Wall clock time and date at job start Tue Mar 31 2020 08:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47222 * 269.99733 * 3 2 1 5 5 H 1.48497 * 109.47388 * 30.00100 * 3 2 1 6 6 H 1.48508 * 109.46930 * 150.00275 * 3 2 1 7 7 C 1.39944 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99825 * 163.70612 * 7 2 1 9 9 C 1.41396 * 120.00011 * 343.71543 * 7 2 1 10 10 C 1.40729 * 120.24172 * 334.18663 * 9 7 2 11 11 C 1.37602 * 119.74081 * 180.32260 * 10 9 7 12 12 C 1.38661 * 120.24825 * 359.66322 * 11 10 9 13 13 C 1.38606 * 120.50178 * 0.02562 * 12 11 10 14 14 C 1.37642 * 120.25066 * 0.02979 * 13 12 11 15 15 C 1.50699 * 120.13065 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47048 * 264.99871 * 15 14 13 17 17 O 1.21282 * 120.00052 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00181 * 179.97438 * 16 15 14 19 19 C 1.46498 * 120.00243 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.47190 * 35.00682 * 19 18 16 21 21 C 1.52995 * 109.47330 * 275.00368 * 19 18 16 22 22 O 1.42903 * 109.47377 * 294.99813 * 21 19 18 23 23 C 1.53006 * 109.46889 * 155.00092 * 19 18 16 24 24 C 1.52996 * 109.47066 * 295.00313 * 23 19 18 25 25 C 1.53009 * 117.49806 * 243.61920 * 24 23 19 26 26 C 1.53000 * 59.99951 * 252.51438 * 25 24 23 27 27 H 0.97006 * 119.99978 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.13100 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.87348 * 179.67756 * 11 10 9 30 30 H 1.08001 * 119.74400 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.87833 * 180.02562 * 13 12 11 32 32 H 1.08999 * 109.47145 * 144.99711 * 15 14 13 33 33 H 1.09002 * 109.47073 * 24.99576 * 15 14 13 34 34 H 0.97003 * 119.99894 * 0.02562 * 18 16 15 35 35 H 1.09007 * 109.47144 * 175.00315 * 21 19 18 36 36 H 1.08999 * 109.47412 * 55.00275 * 21 19 18 37 37 H 0.96698 * 114.00288 * 180.02562 * 22 21 19 38 38 H 1.08995 * 109.47079 * 55.00495 * 23 19 18 39 39 H 1.09006 * 109.46528 * 175.00148 * 23 19 18 40 40 H 1.08993 * 115.55583 * 29.32975 * 24 23 19 41 41 H 1.08999 * 117.49487 * 0.02562 * 25 24 23 42 42 H 1.08996 * 117.49718 * 145.02057 * 25 24 23 43 43 H 1.09004 * 117.49807 * 252.50875 * 26 25 24 44 44 H 1.08996 * 117.51732 * 107.48628 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4402 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0554 -1.2309 -0.2619 9 6 1.3435 -2.4118 0.3444 10 6 0.2101 -2.3804 1.1782 11 6 -0.4246 -3.5549 1.5117 12 6 0.0443 -4.7652 1.0239 13 6 1.1558 -4.8073 0.1969 14 6 1.8072 -3.6451 -0.1490 15 6 3.0157 -3.6940 -1.0479 16 6 4.2662 -3.7193 -0.2074 17 8 4.1842 -3.6991 1.0025 18 7 5.4758 -3.7644 -0.8001 19 6 6.6915 -3.7885 0.0169 20 1 6.5065 -4.3591 0.9270 21 6 7.0876 -2.3570 0.3841 22 8 7.4429 -1.6421 -0.8011 23 6 7.8250 -4.4443 -0.7745 24 6 7.4826 -5.9127 -1.0341 25 6 8.3924 -6.9716 -0.4080 26 6 8.4406 -6.7162 -1.9158 27 1 -0.4850 0.8401 0.0004 28 1 -0.1571 -1.4388 1.5586 29 1 -1.2914 -3.5338 2.1556 30 1 -0.4604 -5.6821 1.2906 31 1 1.5122 -5.7556 -0.1776 32 1 3.0270 -2.8131 -1.6897 33 1 2.9739 -4.5921 -1.6642 34 1 5.5414 -3.7803 -1.7678 35 1 7.9392 -2.3788 1.0642 36 1 6.2474 -1.8607 0.8698 37 1 7.7060 -0.7251 -0.6433 38 1 7.9507 -3.9269 -1.7255 39 1 8.7506 -4.3826 -0.2021 40 1 6.4195 -6.1417 -1.1072 41 1 9.2346 -6.6220 0.1891 42 1 7.9278 -7.8975 -0.0689 43 1 8.0078 -7.4742 -2.5687 44 1 9.3146 -6.1987 -2.3112 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777445366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:19 Heat of formation + Delta-G solvation = -57.761946 kcal Electronic energy + Delta-G solvation = -24890.676915 eV Core-core repulsion = 21386.790068 eV Total energy + Delta-G solvation = -3503.886847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.54486 -38.01360 -37.15921 -36.59051 -34.17126 -33.57146 -31.78695 -30.30734 -29.38525 -26.88879 -26.44984 -24.92215 -22.52872 -21.75002 -20.87888 -20.64137 -20.09613 -19.26723 -17.42813 -17.13223 -16.44590 -15.91416 -15.46162 -15.27264 -14.96308 -14.51352 -14.26094 -14.07289 -13.62361 -13.54560 -13.07855 -12.97797 -12.55088 -12.49066 -12.06873 -11.68772 -11.63285 -11.52897 -11.45446 -11.25146 -11.09822 -10.94863 -10.91132 -10.65390 -10.36039 -10.33182 -10.11563 -9.82722 -9.43345 -9.32617 -9.11676 -9.05160 -8.60224 -7.25787 -7.23486 -6.68982 -4.29019 2.82745 3.02484 3.08474 3.13223 3.30692 3.41557 3.64511 3.76950 3.96867 4.37182 4.45332 4.71005 4.75636 4.82583 5.08699 5.22737 5.41041 5.41801 5.48558 5.54047 5.60398 5.74070 5.75114 5.86856 5.96347 5.97475 6.06607 6.11483 6.22402 6.30161 6.34092 6.50535 6.56177 6.85860 6.93138 7.13721 7.34942 7.47676 7.64582 7.69867 7.96225 8.06050 8.14618 8.18357 8.37022 8.70271 8.95811 8.97427 9.07059 10.25203 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.004679 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.892565 B = 5982.857816 C = 7610.723356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.455 4.455 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.160 4.160 11 C -0.108 4.108 12 C -0.240 4.240 13 C -0.082 4.082 14 C -0.179 4.179 15 C -0.071 4.071 16 C 0.516 3.484 17 O -0.526 6.526 18 N -0.731 5.731 19 C 0.154 3.846 20 H 0.097 0.903 21 C 0.061 3.939 22 O -0.569 6.569 23 C -0.088 4.088 24 C -0.151 4.151 25 C -0.182 4.182 26 C -0.182 4.182 27 H 0.279 0.721 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.398 0.602 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.376 0.624 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.617 -5.317 -3.724 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.181 4.181 15 C -0.111 4.111 16 C 0.303 3.697 17 O -0.400 6.400 18 N -0.385 5.385 19 C 0.048 3.952 20 H 0.115 0.885 21 C -0.018 4.018 22 O -0.374 6.374 23 C -0.126 4.126 24 C -0.169 4.169 25 C -0.219 4.219 26 C -0.219 4.219 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.231 0.769 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.222 0.778 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.192 -5.717 -3.105 15.612 hybrid contribution 0.493 1.321 -0.103 1.414 sum 14.685 -4.395 -3.208 15.661 Atomic orbital electron populations 1.69825 1.07454 1.28963 1.35966 1.25871 0.94673 1.01075 0.92405 0.86411 0.80719 0.81077 0.79090 1.19543 1.20159 1.18699 1.19461 0.97158 0.90958 1.40935 0.90808 1.17330 0.90736 0.91283 0.87988 1.21291 0.99042 0.96633 1.00939 1.20672 0.98685 0.93483 0.99797 1.20296 1.01612 0.96114 1.07880 1.20294 0.95970 0.95524 0.98221 1.19072 0.99301 0.93997 1.05693 1.20261 0.90644 1.02710 0.97482 1.21218 0.84458 0.74590 0.89396 1.90667 1.86894 1.47676 1.14746 1.46104 1.05000 1.77495 1.09899 1.20878 0.84858 0.93626 0.95788 0.88541 1.22694 0.98726 0.93526 0.86880 1.86428 1.89837 1.28236 1.32877 1.21342 0.97368 0.92585 1.01323 1.22390 0.97478 0.92666 1.04402 1.23026 1.02454 1.00735 0.95726 1.22941 1.02078 1.03464 0.93404 0.91039 0.86566 0.89647 0.89736 0.89833 0.88636 0.90760 0.76865 0.93519 0.92471 0.77800 0.90173 0.90959 0.87423 0.88950 0.89032 0.89004 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.79 10.95 55.55 0.61 -20.18 16 2 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 3 Si 0.90 19.02 29.59 -169.99 -5.03 13.99 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.12 8.14 -37.74 -0.31 -12.43 16 8 H 0.07 1.92 6.67 -52.49 -0.35 1.57 16 9 C 0.13 3.49 5.56 -106.83 -0.59 2.90 16 10 C -0.16 -4.33 8.69 -38.87 -0.34 -4.67 16 11 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 12 C -0.24 -5.68 10.05 -39.29 -0.39 -6.08 16 13 C -0.08 -1.92 9.66 -39.66 -0.38 -2.31 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 16 C 0.52 10.07 7.41 -10.99 -0.08 9.99 16 17 O -0.53 -12.49 15.70 5.56 0.09 -12.40 16 18 N -0.73 -10.90 4.45 -53.81 -0.24 -11.14 16 19 C 0.15 2.06 2.35 -67.93 -0.16 1.90 16 20 H 0.10 1.44 7.58 -51.93 -0.39 1.05 16 21 C 0.06 0.80 6.85 37.15 0.25 1.06 16 22 O -0.57 -6.99 12.83 -35.23 -0.45 -7.44 16 23 C -0.09 -0.93 4.75 -26.73 -0.13 -1.05 16 24 C -0.15 -1.55 5.61 -90.62 -0.51 -2.06 16 25 C -0.18 -1.68 10.18 -26.73 -0.27 -1.95 16 26 C -0.18 -1.60 10.25 -26.73 -0.27 -1.88 16 27 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 28 H 0.12 3.23 6.20 -52.49 -0.33 2.91 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.08 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.10 1.90 7.08 -51.93 -0.37 1.54 16 33 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 34 H 0.40 5.08 8.60 -40.82 -0.35 4.73 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.38 3.24 9.12 45.56 0.42 3.65 16 38 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 39 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 40 H 0.11 1.25 7.69 -51.93 -0.40 0.85 16 41 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -31.42 366.94 -9.71 -41.14 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -5.93 Total: 14.70 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -4.28 Total: -24.20 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.37 Total: -31.32 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.36 Total: -19.84 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.42 -9.71 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777445366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.625 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds