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -32.24 353.10 -9.32 -41.55 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.87 Total: 8.30 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -3.45 Total: -20.20 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.10 Total: -30.52 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.38 Total: -18.50 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.24 -9.32 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777419579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.151 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds