Wall clock time and date at job start Tue Mar 31 2020 07:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86797 * 120.00393 * 2 1 4 4 H 1.48496 * 109.47639 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46972 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.47004 * 59.99575 * 3 2 1 7 7 C 1.39949 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00198 * 170.15417 * 7 2 1 9 9 C 1.41398 * 119.99663 * 350.15611 * 7 2 1 10 10 C 1.40735 * 120.24417 * 330.41170 * 9 7 2 11 11 C 1.37593 * 119.74470 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24985 * 359.97438 * 11 10 9 13 13 C 1.38611 * 120.50001 * 359.72708 * 12 11 10 14 14 C 1.37645 * 120.24576 * 0.55569 * 13 12 11 15 15 C 1.50699 * 120.12639 * 179.72479 * 14 13 12 16 16 C 1.50703 * 109.46795 * 264.72392 * 15 14 13 17 17 O 1.21274 * 120.00174 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99858 * 180.02562 * 16 15 14 19 19 C 1.47422 * 125.64995 * 5.03473 * 18 16 15 20 20 C 1.54908 * 104.83375 * 155.92135 * 19 18 16 21 21 C 1.55155 * 101.58155 * 37.00571 * 20 19 18 22 22 C 1.47021 * 125.64449 * 185.09206 * 18 16 15 23 23 H 1.08997 * 109.88122 * 300.42191 * 22 18 16 24 24 C 1.52995 * 110.01476 * 61.52252 * 22 18 16 25 25 C 1.53004 * 109.47088 * 183.61450 * 24 22 18 26 26 O 1.42905 * 109.46732 * 184.70743 * 25 24 22 27 27 H 0.97002 * 119.99757 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12724 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87852 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.74585 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.87921 * 180.29892 * 13 12 11 32 32 H 1.08996 * 109.47442 * 144.72520 * 15 14 13 33 33 H 1.09000 * 109.47468 * 24.72251 * 15 14 13 34 34 H 1.08998 * 110.36752 * 37.07538 * 19 18 16 35 35 H 1.09005 * 110.45519 * 274.80682 * 19 18 16 36 36 H 1.09000 * 110.99849 * 278.93158 * 20 19 18 37 37 H 1.08997 * 111.03908 * 155.09906 * 20 19 18 38 38 H 1.08995 * 110.72054 * 206.13594 * 21 20 19 39 39 H 1.09005 * 110.87008 * 82.93699 * 21 20 19 40 40 H 1.09004 * 109.47319 * 303.61534 * 24 22 18 41 41 H 1.08999 * 109.47272 * 63.61225 * 24 22 18 42 42 H 1.08994 * 109.47015 * 304.70265 * 25 24 22 43 43 H 1.08997 * 109.46999 * 64.70829 * 25 24 22 44 44 H 0.96700 * 113.99301 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0760 -1.2190 -0.1594 9 6 1.3165 -2.4274 0.2104 10 6 0.1499 -2.4525 0.9973 11 6 -0.5145 -3.6410 1.1952 12 6 -0.0390 -4.8109 0.6225 13 6 1.1055 -4.7969 -0.1594 14 6 1.7895 -3.6205 -0.3661 15 6 3.0370 -3.6094 -1.2115 16 6 4.2476 -3.7298 -0.3220 17 8 4.1108 -3.8166 0.8799 18 7 5.4823 -3.7411 -0.8623 19 6 5.7982 -3.5392 -2.2881 20 6 7.2617 -3.0317 -2.3020 21 6 7.8894 -3.8592 -1.1493 22 6 6.7371 -3.9580 -0.1275 23 1 6.8549 -3.1920 0.6391 24 6 6.7324 -5.3446 0.5190 25 6 8.0023 -5.5225 1.3537 26 8 8.0514 -6.8548 1.8681 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2223 -1.5424 1.4440 29 1 -1.4097 -3.6629 1.7990 30 1 -0.5667 -5.7394 0.7835 31 1 1.4642 -5.7131 -0.6046 32 1 3.0886 -2.6753 -1.7708 33 1 3.0122 -4.4484 -1.9069 34 1 5.1334 -2.7923 -2.7218 35 1 5.7176 -4.4798 -2.8330 36 1 7.3070 -1.9642 -2.0863 37 1 7.7449 -3.2569 -3.2527 38 1 8.7427 -3.3354 -0.7189 39 1 8.1822 -4.8499 -1.4973 40 1 5.8580 -5.4426 1.1625 41 1 6.6986 -6.1079 -0.2584 42 1 8.8764 -5.3421 0.7281 43 1 7.9953 -4.8134 2.1815 44 1 8.8321 -7.0393 2.4080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779283284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:02 Heat of formation + Delta-G solvation = -98.438189 kcal Electronic energy + Delta-G solvation = -25160.437762 eV Core-core repulsion = 21654.787060 eV Total energy + Delta-G solvation = -3505.650701 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26293 -39.58299 -38.41322 -37.63700 -35.48645 -33.95759 -32.96566 -32.30564 -31.34206 -28.68174 -27.94962 -26.90139 -24.66200 -23.22177 -22.82633 -22.15834 -21.20260 -19.91700 -19.04825 -18.38360 -17.90363 -17.41071 -17.03892 -16.42530 -16.34346 -16.03548 -15.60480 -15.33208 -14.94960 -14.76507 -14.43078 -14.38623 -14.11460 -13.72897 -13.53619 -13.41891 -13.24899 -12.98383 -12.89676 -12.77448 -12.62813 -12.49078 -12.13842 -12.09839 -12.04818 -11.76533 -11.59914 -11.35480 -11.22593 -11.07539 -10.91933 -10.68465 -9.59352 -9.21983 -9.16075 -8.55690 -6.33091 0.96676 1.10736 1.34501 1.48492 1.49644 1.79262 2.11399 2.20177 2.79258 3.31574 3.53359 3.68492 3.75429 4.01966 4.11323 4.12686 4.22541 4.31026 4.36467 4.40515 4.43931 4.54100 4.56927 4.62506 4.68197 4.73881 4.81694 4.93229 4.98280 5.02886 5.08186 5.14865 5.18194 5.19368 5.35328 5.38291 5.52563 5.58673 5.76348 6.01664 6.15215 6.18306 6.40845 6.59863 6.72616 6.89526 6.98983 7.08982 7.36551 8.40503 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.004838 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.056889 B = 5786.068777 C = 6967.885480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.033 3.967 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.270 1.270 7 C -0.482 4.482 8 H 0.065 0.935 9 C 0.095 3.905 10 C -0.186 4.186 11 C -0.119 4.119 12 C -0.236 4.236 13 C -0.096 4.096 14 C -0.185 4.185 15 C -0.061 4.061 16 C 0.530 3.470 17 O -0.574 6.574 18 N -0.625 5.625 19 C 0.087 3.913 20 C -0.124 4.124 21 C -0.116 4.116 22 C 0.134 3.866 23 H 0.053 0.947 24 C -0.126 4.126 25 C 0.086 3.914 26 O -0.598 6.598 27 H 0.285 0.715 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.300 -5.109 -6.732 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.195 1.195 7 C -0.513 4.513 8 H 0.084 0.916 9 C 0.093 3.907 10 C -0.205 4.205 11 C -0.138 4.138 12 C -0.255 4.255 13 C -0.114 4.114 14 C -0.187 4.187 15 C -0.101 4.101 16 C 0.320 3.680 17 O -0.452 6.452 18 N -0.360 5.360 19 C -0.035 4.035 20 C -0.161 4.161 21 C -0.154 4.154 22 C 0.030 3.970 23 H 0.071 0.929 24 C -0.164 4.164 25 C 0.008 3.992 26 O -0.406 6.406 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.125 0.875 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.061 0.939 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 17.381 -5.033 -6.404 19.195 hybrid contribution 0.015 0.856 0.869 1.220 sum 17.396 -4.177 -5.535 18.727 Atomic orbital electron populations 1.69870 1.08675 1.29952 1.37628 1.26670 0.95563 1.04118 0.91649 0.85253 0.79124 0.76847 0.79043 1.18733 1.18278 1.19455 1.19584 0.94999 0.91338 1.45340 0.91644 1.17745 0.91749 0.92742 0.88484 1.21355 0.99709 0.96748 1.02719 1.20975 0.99195 0.93428 1.00180 1.20740 1.00594 0.97407 1.06773 1.20732 0.95668 0.96327 0.98701 1.19610 0.99313 0.94277 1.05452 1.20221 0.89198 1.04011 0.96642 1.20846 0.83995 0.74647 0.88521 1.90648 1.86368 1.50707 1.17522 1.48717 1.04794 1.71795 1.10703 1.22652 0.98366 1.01999 0.80448 1.22796 0.92891 1.00037 1.00415 1.22769 0.95654 1.02455 0.94520 1.21540 0.84908 0.95121 0.95411 0.92929 1.21772 0.98015 0.97187 0.99473 1.22082 0.97249 0.83269 0.96631 1.86449 1.50702 1.31069 1.72416 0.90479 0.88260 0.87465 0.86562 0.86866 0.88721 0.87649 0.90418 0.89578 0.90939 0.86517 0.87955 0.88638 0.94899 0.91125 0.89977 0.93890 0.75116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.32 10.85 21.83 0.24 -45.08 16 2 C 0.03 1.73 5.27 85.26 0.45 2.18 16 3 Si 0.98 40.01 29.57 68.60 2.03 42.03 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.48 -27.00 8.06 23.46 0.19 -26.81 16 8 H 0.07 3.63 6.78 -2.91 -0.02 3.61 16 9 C 0.09 5.41 5.54 -21.29 -0.12 5.29 16 10 C -0.19 -10.63 8.66 22.73 0.20 -10.43 16 11 C -0.12 -6.09 10.02 22.22 0.22 -5.87 16 12 C -0.24 -11.20 10.05 22.46 0.23 -10.98 16 13 C -0.10 -4.57 9.66 22.22 0.21 -4.36 16 14 C -0.18 -9.37 4.43 -19.40 -0.09 -9.45 16 15 C -0.06 -2.52 4.29 29.10 0.12 -2.40 16 16 C 0.53 22.26 7.20 87.66 0.63 22.89 16 17 O -0.57 -30.01 15.22 -3.01 -0.05 -30.05 16 18 N -0.63 -19.49 3.07 -788.06 -2.42 -21.91 16 19 C 0.09 1.82 6.65 86.86 0.58 2.40 16 20 C -0.12 -1.75 7.09 31.99 0.23 -1.52 16 21 C -0.12 -1.71 5.46 31.78 0.17 -1.53 16 22 C 0.13 3.49 2.88 45.34 0.13 3.62 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 C -0.13 -3.52 5.04 30.59 0.15 -3.37 16 25 C 0.09 1.78 6.95 71.98 0.50 2.28 16 26 O -0.60 -13.31 13.66 -148.98 -2.04 -15.35 16 27 H 0.28 14.00 8.30 -92.71 -0.77 13.23 16 28 H 0.10 5.92 6.25 -2.91 -0.02 5.91 16 29 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 30 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 32 H 0.09 3.87 6.75 -2.39 -0.02 3.85 16 33 H 0.11 3.57 8.05 -2.39 -0.02 3.55 16 34 H 0.08 1.67 7.51 -2.39 -0.02 1.65 16 35 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 1.12 7.79 -2.38 -0.02 1.10 16 40 H 0.03 1.25 6.93 -2.38 -0.02 1.23 16 41 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 42 H 0.08 1.11 7.29 -2.39 -0.02 1.09 16 43 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.40 4.46 9.12 -74.06 -0.68 3.79 16 Total: -1.00 -77.54 356.77 1.90 -75.63 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: 0.33 Total: 32.77 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 3.81 Total: -38.06 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -2.18 Total: -66.98 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -2.08 Total: -45.40 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Total: -77.54 1.90 -75.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779283284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.806 kcal (2) G-P(sol) polarization free energy of solvation -77.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds