Wall clock time and date at job start Tue Mar 31 2020 08:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48496 * 109.47262 * 240.00550 * 3 2 1 5 5 H 1.48504 * 109.47090 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46694 * 120.00184 * 3 2 1 7 7 C 1.39940 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 163.62881 * 7 2 1 9 9 C 1.41397 * 120.00210 * 343.62218 * 7 2 1 10 10 C 1.40731 * 120.24365 * 334.06231 * 9 7 2 11 11 C 1.37598 * 119.74751 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24462 * 359.71775 * 11 10 9 13 13 C 1.38611 * 120.49834 * 0.56532 * 12 11 10 14 14 C 1.37637 * 120.25133 * 359.43795 * 13 12 11 15 15 C 1.50701 * 120.12547 * 180.30203 * 14 13 12 16 16 C 1.50707 * 109.46977 * 264.99579 * 15 14 13 17 17 O 1.21283 * 120.00055 * 0.02562 * 16 15 14 18 18 N 1.34768 * 119.99792 * 180.02562 * 16 15 14 19 19 C 1.46503 * 119.99956 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.46738 * 324.99768 * 19 18 16 21 21 C 1.52998 * 109.47460 * 84.99909 * 19 18 16 22 22 O 1.42897 * 109.46994 * 65.00064 * 21 19 18 23 23 C 1.53004 * 109.47078 * 205.00303 * 19 18 16 24 24 C 1.52991 * 109.47651 * 64.99761 * 23 19 18 25 25 C 1.53000 * 117.49922 * 243.62360 * 24 23 19 26 26 C 1.52994 * 59.99884 * 252.50396 * 25 24 23 27 27 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.12473 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87750 * 179.97438 * 11 10 9 30 30 H 1.07996 * 119.74501 * 180.29935 * 12 11 10 31 31 H 1.08001 * 119.87277 * 179.71745 * 13 12 11 32 32 H 1.08998 * 109.47703 * 24.99882 * 15 14 13 33 33 H 1.09003 * 109.46856 * 145.00473 * 15 14 13 34 34 H 0.97001 * 120.00588 * 359.97438 * 18 16 15 35 35 H 1.08998 * 109.47570 * 185.00083 * 21 19 18 36 36 H 1.09006 * 109.47031 * 305.00343 * 21 19 18 37 37 H 0.96705 * 114.00082 * 179.97438 * 22 21 19 38 38 H 1.09006 * 109.46830 * 185.00139 * 23 19 18 39 39 H 1.09004 * 109.47039 * 304.98969 * 23 19 18 40 40 H 1.09009 * 115.54802 * 29.32532 * 24 23 19 41 41 H 1.08994 * 117.49967 * 0.02562 * 25 24 23 42 42 H 1.09008 * 117.49713 * 145.01559 * 25 24 23 43 43 H 1.08998 * 117.50500 * 252.50858 * 26 25 24 44 44 H 1.09001 * 117.51637 * 107.47703 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0958 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0551 -1.2308 -0.2642 9 6 1.3440 -2.4118 0.3442 10 6 0.2134 -2.3809 1.1816 11 6 -0.4246 -3.5547 1.5110 12 6 0.0392 -4.7643 1.0164 13 6 1.1552 -4.8071 0.1955 14 6 1.8091 -3.6454 -0.1470 15 6 3.0182 -3.6946 -1.0452 16 6 4.2681 -3.7244 -0.2038 17 8 4.1852 -3.7077 1.0061 18 7 5.4780 -3.7694 -0.7958 19 6 6.6931 -3.7989 0.0221 20 1 6.5436 -3.1943 0.9167 21 6 7.0004 -5.2419 0.4273 22 8 7.3106 -6.0081 -0.7383 23 6 7.8646 -3.2351 -0.7845 24 6 7.6134 -1.7558 -1.0829 25 6 7.4574 -1.3474 -2.5491 26 6 8.7288 -0.9769 -1.7829 27 1 -0.4851 0.8400 0.0004 28 1 -0.1517 -1.4395 1.5650 29 1 -1.2921 -3.5335 2.1538 30 1 -0.4706 -5.6802 1.2761 31 1 1.5104 -5.7552 -0.1805 32 1 2.9752 -4.5911 -1.6638 33 1 3.0318 -2.8121 -1.6848 34 1 5.5444 -3.7831 -1.7634 35 1 7.8517 -5.2549 1.1078 36 1 6.1311 -5.6727 0.9244 37 1 7.5168 -6.9352 -0.5563 38 1 8.7849 -3.3387 -0.2094 39 1 7.9582 -3.7841 -1.7215 40 1 7.0138 -1.2226 -0.3451 41 1 7.5333 -2.1328 -3.3011 42 1 6.7549 -0.5455 -2.7762 43 1 8.8629 0.0688 -1.5059 44 1 9.6418 -1.5184 -2.0305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777445367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:23 Heat of formation + Delta-G solvation = -58.174214 kcal Electronic energy + Delta-G solvation = -25028.203964 eV Core-core repulsion = 21524.299239 eV Total energy + Delta-G solvation = -3503.904724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.53359 -37.98773 -37.11989 -36.64166 -34.14420 -33.56714 -31.78564 -30.33620 -29.38282 -26.87812 -26.45051 -24.91570 -22.42408 -21.75020 -20.87043 -20.54725 -20.17812 -19.21351 -17.48221 -17.12176 -16.45212 -16.06267 -15.37071 -15.13010 -14.87187 -14.54442 -14.34587 -14.08103 -13.62046 -13.37449 -13.03764 -12.99595 -12.72456 -12.52605 -12.13257 -11.65147 -11.55964 -11.51664 -11.29636 -11.18298 -11.09940 -10.93638 -10.91809 -10.63898 -10.36353 -10.30311 -9.99501 -9.95056 -9.42850 -9.31820 -9.11516 -9.03706 -8.58556 -7.25504 -7.23130 -6.68662 -4.28693 2.84456 3.03367 3.08331 3.11645 3.31965 3.42900 3.71595 3.81215 3.97044 4.28993 4.50118 4.71283 4.83156 4.93140 5.10913 5.24486 5.36797 5.46113 5.51590 5.58960 5.63518 5.78307 5.82877 5.88216 5.96235 6.01497 6.09439 6.13381 6.25197 6.34265 6.36467 6.51162 6.56526 6.86213 6.94516 7.14109 7.35214 7.48043 7.54225 7.70126 7.96893 8.07332 8.15199 8.18712 8.37418 8.70454 8.96787 8.98176 9.07431 10.25696 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.005498 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.370573 B = 5091.473258 C = 7101.989794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.160 4.160 11 C -0.108 4.108 12 C -0.240 4.240 13 C -0.082 4.082 14 C -0.178 4.178 15 C -0.071 4.071 16 C 0.516 3.484 17 O -0.527 6.527 18 N -0.728 5.728 19 C 0.153 3.847 20 H 0.098 0.902 21 C 0.063 3.937 22 O -0.569 6.569 23 C -0.088 4.088 24 C -0.150 4.150 25 C -0.178 4.178 26 C -0.184 4.184 27 H 0.279 0.721 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.397 0.603 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.374 0.626 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.462 -4.631 -4.129 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.100 4.100 14 C -0.180 4.180 15 C -0.111 4.111 16 C 0.304 3.696 17 O -0.402 6.402 18 N -0.382 5.382 19 C 0.047 3.953 20 H 0.115 0.885 21 C -0.016 4.016 22 O -0.374 6.374 23 C -0.126 4.126 24 C -0.168 4.168 25 C -0.215 4.215 26 C -0.221 4.221 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.231 0.769 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.220 0.780 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.067 -3.857 -3.534 15.009 hybrid contribution 0.453 0.265 -0.098 0.534 sum 14.520 -3.592 -3.632 15.393 Atomic orbital electron populations 1.69813 1.07437 1.29071 1.35884 1.25862 0.94672 1.01036 0.92413 0.86476 0.80255 0.80726 0.79902 1.19098 1.20376 1.18945 1.19434 0.97175 0.90941 1.40992 0.90808 1.17324 0.90742 0.91269 0.87976 1.21282 0.99092 0.96609 1.00897 1.20668 0.98686 0.93496 0.99789 1.20294 1.01502 0.96138 1.07993 1.20293 0.95911 0.95536 0.98286 1.19068 0.99260 0.93976 1.05700 1.20260 0.90665 1.02699 0.97470 1.21204 0.84477 0.74540 0.89382 1.90664 1.86864 1.47913 1.14750 1.46044 1.04927 1.77332 1.09855 1.20927 0.85010 0.93620 0.95743 0.88459 1.22699 0.98988 0.92767 0.87183 1.86457 1.92304 1.25261 1.33364 1.21336 0.97199 0.92851 1.01176 1.22345 1.02428 0.95983 0.96091 1.23017 1.00164 1.03717 0.94575 1.22937 0.93133 1.00714 1.05352 0.90977 0.86605 0.89655 0.89752 0.89858 0.90759 0.88673 0.76900 0.93363 0.92842 0.77963 0.90718 0.90512 0.87626 0.88855 0.88810 0.89097 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.81 10.97 55.55 0.61 -20.20 16 2 C 0.08 1.96 5.16 -17.34 -0.09 1.88 16 3 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.46 -12.11 8.14 -37.74 -0.31 -12.42 16 8 H 0.07 1.91 6.68 -52.48 -0.35 1.56 16 9 C 0.13 3.50 5.56 -106.83 -0.59 2.91 16 10 C -0.16 -4.33 8.68 -38.87 -0.34 -4.67 16 11 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 12 C -0.24 -5.70 10.05 -39.29 -0.39 -6.09 16 13 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 14 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 15 C -0.07 -1.43 5.18 -29.03 -0.15 -1.58 16 16 C 0.52 10.10 7.43 -10.99 -0.08 10.02 16 17 O -0.53 -12.52 15.70 5.55 0.09 -12.43 16 18 N -0.73 -10.90 4.75 -53.80 -0.26 -11.15 16 19 C 0.15 2.03 2.33 -67.93 -0.16 1.87 16 20 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16 21 C 0.06 0.75 6.85 37.16 0.25 1.00 16 22 O -0.57 -6.12 12.83 -35.23 -0.45 -6.58 16 23 C -0.09 -0.95 4.75 -26.73 -0.13 -1.08 16 24 C -0.15 -1.73 5.47 -90.63 -0.50 -2.23 16 25 C -0.18 -1.92 10.18 -26.73 -0.27 -2.19 16 26 C -0.18 -1.84 10.25 -26.74 -0.27 -2.11 16 27 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 28 H 0.12 3.23 6.22 -52.49 -0.33 2.90 16 29 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 30 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.10 1.89 7.06 -51.93 -0.37 1.52 16 34 H 0.40 5.17 8.60 -40.82 -0.35 4.82 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.37 2.50 9.12 45.56 0.42 2.91 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.83 7.46 -51.93 -0.39 0.44 16 40 H 0.11 1.42 8.08 -51.92 -0.42 1.00 16 41 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 42 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -31.37 367.49 -9.73 -41.10 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -5.95 Total: 14.56 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -4.27 Total: -24.90 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.35 Total: -31.35 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.36 Total: -19.01 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.37 -9.73 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777445367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.077 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds