Wall clock time and date at job start Tue Mar 31 2020 07:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86797 * 120.00393 * 2 1 4 4 H 1.48496 * 109.47639 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46972 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.47004 * 59.99575 * 3 2 1 7 7 C 1.39949 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00198 * 170.15417 * 7 2 1 9 9 C 1.41398 * 119.99663 * 350.15611 * 7 2 1 10 10 C 1.40735 * 120.24417 * 330.41170 * 9 7 2 11 11 C 1.37593 * 119.74470 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24985 * 359.97438 * 11 10 9 13 13 C 1.38611 * 120.50001 * 359.72708 * 12 11 10 14 14 C 1.37645 * 120.24576 * 0.55569 * 13 12 11 15 15 C 1.50699 * 120.12639 * 179.72479 * 14 13 12 16 16 C 1.50703 * 109.46795 * 264.72392 * 15 14 13 17 17 O 1.21274 * 120.00174 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99858 * 180.02562 * 16 15 14 19 19 C 1.47422 * 125.64995 * 5.03473 * 18 16 15 20 20 C 1.54908 * 104.83375 * 155.92135 * 19 18 16 21 21 C 1.55155 * 101.58155 * 37.00571 * 20 19 18 22 22 C 1.47021 * 125.64449 * 185.09206 * 18 16 15 23 23 H 1.08997 * 109.88122 * 300.42191 * 22 18 16 24 24 C 1.52995 * 110.01476 * 61.52252 * 22 18 16 25 25 C 1.53004 * 109.47088 * 183.61450 * 24 22 18 26 26 O 1.42905 * 109.46732 * 184.70743 * 25 24 22 27 27 H 0.97002 * 119.99757 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12724 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87852 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.74585 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.87921 * 180.29892 * 13 12 11 32 32 H 1.08996 * 109.47442 * 144.72520 * 15 14 13 33 33 H 1.09000 * 109.47468 * 24.72251 * 15 14 13 34 34 H 1.08998 * 110.36752 * 37.07538 * 19 18 16 35 35 H 1.09005 * 110.45519 * 274.80682 * 19 18 16 36 36 H 1.09000 * 110.99849 * 278.93158 * 20 19 18 37 37 H 1.08997 * 111.03908 * 155.09906 * 20 19 18 38 38 H 1.08995 * 110.72054 * 206.13594 * 21 20 19 39 39 H 1.09005 * 110.87008 * 82.93699 * 21 20 19 40 40 H 1.09004 * 109.47319 * 303.61534 * 24 22 18 41 41 H 1.08999 * 109.47272 * 63.61225 * 24 22 18 42 42 H 1.08994 * 109.47015 * 304.70265 * 25 24 22 43 43 H 1.08997 * 109.46999 * 64.70829 * 25 24 22 44 44 H 0.96700 * 113.99301 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0760 -1.2190 -0.1594 9 6 1.3165 -2.4274 0.2104 10 6 0.1499 -2.4525 0.9973 11 6 -0.5145 -3.6410 1.1952 12 6 -0.0390 -4.8109 0.6225 13 6 1.1055 -4.7969 -0.1594 14 6 1.7895 -3.6205 -0.3661 15 6 3.0370 -3.6094 -1.2115 16 6 4.2476 -3.7298 -0.3220 17 8 4.1108 -3.8166 0.8799 18 7 5.4823 -3.7411 -0.8623 19 6 5.7982 -3.5392 -2.2881 20 6 7.2617 -3.0317 -2.3020 21 6 7.8894 -3.8592 -1.1493 22 6 6.7371 -3.9580 -0.1275 23 1 6.8549 -3.1920 0.6391 24 6 6.7324 -5.3446 0.5190 25 6 8.0023 -5.5225 1.3537 26 8 8.0514 -6.8548 1.8681 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2223 -1.5424 1.4440 29 1 -1.4097 -3.6629 1.7990 30 1 -0.5667 -5.7394 0.7835 31 1 1.4642 -5.7131 -0.6046 32 1 3.0886 -2.6753 -1.7708 33 1 3.0122 -4.4484 -1.9069 34 1 5.1334 -2.7923 -2.7218 35 1 5.7176 -4.4798 -2.8330 36 1 7.3070 -1.9642 -2.0863 37 1 7.7449 -3.2569 -3.2527 38 1 8.7427 -3.3354 -0.7189 39 1 8.1822 -4.8499 -1.4973 40 1 5.8580 -5.4426 1.1625 41 1 6.6986 -6.1079 -0.2584 42 1 8.8764 -5.3421 0.7281 43 1 7.9953 -4.8134 2.1815 44 1 8.8321 -7.0393 2.4080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779283284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:02 Heat of formation + Delta-G solvation = -76.464962 kcal Electronic energy + Delta-G solvation = -25159.484931 eV Core-core repulsion = 21654.787060 eV Total energy + Delta-G solvation = -3504.697871 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95286 -37.95348 -37.01537 -36.52018 -33.54074 -32.63265 -31.55325 -31.07354 -29.38365 -27.29819 -26.65484 -24.99932 -23.52211 -22.19885 -21.00047 -20.82427 -19.69232 -18.56651 -17.35360 -17.08454 -16.66345 -16.10682 -15.40081 -15.27765 -14.76899 -14.38540 -14.18844 -13.82223 -13.63633 -13.38344 -13.22371 -13.14354 -12.59079 -12.47341 -12.20921 -11.90541 -11.69445 -11.50577 -11.28573 -11.13903 -11.13335 -11.01557 -10.94850 -10.82882 -10.75860 -10.60080 -10.33057 -10.02173 -9.44443 -9.31070 -9.16599 -9.07545 -8.30660 -7.25902 -7.19399 -6.63782 -4.31088 2.80881 2.98497 3.09790 3.14862 3.29396 3.33290 3.41139 3.98372 4.19623 4.47364 4.53036 4.73903 4.83326 5.03864 5.12738 5.21979 5.29500 5.40242 5.43576 5.57439 5.62033 5.71160 5.76361 5.81446 5.86185 6.02459 6.04768 6.13723 6.24120 6.32166 6.33260 6.47854 6.55672 6.72675 6.86043 7.15575 7.34720 7.47481 7.50447 7.70046 7.93113 7.99200 8.14038 8.17297 8.37348 8.70596 8.87939 8.98033 9.06623 10.30076 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.004838 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.056889 B = 5786.068777 C = 6967.885480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.074 3.926 3 Si 0.905 3.095 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.457 4.457 8 H 0.073 0.927 9 C 0.128 3.872 10 C -0.153 4.153 11 C -0.110 4.110 12 C -0.234 4.234 13 C -0.084 4.084 14 C -0.177 4.177 15 C -0.065 4.065 16 C 0.533 3.467 17 O -0.516 6.516 18 N -0.628 5.628 19 C 0.101 3.899 20 C -0.133 4.133 21 C -0.130 4.130 22 C 0.142 3.858 23 H 0.073 0.927 24 C -0.131 4.131 25 C 0.081 3.919 26 O -0.574 6.574 27 H 0.277 0.723 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.542 -4.716 -4.772 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.487 4.487 8 H 0.091 0.909 9 C 0.125 3.875 10 C -0.172 4.172 11 C -0.129 4.129 12 C -0.253 4.253 13 C -0.103 4.103 14 C -0.178 4.178 15 C -0.105 4.105 16 C 0.323 3.677 17 O -0.389 6.389 18 N -0.365 5.365 19 C -0.022 4.022 20 C -0.171 4.171 21 C -0.168 4.168 22 C 0.038 3.962 23 H 0.091 0.909 24 C -0.170 4.170 25 C 0.003 3.997 26 O -0.379 6.379 27 H 0.088 0.912 28 H 0.137 0.863 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 14.578 -4.623 -4.403 15.915 hybrid contribution 0.875 0.864 0.264 1.258 sum 15.453 -3.759 -4.139 16.434 Atomic orbital electron populations 1.69802 1.07301 1.28667 1.37285 1.25852 0.94773 1.00970 0.92558 0.86315 0.80818 0.81401 0.78478 1.18677 1.20040 1.19840 1.19485 0.95299 0.90327 1.43599 0.90918 1.17355 0.91145 0.91310 0.87650 1.21349 0.98296 0.96434 1.01103 1.20699 0.98578 0.93671 0.99917 1.20333 1.00561 0.96678 1.07720 1.20311 0.95741 0.95467 0.98764 1.19129 0.98058 0.94726 1.05932 1.20252 0.90567 1.02802 0.96885 1.20974 0.82460 0.74847 0.89421 1.90678 1.85233 1.47632 1.15377 1.48717 1.05413 1.73989 1.08410 1.22252 0.96287 1.00676 0.83027 1.22774 0.95042 1.00449 0.98862 1.22758 0.97091 1.00928 0.95975 1.21300 0.84293 0.96163 0.94467 0.90892 1.21863 0.98426 0.96769 0.99898 1.22125 0.97634 0.83458 0.96513 1.86512 1.48776 1.30899 1.71693 0.91181 0.86316 0.89550 0.89632 0.89760 0.88670 0.90717 0.90188 0.91734 0.90500 0.90028 0.90383 0.90515 0.89715 0.91303 0.93719 0.93574 0.77729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.12 10.85 55.55 0.60 -20.52 16 2 C 0.07 1.90 5.27 -17.34 -0.09 1.81 16 3 Si 0.90 19.18 29.57 -169.99 -5.03 14.15 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.46 -12.26 8.06 -37.74 -0.30 -12.56 16 8 H 0.07 1.92 6.78 -52.49 -0.36 1.57 16 9 C 0.13 3.49 5.54 -106.82 -0.59 2.89 16 10 C -0.15 -4.16 8.66 -38.87 -0.34 -4.50 16 11 C -0.11 -2.75 10.02 -39.66 -0.40 -3.15 16 12 C -0.23 -5.58 10.05 -39.29 -0.39 -5.97 16 13 C -0.08 -2.01 9.66 -39.66 -0.38 -2.40 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.07 -1.34 4.29 -29.03 -0.12 -1.46 16 16 C 0.53 10.92 7.20 -10.98 -0.08 10.84 16 17 O -0.52 -12.78 15.22 5.56 0.08 -12.70 16 18 N -0.63 -9.94 3.07 -163.02 -0.50 -10.44 16 19 C 0.10 1.18 6.65 -2.53 -0.02 1.16 16 20 C -0.13 -1.21 7.09 -24.58 -0.17 -1.38 16 21 C -0.13 -1.20 5.46 -24.90 -0.14 -1.34 16 22 C 0.14 1.92 2.88 -66.95 -0.19 1.73 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 C -0.13 -1.85 5.04 -26.73 -0.13 -1.98 16 25 C 0.08 0.91 6.95 37.16 0.26 1.16 16 26 O -0.57 -6.79 13.66 -35.23 -0.48 -7.27 16 27 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 28 H 0.12 3.33 6.25 -52.49 -0.33 3.00 16 29 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.10 1.91 6.75 -51.93 -0.35 1.56 16 33 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 34 H 0.08 0.93 7.51 -51.93 -0.39 0.54 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.65 7.79 -51.93 -0.40 0.24 16 40 H 0.08 1.54 6.93 -51.93 -0.36 1.18 16 41 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 42 H 0.04 0.39 7.29 -51.93 -0.38 0.01 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.38 2.47 9.12 45.56 0.42 2.88 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -33.12 356.77 -9.43 -42.55 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.93 Total: 8.82 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -3.56 Total: -19.98 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.10 Total: -30.95 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.40 Total: -19.97 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.12 -9.43 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779283284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.911 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds