Wall clock time and date at job start Tue Mar 31 2020 08:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86803 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47078 * 300.00150 * 3 2 1 6 6 H 1.48499 * 109.46761 * 60.00009 * 3 2 1 7 7 C 1.39947 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00701 * 183.65213 * 7 2 1 9 9 C 1.41400 * 119.99718 * 3.65408 * 7 2 1 10 10 C 1.40732 * 120.24279 * 325.69840 * 9 7 2 11 11 C 1.37604 * 119.74339 * 180.27702 * 10 9 7 12 12 C 1.38661 * 120.24779 * 359.70228 * 11 10 9 13 13 C 1.38609 * 120.49856 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.25143 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.12908 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47118 * 265.00039 * 15 14 13 17 17 O 1.21279 * 120.00064 * 5.10860 * 16 15 14 18 18 N 1.34773 * 119.99724 * 185.11297 * 16 15 14 19 19 C 1.46500 * 120.00461 * 356.86879 * 18 16 15 20 20 C 1.52998 * 109.47428 * 89.99927 * 19 18 16 21 21 C 1.53000 * 109.47066 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.46811 * 180.02562 * 21 20 19 23 23 C 1.46502 * 119.99946 * 176.86473 * 18 16 15 24 24 C 1.53003 * 117.49874 * 16.95718 * 23 18 16 25 25 C 1.52997 * 60.00014 * 252.50909 * 24 23 18 26 26 H 0.97001 * 119.99991 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.13280 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.87712 * 179.72292 * 11 10 9 29 29 H 1.07995 * 119.74862 * 180.02562 * 12 11 10 30 30 H 1.08001 * 119.86956 * 179.97438 * 13 12 11 31 31 H 1.08997 * 109.47289 * 144.99431 * 15 14 13 32 32 H 1.09005 * 109.47006 * 24.99749 * 15 14 13 33 33 H 1.09003 * 109.46479 * 329.99827 * 19 18 16 34 34 H 1.09005 * 109.46917 * 210.00476 * 19 18 16 35 35 H 1.09001 * 109.46815 * 300.00265 * 20 19 18 36 36 H 1.08998 * 109.47108 * 59.99759 * 20 19 18 37 37 H 1.09001 * 109.47092 * 299.99571 * 21 20 19 38 38 H 1.08995 * 109.47351 * 59.99903 * 21 20 19 39 39 H 0.96699 * 113.99882 * 180.02562 * 22 21 20 40 40 H 1.09000 * 115.55428 * 162.66051 * 23 18 16 41 41 H 1.09003 * 117.49384 * 359.97438 * 24 23 18 42 42 H 1.08994 * 117.50200 * 145.02089 * 24 23 18 43 43 H 1.09001 * 117.49835 * 252.51026 * 25 24 23 44 44 H 1.09007 * 117.52401 * 107.47836 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8835 2.3964 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0863 -1.2130 0.0590 9 6 1.3031 -2.4352 -0.0791 10 6 0.0430 -2.5679 0.5334 11 6 -0.6314 -3.7648 0.4554 12 6 -0.0767 -4.8357 -0.2288 13 6 1.1611 -4.7146 -0.8407 14 6 1.8535 -3.5268 -0.7755 15 6 3.1988 -3.3980 -1.4423 16 6 4.2866 -3.6710 -0.4356 17 8 3.9984 -4.0336 0.6852 18 7 5.5796 -3.5122 -0.7810 19 6 5.9309 -3.1407 -2.1539 20 6 5.9774 -1.6161 -2.2737 21 6 6.3436 -1.2283 -3.7077 22 8 6.3877 0.1957 -3.8194 23 6 6.6339 -3.7109 0.2166 24 6 6.2644 -4.4680 1.4938 25 6 6.5037 -2.9576 1.5419 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3908 -1.7351 1.0669 28 1 -1.5965 -3.8703 0.9285 29 1 -0.6133 -5.7713 -0.2853 30 1 1.5837 -5.5554 -1.3705 31 1 3.3137 -2.3883 -1.8366 32 1 3.2702 -4.1170 -2.2584 33 1 5.1821 -3.5365 -2.8401 34 1 6.9077 -3.5549 -2.4037 35 1 5.0005 -1.2021 -2.0239 36 1 6.7260 -1.2204 -1.5874 37 1 7.3204 -1.6423 -3.9579 38 1 5.5947 -1.6239 -4.3937 39 1 6.6141 0.5140 -4.7041 40 1 7.6376 -3.8570 -0.1828 41 1 5.2367 -4.8178 1.5920 42 1 7.0249 -5.1123 1.9348 43 1 7.4217 -2.6083 2.0145 44 1 5.6338 -2.3137 1.6714 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777441036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:00 Heat of formation + Delta-G solvation = -32.559879 kcal Electronic energy + Delta-G solvation = -25591.437480 eV Core-core repulsion = 22088.643477 eV Total energy + Delta-G solvation = -3502.794003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.04566 -37.60788 -37.18045 -35.86844 -34.84442 -33.50894 -31.53537 -30.92625 -29.37312 -26.91624 -25.30329 -24.97621 -22.58788 -22.05999 -21.60686 -20.83935 -19.86175 -18.51846 -17.51700 -17.07866 -16.51930 -16.17252 -15.36180 -15.25201 -14.85968 -14.41834 -14.15216 -13.84055 -13.60901 -13.36794 -13.17152 -13.00876 -12.57192 -12.48772 -12.38143 -11.72214 -11.51265 -11.45531 -11.16219 -11.10056 -11.01040 -10.95226 -10.86515 -10.69918 -10.55557 -10.27785 -10.07502 -10.01697 -9.49561 -9.40006 -9.08589 -8.69384 -8.10826 -7.27285 -7.13911 -6.55838 -4.34081 2.80049 2.96714 3.13759 3.18877 3.19545 3.29906 3.30898 4.02676 4.12282 4.31673 4.75518 4.79847 5.00071 5.09167 5.13939 5.24011 5.26253 5.35805 5.47527 5.48630 5.56478 5.74426 5.80292 5.98483 6.03098 6.04935 6.12488 6.25544 6.29928 6.36971 6.49644 6.53692 6.70513 6.82887 7.10439 7.17911 7.34299 7.48622 7.54916 7.68438 7.80097 7.94679 8.15678 8.15736 8.37719 8.71793 8.84674 8.99911 9.06298 10.34755 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.006762 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.910627 B = 4139.521356 C = 5505.362730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.457 4.457 8 H 0.071 0.929 9 C 0.122 3.878 10 C -0.148 4.148 11 C -0.114 4.114 12 C -0.228 4.228 13 C -0.088 4.088 14 C -0.170 4.170 15 C -0.072 4.072 16 C 0.522 3.478 17 O -0.511 6.511 18 N -0.597 5.597 19 C 0.122 3.878 20 C -0.147 4.147 21 C 0.080 3.920 22 O -0.572 6.572 23 C 0.071 3.929 24 C -0.198 4.198 25 C -0.191 4.191 26 H 0.276 0.724 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.377 0.623 40 H 0.119 0.881 41 H 0.148 0.852 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.851 -2.919 -7.137 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.488 4.488 8 H 0.089 0.911 9 C 0.119 3.881 10 C -0.167 4.167 11 C -0.132 4.132 12 C -0.247 4.247 13 C -0.106 4.106 14 C -0.172 4.172 15 C -0.111 4.111 16 C 0.312 3.688 17 O -0.385 6.385 18 N -0.330 5.330 19 C -0.002 4.002 20 C -0.186 4.186 21 C 0.002 3.998 22 O -0.377 6.377 23 C -0.034 4.034 24 C -0.235 4.235 25 C -0.230 4.230 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.223 0.777 40 H 0.137 0.863 41 H 0.165 0.835 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.321 -2.999 -5.903 13.987 hybrid contribution 0.638 0.933 -0.685 1.322 sum 12.959 -2.066 -6.588 14.683 Atomic orbital electron populations 1.69765 1.07199 1.28417 1.38511 1.25820 0.94837 1.00921 0.92587 0.86299 0.80908 0.81393 0.78416 1.18469 1.19934 1.20045 1.19431 0.94266 0.89967 1.45108 0.91069 1.17400 0.91834 0.91222 0.87604 1.21576 0.97095 0.96119 1.01904 1.20759 0.98254 0.94358 0.99877 1.20369 0.97996 0.98042 1.08336 1.20299 0.95123 0.95401 0.99822 1.19191 0.95653 0.96180 1.06204 1.20380 0.91805 1.02975 0.95987 1.21262 0.82177 0.75659 0.89663 1.90438 1.81772 1.44661 1.21656 1.47436 1.05547 1.70158 1.09861 1.21345 1.01666 0.94031 0.83130 1.22054 1.04528 0.96168 0.95848 1.22074 0.99199 0.81260 0.97287 1.86543 1.93763 1.21477 1.35886 1.21550 0.91313 1.06295 0.84206 1.24087 1.06499 0.94430 0.98516 1.23238 1.03138 0.96022 1.00619 0.91319 0.85494 0.89535 0.89641 0.89770 0.88499 0.90670 0.89864 0.90617 0.89757 0.90875 0.93906 0.93318 0.77677 0.86309 0.83482 0.90134 0.89248 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.42 10.60 55.55 0.59 -20.83 16 2 C 0.07 1.88 5.42 -17.34 -0.09 1.79 16 3 Si 0.90 19.69 29.56 -169.99 -5.03 14.67 16 4 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.46 -12.16 7.93 -37.74 -0.30 -12.46 16 8 H 0.07 1.89 6.96 -52.49 -0.37 1.52 16 9 C 0.12 3.26 5.55 -106.82 -0.59 2.67 16 10 C -0.15 -3.97 8.67 -38.87 -0.34 -4.31 16 11 C -0.11 -2.79 10.02 -39.66 -0.40 -3.19 16 12 C -0.23 -5.31 10.05 -39.29 -0.39 -5.70 16 13 C -0.09 -2.03 9.66 -39.66 -0.38 -2.41 16 14 C -0.17 -4.10 4.44 -103.91 -0.46 -4.56 16 15 C -0.07 -1.41 3.74 -29.03 -0.11 -1.52 16 16 C 0.52 10.19 7.03 -10.99 -0.08 10.11 16 17 O -0.51 -11.74 11.91 5.56 0.07 -11.68 16 18 N -0.60 -9.21 2.84 -166.10 -0.47 -9.68 16 19 C 0.12 1.41 5.19 -4.04 -0.02 1.39 16 20 C -0.15 -1.89 5.86 -26.73 -0.16 -2.05 16 21 C 0.08 0.82 7.05 37.16 0.26 1.08 16 22 O -0.57 -6.82 13.66 -35.23 -0.48 -7.30 16 23 C 0.07 1.01 6.62 -67.93 -0.45 0.56 16 24 C -0.20 -3.09 9.64 -26.73 -0.26 -3.35 16 25 C -0.19 -2.98 9.90 -26.73 -0.26 -3.25 16 26 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 27 H 0.13 3.55 6.13 -52.49 -0.32 3.23 16 28 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.10 1.91 5.85 -51.93 -0.30 1.61 16 32 H 0.08 1.24 7.48 -51.93 -0.39 0.85 16 33 H 0.08 0.88 6.60 -51.93 -0.34 0.54 16 34 H 0.08 0.66 8.03 -51.93 -0.42 0.25 16 35 H 0.08 1.36 6.94 -51.93 -0.36 1.00 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.38 2.54 9.12 45.56 0.42 2.95 16 40 H 0.12 1.31 8.09 -51.93 -0.42 0.89 16 41 H 0.15 2.84 4.97 -53.36 -0.27 2.57 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.10 1.89 7.82 -51.93 -0.41 1.48 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -32.02 357.82 -9.66 -41.68 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.69 Total: 12.94 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -4.03 Total: -25.19 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.12 Total: -30.51 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.42 Total: -18.98 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.02 -9.66 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777441036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.120 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds