Wall clock time and date at job start Tue Mar 31 2020 07:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00192 * 2 1 4 4 H 1.48501 * 109.46841 * 270.00027 * 3 2 1 5 5 H 1.48497 * 109.46938 * 30.00128 * 3 2 1 6 6 H 1.48501 * 109.46743 * 150.00325 * 3 2 1 7 7 C 1.39946 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99892 * 182.44943 * 7 2 1 9 9 C 1.41400 * 119.99848 * 2.44894 * 7 2 1 10 10 C 1.40733 * 120.24414 * 325.95061 * 9 7 2 11 11 C 1.37599 * 119.74143 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25122 * 359.72279 * 11 10 9 13 13 C 1.38618 * 120.50136 * 0.55817 * 12 11 10 14 14 C 1.37638 * 120.24486 * 359.44348 * 13 12 11 15 15 C 1.50698 * 120.12540 * 180.29929 * 14 13 12 16 16 C 1.50704 * 109.46930 * 264.99469 * 15 14 13 17 17 O 1.21284 * 120.00244 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00248 * 179.97438 * 16 15 14 19 19 C 1.47427 * 125.64520 * 354.52317 * 18 16 15 20 20 C 1.54692 * 104.94003 * 204.07506 * 19 18 16 21 21 C 1.55160 * 101.67457 * 323.27141 * 20 19 18 22 22 C 1.47016 * 125.65221 * 174.82807 * 18 16 15 23 23 H 1.09005 * 109.88257 * 59.48316 * 22 18 16 24 24 C 1.52996 * 109.88162 * 298.47775 * 22 18 16 25 25 C 1.53004 * 109.47398 * 173.86820 * 24 22 18 26 26 O 1.42897 * 109.47393 * 185.12142 * 25 24 22 27 27 H 0.97001 * 119.99650 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.12960 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.86948 * 179.97438 * 11 10 9 30 30 H 1.07994 * 119.75132 * 180.29725 * 12 11 10 31 31 H 1.07999 * 119.87476 * 179.71248 * 13 12 11 32 32 H 1.08996 * 109.47516 * 24.99699 * 15 14 13 33 33 H 1.09002 * 109.47267 * 145.00517 * 15 14 13 34 34 H 1.09004 * 110.36886 * 323.00074 * 19 18 16 35 35 H 1.08998 * 110.36993 * 85.32310 * 19 18 16 36 36 H 1.09006 * 111.09804 * 205.11101 * 20 19 18 37 37 H 1.08997 * 110.85514 * 81.33385 * 20 19 18 38 38 H 1.08999 * 110.72242 * 276.97658 * 21 20 19 39 39 H 1.08999 * 110.86759 * 153.77192 * 21 20 19 40 40 H 1.08998 * 109.47327 * 293.86776 * 24 22 18 41 41 H 1.08997 * 109.47439 * 53.86895 * 24 22 18 42 42 H 1.08998 * 109.46808 * 305.12602 * 25 24 22 43 43 H 1.08998 * 109.46807 * 65.12031 * 25 24 22 44 44 H 0.96705 * 113.99728 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4400 0.7000 7 6 2.0079 -1.2120 -0.0005 8 1 3.0872 -1.2124 0.0394 9 6 1.3019 -2.4359 -0.0534 10 6 0.0507 -2.5604 0.5789 11 6 -0.6272 -3.7564 0.5213 12 6 -0.0848 -4.8346 -0.1611 13 6 1.1493 -4.7252 -0.7827 14 6 1.8452 -3.5385 -0.7381 15 6 3.1836 -3.4205 -1.4205 16 6 4.2814 -3.6849 -0.4224 17 8 4.0042 -3.9442 0.7295 18 7 5.5712 -3.6343 -0.8100 19 6 6.0460 -3.4459 -2.1930 20 6 7.4652 -4.0610 -2.2148 21 6 7.9980 -3.6710 -0.8107 22 6 6.7378 -3.7641 0.0753 23 1 6.7121 -4.7282 0.5833 24 6 6.7374 -2.6331 1.1056 25 6 7.8649 -2.8618 2.1143 26 8 7.7910 -1.8732 3.1435 27 1 -0.4850 0.8401 0.0004 28 1 -0.3756 -1.7205 1.1072 29 1 -1.5873 -3.8543 1.0062 30 1 -0.6261 -5.7681 -0.2052 31 1 1.5644 -5.5729 -1.3075 32 1 3.2447 -4.1487 -2.2292 33 1 3.2968 -2.4155 -1.8271 34 1 5.3943 -3.9696 -2.8925 35 1 6.0912 -2.3846 -2.4373 36 1 8.0741 -3.6152 -3.0013 37 1 7.4170 -5.1441 -2.3274 38 1 8.3914 -2.6545 -0.8161 39 1 8.7586 -4.3757 -0.4745 40 1 6.8907 -1.6802 0.5992 41 1 5.7807 -2.6174 1.6276 42 1 7.7626 -3.8535 2.5549 43 1 8.8268 -2.7870 1.6071 44 1 8.4771 -1.9575 3.8198 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779283281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:59 Heat of formation + Delta-G solvation = -75.385283 kcal Electronic energy + Delta-G solvation = -25309.982456 eV Core-core repulsion = 21805.331404 eV Total energy + Delta-G solvation = -3504.651052 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.95275 -37.93727 -36.96044 -36.50755 -33.48880 -32.59852 -31.55169 -31.07502 -29.35020 -27.29148 -26.65767 -24.97655 -23.48220 -22.15834 -20.98540 -20.80869 -19.70800 -18.55133 -17.30027 -17.05746 -16.67787 -16.08088 -15.40202 -15.24214 -14.60353 -14.39887 -14.18970 -13.78489 -13.59895 -13.38455 -13.25330 -13.14185 -12.55150 -12.45835 -12.18520 -11.84763 -11.71427 -11.49197 -11.30756 -11.10012 -11.08324 -10.98784 -10.92570 -10.81428 -10.71283 -10.57571 -10.28184 -9.95943 -9.46838 -9.36939 -9.10315 -9.05935 -8.30499 -7.25252 -7.11812 -6.54230 -4.31261 2.82935 3.00160 3.12802 3.19009 3.30174 3.32696 3.43081 4.03542 4.26348 4.47745 4.51640 4.78646 4.81318 5.07872 5.17763 5.26628 5.29723 5.40328 5.46051 5.56838 5.60570 5.70550 5.75400 5.82155 5.85150 6.02372 6.07276 6.12039 6.27985 6.31724 6.41964 6.47583 6.55725 6.75830 6.85759 7.20233 7.36664 7.50709 7.60602 7.72790 7.93513 7.98656 8.17856 8.18617 8.40084 8.74042 8.87792 9.02124 9.08850 10.36900 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011367 B = 0.005416 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.684421 B = 5168.914559 C = 6227.392972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.457 4.457 8 H 0.072 0.928 9 C 0.124 3.876 10 C -0.148 4.148 11 C -0.114 4.114 12 C -0.229 4.229 13 C -0.089 4.089 14 C -0.172 4.172 15 C -0.066 4.066 16 C 0.533 3.467 17 O -0.516 6.516 18 N -0.628 5.628 19 C 0.101 3.899 20 C -0.133 4.133 21 C -0.130 4.130 22 C 0.144 3.856 23 H 0.071 0.929 24 C -0.135 4.135 25 C 0.083 3.917 26 O -0.571 6.571 27 H 0.276 0.724 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.062 -4.490 -3.919 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.090 0.910 9 C 0.121 3.879 10 C -0.167 4.167 11 C -0.132 4.132 12 C -0.249 4.249 13 C -0.107 4.107 14 C -0.174 4.174 15 C -0.106 4.106 16 C 0.323 3.677 17 O -0.389 6.389 18 N -0.366 5.366 19 C -0.022 4.022 20 C -0.171 4.171 21 C -0.168 4.168 22 C 0.040 3.960 23 H 0.089 0.911 24 C -0.173 4.173 25 C 0.005 3.995 26 O -0.376 6.376 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 15.070 -4.266 -3.612 16.074 hybrid contribution 0.846 0.589 0.241 1.058 sum 15.917 -3.678 -3.371 16.680 Atomic orbital electron populations 1.69765 1.07196 1.28509 1.38486 1.25835 0.94850 1.00924 0.92627 0.86331 0.80511 0.81003 0.79009 1.19597 1.20262 1.18658 1.19436 0.94269 0.89976 1.45103 0.91002 1.17390 0.91753 0.91227 0.87483 1.21550 0.97185 0.96148 1.01814 1.20747 0.98294 0.94314 0.99863 1.20362 0.98117 0.98004 1.08377 1.20301 0.95159 0.95414 0.99847 1.19206 0.95823 0.96048 1.06275 1.20266 0.91436 1.02938 0.95912 1.20963 0.81186 0.75478 0.90083 1.90685 1.81951 1.46205 1.20061 1.48726 1.04981 1.74965 1.07906 1.22212 0.95021 1.00702 0.84296 1.22732 0.95777 1.01353 0.97202 1.22765 0.96485 1.02478 0.95048 1.21306 0.85397 0.98187 0.91147 0.91057 1.21892 1.00420 0.98759 0.96249 1.22093 0.97753 0.90812 0.88852 1.86559 1.57173 1.54914 1.38939 0.91272 0.85564 0.89520 0.89633 0.89775 0.90822 0.88516 0.90475 0.91486 0.89995 0.90717 0.90447 0.90371 0.91248 0.89243 0.93754 0.93933 0.77857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.68 10.62 55.55 0.59 -21.09 16 2 C 0.07 1.89 5.41 -17.34 -0.09 1.79 16 3 Si 0.91 19.72 29.56 -169.99 -5.02 14.70 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.46 -12.46 7.94 -37.74 -0.30 -12.76 16 8 H 0.07 1.95 6.95 -52.49 -0.36 1.59 16 9 C 0.12 3.40 5.55 -106.82 -0.59 2.81 16 10 C -0.15 -4.05 8.67 -38.87 -0.34 -4.39 16 11 C -0.11 -2.84 10.02 -39.66 -0.40 -3.24 16 12 C -0.23 -5.44 10.05 -39.29 -0.39 -5.84 16 13 C -0.09 -2.10 9.66 -39.66 -0.38 -2.48 16 14 C -0.17 -4.25 4.43 -103.91 -0.46 -4.71 16 15 C -0.07 -1.34 4.31 -29.03 -0.13 -1.47 16 16 C 0.53 10.91 7.17 -10.98 -0.08 10.83 16 17 O -0.52 -12.80 15.20 5.55 0.08 -12.72 16 18 N -0.63 -9.91 3.07 -163.15 -0.50 -10.42 16 19 C 0.10 1.16 6.64 -2.64 -0.02 1.14 16 20 C -0.13 -1.13 7.07 -24.70 -0.17 -1.30 16 21 C -0.13 -1.20 5.77 -24.89 -0.14 -1.34 16 22 C 0.14 1.95 2.85 -66.96 -0.19 1.76 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 C -0.13 -2.07 5.07 -26.73 -0.14 -2.21 16 25 C 0.08 1.01 6.83 37.16 0.25 1.26 16 26 O -0.57 -7.67 13.66 -35.23 -0.48 -8.16 16 27 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 28 H 0.13 3.59 6.15 -52.49 -0.32 3.26 16 29 H 0.09 1.94 8.06 -52.49 -0.42 1.51 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.07 1.26 7.67 -51.93 -0.40 0.86 16 33 H 0.10 1.96 7.20 -51.93 -0.37 1.59 16 34 H 0.08 0.81 7.51 -51.93 -0.39 0.42 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.68 7.76 -51.93 -0.40 0.28 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 41 H 0.09 1.80 6.86 -51.93 -0.36 1.45 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.04 0.40 7.68 -51.93 -0.40 0.00 16 44 H 0.38 2.95 9.12 45.56 0.42 3.37 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -33.60 357.10 -9.47 -43.07 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.95 Total: 9.37 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -3.57 Total: -20.14 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.09 Total: -31.51 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.40 Total: -20.87 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.60 -9.47 -43.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779283281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.313 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds