Wall clock time and date at job start Tue Mar 31 2020 08:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47194 * 85.19118 * 3 2 1 5 5 H 1.48505 * 109.46937 * 205.18934 * 3 2 1 6 6 H 1.48498 * 109.47234 * 325.19077 * 3 2 1 7 7 C 1.39942 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00077 * 196.30937 * 7 2 1 9 9 C 1.41400 * 120.00205 * 16.29869 * 7 2 1 10 10 C 1.40732 * 120.23872 * 26.16263 * 9 7 2 11 11 C 1.37600 * 119.74097 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24898 * 0.02562 * 11 10 9 13 13 C 1.38606 * 120.50471 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24649 * 359.65965 * 13 12 11 15 15 C 1.50703 * 120.13007 * 180.32491 * 14 13 12 16 16 C 1.50692 * 109.47000 * 265.30719 * 15 14 13 17 17 O 1.21283 * 120.00716 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99931 * 180.02562 * 16 15 14 19 19 O 1.41597 * 120.00111 * 180.02562 * 18 16 15 20 20 C 1.42900 * 114.00257 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47111 * 275.00037 * 20 19 18 22 22 C 1.53002 * 109.47005 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.47315 * 59.99916 * 22 21 20 24 24 C 1.53007 * 109.47093 * 300.00252 * 23 22 21 25 25 C 1.52994 * 109.47064 * 59.99631 * 24 23 22 26 26 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.13238 * 359.97135 * 10 9 7 28 28 H 1.07998 * 119.87209 * 179.97438 * 11 10 9 29 29 H 1.08002 * 119.74769 * 179.97438 * 12 11 10 30 30 H 1.07994 * 119.87846 * 179.97438 * 13 12 11 31 31 H 1.09000 * 109.46646 * 25.30567 * 15 14 13 32 32 H 1.08997 * 109.47028 * 145.30773 * 15 14 13 33 33 H 0.97002 * 119.99800 * 359.97438 * 18 16 15 34 34 H 1.09001 * 109.47160 * 34.99512 * 20 19 18 35 35 H 1.08999 * 109.47132 * 299.99511 * 21 20 19 36 36 H 1.09000 * 109.47347 * 59.99928 * 21 20 19 37 37 H 1.08999 * 109.47068 * 299.99908 * 22 21 20 38 38 H 1.08996 * 109.47505 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47379 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47076 * 59.99442 * 23 22 21 41 41 H 1.09001 * 109.46498 * 299.99543 * 24 23 22 42 42 H 1.08999 * 109.46892 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.46934 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.47535 * 60.00547 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3881 2.1051 1.3951 5 1 3.5870 1.4129 -0.5959 6 1 1.4942 2.6212 -0.7992 7 6 2.0079 -1.2119 -0.0005 8 1 3.0553 -1.2309 0.2621 9 6 1.3436 -2.4118 -0.3447 10 6 0.2148 -2.3810 -1.1847 11 6 -0.4242 -3.5547 -1.5126 12 6 0.0398 -4.7643 -1.0184 13 6 1.1500 -4.8063 -0.1896 14 6 1.8087 -3.6454 0.1464 15 6 3.0198 -3.6949 1.0419 16 6 2.6000 -3.4515 2.4685 17 8 1.4323 -3.2565 2.7323 18 7 3.5222 -3.4495 3.4514 19 8 3.1276 -3.2213 4.7920 20 6 4.2070 -3.2474 5.7281 21 6 4.4796 -4.6920 6.1520 22 6 5.6357 -4.7199 7.1538 23 6 5.2651 -3.8888 8.3837 24 6 4.9924 -2.4441 7.9598 25 6 3.8364 -2.4162 6.9580 26 1 -0.4850 0.8401 0.0004 27 1 -0.1491 -1.4399 -1.5696 28 1 -1.2908 -3.5336 -2.1567 29 1 -0.4681 -5.6806 -1.2807 30 1 1.5024 -5.7540 0.1899 31 1 3.4896 -4.6754 0.9637 32 1 3.7296 -2.9264 0.7359 33 1 4.4561 -3.6051 3.2405 34 1 5.1007 -2.8302 5.2639 35 1 3.5860 -5.1092 6.6163 36 1 4.7441 -5.2840 5.2759 37 1 6.5292 -4.3029 6.6892 38 1 5.8297 -5.7490 7.4562 39 1 6.0889 -3.9083 9.0972 40 1 4.3716 -4.3058 8.8483 41 1 5.8860 -2.0271 7.4952 42 1 4.7280 -1.8521 8.8360 43 1 3.6424 -1.3871 6.6557 44 1 2.9428 -2.8332 7.4226 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777963074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:36 Heat of formation + Delta-G solvation = -37.113860 kcal Electronic energy + Delta-G solvation = -24579.728983 eV Core-core repulsion = 21076.737504 eV Total energy + Delta-G solvation = -3502.991479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.34194 -38.59055 -37.22158 -35.89523 -33.55923 -32.20984 -31.30494 -31.00629 -29.45252 -29.22081 -26.53742 -24.90689 -22.87911 -22.51090 -20.98319 -20.81564 -20.07362 -19.21345 -17.87098 -17.10164 -16.30832 -15.63669 -15.40882 -15.02256 -14.54669 -14.52918 -14.40391 -14.10611 -13.67368 -13.44078 -13.15856 -12.98965 -12.76989 -12.54840 -12.46826 -11.78563 -11.76306 -11.47992 -11.38503 -11.28327 -11.09387 -11.05373 -10.88555 -10.85451 -10.67296 -10.62183 -10.37450 -10.18461 -9.45625 -9.32427 -9.09922 -9.08288 -8.36567 -7.29867 -7.26302 -6.66395 -4.27960 2.26934 2.86647 3.09717 3.10896 3.13103 3.30737 3.50008 3.97996 4.38436 4.45865 4.48378 4.72503 4.83700 4.92453 4.95379 5.14920 5.20288 5.22857 5.34690 5.45098 5.57046 5.74893 5.77145 5.79937 5.85035 5.90917 5.94694 5.95330 6.06359 6.10082 6.15458 6.31068 6.35894 6.55942 6.79234 7.15510 7.30666 7.32539 7.45736 7.67121 7.86900 7.97110 8.07587 8.16768 8.35947 8.68599 8.95017 9.04824 9.05510 10.28558 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.003899 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.596661 B = 7180.082057 C = 8580.634732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.075 0.925 9 C 0.132 3.868 10 C -0.162 4.162 11 C -0.103 4.103 12 C -0.243 4.243 13 C -0.077 4.077 14 C -0.187 4.187 15 C -0.053 4.053 16 C 0.523 3.477 17 O -0.493 6.493 18 N -0.612 5.612 19 O -0.145 6.145 20 C 0.064 3.936 21 C -0.143 4.143 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.114 4.114 25 C -0.113 4.113 26 H 0.279 0.721 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.397 0.603 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.842 -4.797 11.318 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.184 1.184 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.093 0.907 9 C 0.130 3.870 10 C -0.181 4.181 11 C -0.122 4.122 12 C -0.262 4.262 13 C -0.095 4.095 14 C -0.189 4.189 15 C -0.093 4.093 16 C 0.310 3.690 17 O -0.362 6.362 18 N -0.319 5.319 19 O -0.148 6.148 20 C 0.005 3.995 21 C -0.181 4.181 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.152 4.152 25 C -0.152 4.152 26 H 0.090 0.910 27 H 0.135 0.865 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.519 -4.445 11.575 16.925 hybrid contribution 0.914 0.706 0.265 1.185 sum 12.433 -3.739 11.841 17.572 Atomic orbital electron populations 1.69838 1.07518 1.28947 1.34943 1.25844 0.94671 1.01054 0.92368 0.86406 0.80732 0.81247 0.78973 1.19708 1.18450 1.20032 1.19461 0.97179 0.91126 1.41205 0.90675 1.17328 0.90723 0.91201 0.87785 1.21282 0.99294 0.96634 1.00913 1.20686 0.98374 0.93464 0.99677 1.20293 1.01496 0.96227 1.08175 1.20296 0.95763 0.95668 0.97784 1.18898 1.00851 0.94176 1.04985 1.20182 0.99182 1.02050 0.87889 1.21494 0.85772 0.76360 0.85354 1.90733 1.17975 1.45276 1.82230 1.48137 1.10327 1.78130 0.95287 1.90622 1.26176 1.93967 1.04055 1.22525 0.91158 0.95663 0.90132 1.22103 0.99430 0.96901 0.99647 1.21501 0.97898 1.00229 0.95801 1.21593 1.01577 0.95375 0.97523 1.21500 0.98106 0.96933 0.98655 1.21539 0.99309 1.00413 0.93901 0.91009 0.86537 0.89563 0.89623 0.89648 0.90323 0.88644 0.76392 0.91139 0.90941 0.91553 0.91911 0.91662 0.91866 0.91720 0.91750 0.91230 0.90762 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.37 10.98 55.55 0.61 -20.76 16 2 C 0.08 2.04 5.16 -17.34 -0.09 1.95 16 3 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.46 -12.18 8.46 -37.74 -0.32 -12.50 16 8 H 0.08 1.85 6.36 -52.48 -0.33 1.52 16 9 C 0.13 3.56 5.56 -106.82 -0.59 2.96 16 10 C -0.16 -4.36 8.68 -38.87 -0.34 -4.70 16 11 C -0.10 -2.55 10.02 -39.66 -0.40 -2.95 16 12 C -0.24 -5.70 10.05 -39.29 -0.39 -6.10 16 13 C -0.08 -1.79 9.66 -39.66 -0.38 -2.17 16 14 C -0.19 -4.53 4.43 -103.91 -0.46 -4.99 16 15 C -0.05 -1.03 5.35 -29.04 -0.16 -1.18 16 16 C 0.52 11.17 7.97 -10.99 -0.09 11.08 16 17 O -0.49 -13.47 16.44 -12.64 -0.21 -13.68 16 18 N -0.61 -10.27 6.37 31.22 0.20 -10.08 16 19 O -0.15 -2.53 10.75 -29.66 -0.32 -2.85 16 20 C 0.06 0.77 2.74 -26.73 -0.07 0.69 16 21 C -0.14 -1.46 5.57 -26.73 -0.15 -1.61 16 22 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 23 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 24 C -0.11 -0.92 5.92 -26.73 -0.16 -1.08 16 25 C -0.11 -1.22 5.57 -26.73 -0.15 -1.37 16 26 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 27 H 0.12 3.21 6.23 -52.49 -0.33 2.89 16 28 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 32 H 0.10 1.73 6.48 -51.93 -0.34 1.39 16 33 H 0.40 4.85 8.43 -40.82 -0.34 4.51 16 34 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -33.47 359.85 -10.19 -43.66 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.80 Total: 8.29 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -4.07 Total: -24.09 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.81 Total: -30.83 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.53 Total: -16.53 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.47 -10.19 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777963074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.549 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds