Wall clock time and date at job start Tue Mar 31 2020 08:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86805 * 119.99861 * 2 1 4 4 H 1.48499 * 109.47222 * 269.99733 * 3 2 1 5 5 H 1.48497 * 109.47388 * 30.00100 * 3 2 1 6 6 H 1.48508 * 109.46930 * 150.00275 * 3 2 1 7 7 C 1.39944 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99825 * 163.70612 * 7 2 1 9 9 C 1.41396 * 120.00011 * 343.71543 * 7 2 1 10 10 C 1.40729 * 120.24172 * 334.18663 * 9 7 2 11 11 C 1.37602 * 119.74081 * 180.32260 * 10 9 7 12 12 C 1.38661 * 120.24825 * 359.66322 * 11 10 9 13 13 C 1.38606 * 120.50178 * 0.02562 * 12 11 10 14 14 C 1.37642 * 120.25066 * 0.02979 * 13 12 11 15 15 C 1.50699 * 120.13065 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47048 * 264.99871 * 15 14 13 17 17 O 1.21282 * 120.00052 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00181 * 179.97438 * 16 15 14 19 19 C 1.46498 * 120.00243 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.47190 * 35.00682 * 19 18 16 21 21 C 1.52995 * 109.47330 * 275.00368 * 19 18 16 22 22 O 1.42903 * 109.47377 * 294.99813 * 21 19 18 23 23 C 1.53006 * 109.46889 * 155.00092 * 19 18 16 24 24 C 1.52996 * 109.47066 * 295.00313 * 23 19 18 25 25 C 1.53009 * 117.49806 * 243.61920 * 24 23 19 26 26 C 1.53000 * 59.99951 * 252.51438 * 25 24 23 27 27 H 0.97006 * 119.99978 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.13100 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.87348 * 179.67756 * 11 10 9 30 30 H 1.08001 * 119.74400 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.87833 * 180.02562 * 13 12 11 32 32 H 1.08999 * 109.47145 * 144.99711 * 15 14 13 33 33 H 1.09002 * 109.47073 * 24.99576 * 15 14 13 34 34 H 0.97003 * 119.99894 * 0.02562 * 18 16 15 35 35 H 1.09007 * 109.47144 * 175.00315 * 21 19 18 36 36 H 1.08999 * 109.47412 * 55.00275 * 21 19 18 37 37 H 0.96698 * 114.00288 * 180.02562 * 22 21 19 38 38 H 1.08995 * 109.47079 * 55.00495 * 23 19 18 39 39 H 1.09006 * 109.46528 * 175.00148 * 23 19 18 40 40 H 1.08993 * 115.55583 * 29.32975 * 24 23 19 41 41 H 1.08999 * 117.49487 * 0.02562 * 25 24 23 42 42 H 1.08996 * 117.49718 * 145.02057 * 25 24 23 43 43 H 1.09004 * 117.49807 * 252.50875 * 26 25 24 44 44 H 1.08996 * 117.51732 * 107.48628 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4402 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0554 -1.2309 -0.2619 9 6 1.3435 -2.4118 0.3444 10 6 0.2101 -2.3804 1.1782 11 6 -0.4246 -3.5549 1.5117 12 6 0.0443 -4.7652 1.0239 13 6 1.1558 -4.8073 0.1969 14 6 1.8072 -3.6451 -0.1490 15 6 3.0157 -3.6940 -1.0479 16 6 4.2662 -3.7193 -0.2074 17 8 4.1842 -3.6991 1.0025 18 7 5.4758 -3.7644 -0.8001 19 6 6.6915 -3.7885 0.0169 20 1 6.5065 -4.3591 0.9270 21 6 7.0876 -2.3570 0.3841 22 8 7.4429 -1.6421 -0.8011 23 6 7.8250 -4.4443 -0.7745 24 6 7.4826 -5.9127 -1.0341 25 6 8.3924 -6.9716 -0.4080 26 6 8.4406 -6.7162 -1.9158 27 1 -0.4850 0.8401 0.0004 28 1 -0.1571 -1.4388 1.5586 29 1 -1.2914 -3.5338 2.1556 30 1 -0.4604 -5.6821 1.2906 31 1 1.5122 -5.7556 -0.1776 32 1 3.0270 -2.8131 -1.6897 33 1 2.9739 -4.5921 -1.6642 34 1 5.5414 -3.7803 -1.7678 35 1 7.9392 -2.3788 1.0642 36 1 6.2474 -1.8607 0.8698 37 1 7.7060 -0.7251 -0.6433 38 1 7.9507 -3.9269 -1.7255 39 1 8.7506 -4.3826 -0.2021 40 1 6.4195 -6.1417 -1.1072 41 1 9.2346 -6.6220 0.1891 42 1 7.9278 -7.8975 -0.0689 43 1 8.0078 -7.4742 -2.5687 44 1 9.3146 -6.1987 -2.3112 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777445366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:18 Heat of formation + Delta-G solvation = -77.761612 kcal Electronic energy + Delta-G solvation = -24891.544166 eV Core-core repulsion = 21386.790068 eV Total energy + Delta-G solvation = -3504.754098 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.96293 -39.43715 -38.54849 -37.59101 -35.49679 -35.39242 -33.50051 -31.61712 -31.28293 -28.39377 -27.62230 -26.81786 -23.23152 -23.04060 -22.78845 -21.77892 -21.23645 -20.93356 -19.06356 -18.49325 -17.76816 -17.30488 -17.13302 -16.33296 -16.23505 -16.15666 -15.53910 -15.49906 -15.16648 -14.77039 -14.48141 -14.42819 -14.35347 -13.67445 -13.38192 -13.27519 -13.10535 -12.88755 -12.74412 -12.62835 -12.49347 -12.44733 -12.29419 -12.12984 -12.07645 -11.31745 -11.20783 -11.14932 -11.04252 -11.01555 -10.68408 -10.63477 -9.92414 -9.21714 -9.14971 -8.58824 -6.28356 1.00375 1.14278 1.34618 1.46314 1.53294 1.88348 2.19915 2.41166 2.79419 2.95106 3.40989 3.59530 3.78266 3.94955 4.10037 4.17057 4.19097 4.33719 4.41117 4.42909 4.46687 4.54008 4.62477 4.66092 4.72364 4.80060 4.82102 4.83796 4.97954 5.07570 5.10345 5.19489 5.20933 5.30993 5.37746 5.42793 5.55776 5.68269 5.78548 6.04853 6.17929 6.22167 6.43267 6.71141 6.78074 6.83649 7.00465 7.12332 7.50345 8.37646 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.004679 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.892565 B = 5982.857816 C = 7610.723356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.481 4.481 8 H 0.069 0.931 9 C 0.096 3.904 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.242 4.242 13 C -0.092 4.092 14 C -0.186 4.186 15 C -0.070 4.070 16 C 0.519 3.481 17 O -0.575 6.575 18 N -0.711 5.711 19 C 0.150 3.850 20 H 0.079 0.921 21 C 0.066 3.934 22 O -0.574 6.574 23 C -0.073 4.073 24 C -0.167 4.167 25 C -0.184 4.184 26 C -0.170 4.170 27 H 0.285 0.715 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.410 0.590 35 H 0.074 0.926 36 H 0.018 0.982 37 H 0.393 0.607 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.735 -5.984 -4.960 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.511 4.511 8 H 0.087 0.913 9 C 0.094 3.906 10 C -0.213 4.213 11 C -0.136 4.136 12 C -0.261 4.261 13 C -0.110 4.110 14 C -0.188 4.188 15 C -0.110 4.110 16 C 0.307 3.693 17 O -0.454 6.454 18 N -0.364 5.364 19 C 0.045 3.955 20 H 0.097 0.903 21 C -0.013 4.013 22 O -0.382 6.382 23 C -0.110 4.110 24 C -0.185 4.185 25 C -0.221 4.221 26 C -0.207 4.207 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.247 0.753 35 H 0.093 0.907 36 H 0.036 0.964 37 H 0.242 0.758 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.337 -6.388 -4.387 18.082 hybrid contribution -0.161 1.422 0.268 1.456 sum 16.176 -4.965 -4.119 17.415 Atomic orbital electron populations 1.69886 1.08809 1.30175 1.36486 1.26669 0.95424 1.04182 0.91571 0.85367 0.78951 0.76709 0.79685 1.18019 1.19247 1.19147 1.19588 0.97021 0.91983 1.42514 0.91298 1.17723 0.91331 0.92789 0.88737 1.21302 1.00558 0.96800 1.02679 1.20949 0.99232 0.93382 1.00060 1.20709 1.01595 0.96739 1.07094 1.20726 0.95753 0.96598 0.97931 1.19553 1.00381 0.93483 1.05389 1.20268 0.89445 1.04264 0.97015 1.21044 0.85534 0.74199 0.88528 1.90649 1.87646 1.50428 1.16676 1.45900 1.04356 1.75440 1.10695 1.21028 0.84916 0.94115 0.95454 0.90309 1.22543 0.98374 0.92895 0.87453 1.86379 1.89762 1.29637 1.32410 1.21220 0.96435 0.92373 1.00993 1.22306 0.97018 0.92801 1.06372 1.23112 1.02302 1.00250 0.96397 1.23010 1.01639 1.02825 0.93189 0.90397 0.88527 0.87689 0.86711 0.86663 0.88911 0.87245 0.75346 0.90749 0.96373 0.75843 0.89922 0.89329 0.89039 0.87990 0.89133 0.88482 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.54 10.95 21.83 0.24 -44.30 16 2 C 0.04 1.86 5.16 85.26 0.44 2.30 16 3 Si 0.97 39.60 29.59 68.60 2.03 41.63 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.48 -26.51 8.14 23.46 0.19 -26.32 16 8 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 9 C 0.10 5.39 5.56 -21.29 -0.12 5.28 16 10 C -0.19 -10.94 8.69 22.73 0.20 -10.74 16 11 C -0.12 -5.93 10.02 22.22 0.22 -5.70 16 12 C -0.24 -11.26 10.05 22.46 0.23 -11.03 16 13 C -0.09 -4.23 9.66 22.22 0.21 -4.02 16 14 C -0.19 -9.17 4.43 -19.40 -0.09 -9.26 16 15 C -0.07 -2.78 5.18 29.10 0.15 -2.63 16 16 C 0.52 20.31 7.41 87.66 0.65 20.96 16 17 O -0.58 -28.06 15.70 -3.04 -0.05 -28.11 16 18 N -0.71 -20.65 4.45 -442.54 -1.97 -22.63 16 19 C 0.15 3.86 2.35 44.99 0.11 3.97 16 20 H 0.08 2.35 7.58 -2.39 -0.02 2.34 16 21 C 0.07 1.69 6.85 71.98 0.49 2.19 16 22 O -0.57 -13.02 12.83 -148.98 -1.91 -14.93 16 23 C -0.07 -1.36 4.75 30.59 0.15 -1.21 16 24 C -0.17 -3.09 5.61 -10.79 -0.06 -3.15 16 25 C -0.18 -2.98 10.18 30.60 0.31 -2.66 16 26 C -0.17 -2.52 10.25 30.60 0.31 -2.21 16 27 H 0.29 13.95 8.30 -92.70 -0.77 13.18 16 28 H 0.10 5.69 6.20 -2.91 -0.02 5.67 16 29 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 30 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.09 3.71 7.08 -2.39 -0.02 3.69 16 33 H 0.11 3.46 8.05 -2.39 -0.02 3.44 16 34 H 0.41 9.84 8.60 -92.71 -0.80 9.04 16 35 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.39 5.97 9.12 -74.06 -0.68 5.30 16 38 H 0.08 1.54 7.73 -2.39 -0.02 1.52 16 39 H 0.09 1.41 7.88 -2.38 -0.02 1.39 16 40 H 0.09 2.00 7.69 -2.39 -0.02 1.99 16 41 H 0.10 1.45 8.03 -2.39 -0.02 1.43 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -70.44 366.94 1.28 -69.16 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: -0.46 Total: 43.42 kcal Atomic # 6 Polarization: -47.64 SS G_CDS: 3.40 Total: -44.25 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -1.73 Total: -66.92 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -1.96 Total: -43.04 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -70.44 1.28 -69.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777445366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.601 kcal (2) G-P(sol) polarization free energy of solvation -70.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds