Wall clock time and date at job start Tue Mar 31 2020 08:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48497 * 109.47594 * 270.00483 * 3 2 1 5 5 H 1.48500 * 109.47175 * 30.00390 * 3 2 1 6 6 H 1.48499 * 109.47152 * 149.99916 * 3 2 1 7 7 C 1.39939 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00007 * 163.70830 * 7 2 1 9 9 C 1.41397 * 120.00212 * 343.70659 * 7 2 1 10 10 C 1.40732 * 120.24161 * 334.19780 * 9 7 2 11 11 C 1.37598 * 119.74205 * 180.31476 * 10 9 7 12 12 C 1.38660 * 120.24968 * 359.66153 * 11 10 9 13 13 C 1.38604 * 120.50016 * 0.02562 * 12 11 10 14 14 C 1.37640 * 120.25287 * 0.02726 * 13 12 11 15 15 C 1.50698 * 120.13507 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47116 * 265.00051 * 15 14 13 17 17 O 1.21284 * 119.99603 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.46499 * 119.99953 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47134 * 179.97438 * 19 18 16 21 21 H 1.08995 * 110.43955 * 52.45531 * 20 19 18 22 22 C 1.54899 * 110.48665 * 289.77189 * 20 19 18 23 23 C 1.54964 * 102.77782 * 203.40618 * 22 20 19 24 24 C 1.54266 * 104.16173 * 37.88761 * 23 22 20 25 25 H 1.09000 * 110.03469 * 217.13726 * 24 23 22 26 26 O 1.42896 * 110.03245 * 95.75479 * 24 23 22 27 27 C 1.53875 * 106.64007 * 336.44748 * 24 23 22 28 28 H 0.97000 * 120.00264 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.12966 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.87498 * 179.67921 * 11 10 9 31 31 H 1.08000 * 119.74760 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.87617 * 180.02562 * 13 12 11 33 33 H 1.08994 * 109.47299 * 144.99551 * 15 14 13 34 34 H 1.09003 * 109.46587 * 24.99716 * 15 14 13 35 35 H 0.97002 * 120.00032 * 359.97438 * 18 16 15 36 36 H 1.09003 * 109.47659 * 59.99927 * 19 18 16 37 37 H 1.09003 * 109.47206 * 299.99493 * 19 18 16 38 38 H 1.08998 * 110.75359 * 321.69724 * 22 20 19 39 39 H 1.08997 * 110.75255 * 84.87877 * 22 20 19 40 40 H 1.09000 * 110.47720 * 279.23884 * 23 22 20 41 41 H 1.08993 * 110.53264 * 156.56662 * 23 22 20 42 42 H 0.96694 * 114.00181 * 62.09485 * 26 24 23 43 43 H 1.09004 * 110.03605 * 119.25984 * 27 24 23 44 44 H 1.09003 * 110.03336 * 240.69399 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4896 2.0466 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5397 1.4402 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0554 -1.2306 -0.2629 9 6 1.3436 -2.4120 0.3425 10 6 0.2102 -2.3815 1.1762 11 6 -0.4245 -3.5562 1.5087 12 6 0.0444 -4.7661 1.0200 13 6 1.1558 -4.8074 0.1929 14 6 1.8072 -3.6450 -0.1520 15 6 3.0157 -3.6931 -1.0510 16 6 4.2663 -3.7191 -0.2105 17 8 4.1842 -3.6999 0.9994 18 7 5.4758 -3.7636 -0.8033 19 6 6.6915 -3.7883 0.0137 20 6 7.9185 -3.8385 -0.8989 21 1 7.8767 -3.0378 -1.6372 22 6 8.0193 -5.2180 -1.5963 23 6 9.5261 -5.3168 -1.9442 24 6 10.2359 -4.6786 -0.7323 25 1 11.1044 -4.1101 -1.0650 26 8 10.6394 -5.6936 0.1891 27 6 9.2142 -3.7394 -0.0676 28 1 -0.4850 0.8400 0.0004 29 1 -0.1567 -1.4402 1.5580 30 1 -1.2914 -3.5357 2.1526 31 1 -0.4603 -5.6832 1.2858 32 1 1.5122 -5.7554 -0.1824 33 1 3.0270 -2.8117 -1.6921 34 1 2.9739 -4.5907 -1.6681 35 1 5.5414 -3.7793 -1.7710 36 1 6.6803 -4.6693 0.6555 37 1 6.7334 -2.8902 0.6301 38 1 7.7274 -6.0173 -0.9152 39 1 7.4091 -5.2398 -2.4992 40 1 9.7452 -4.7565 -2.8531 41 1 9.8251 -6.3590 -2.0559 42 1 11.2758 -6.3243 -0.1745 43 1 9.0255 -4.0583 0.9575 44 1 9.5868 -2.7151 -0.0778 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789858262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:10 Heat of formation + Delta-G solvation = -113.772936 kcal Electronic energy + Delta-G solvation = -24332.052792 eV Core-core repulsion = 20825.737126 eV Total energy + Delta-G solvation = -3506.315666 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87768 -39.84688 -39.02001 -36.72423 -35.49418 -34.78524 -33.41376 -31.35060 -30.65171 -29.33263 -28.27826 -26.88445 -25.12285 -22.81876 -22.21106 -21.55841 -21.32645 -20.52444 -19.06407 -18.12042 -17.74557 -17.35262 -17.16344 -16.67305 -16.29528 -16.14940 -15.66530 -15.34290 -15.30730 -14.70848 -14.37214 -14.34202 -13.83150 -13.58832 -13.51643 -13.36996 -13.35143 -12.88983 -12.74484 -12.65082 -12.57793 -12.48852 -12.12889 -12.07880 -11.79747 -11.65960 -11.44933 -11.31695 -11.20839 -11.01370 -10.81591 -10.68497 -9.98751 -9.22014 -9.15301 -8.58741 -6.28596 1.00259 1.14056 1.35659 1.47113 1.54066 1.86435 2.20375 2.38946 2.79547 3.33476 3.56274 3.66806 3.78577 3.94996 4.17176 4.25443 4.33270 4.41602 4.42605 4.48555 4.53139 4.62781 4.64188 4.71840 4.74055 4.81421 4.87154 4.94798 5.01564 5.08196 5.10705 5.20729 5.22416 5.30085 5.37459 5.42199 5.55731 5.60217 5.78546 6.04619 6.17741 6.21948 6.42894 6.69514 6.77017 6.96847 7.00151 7.12241 7.48277 8.37806 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.003522 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.316352 B = 7947.286982 C = 9221.806976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.972 3.028 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.483 4.483 8 H 0.071 0.929 9 C 0.095 3.905 10 C -0.195 4.195 11 C -0.118 4.118 12 C -0.243 4.243 13 C -0.093 4.093 14 C -0.187 4.187 15 C -0.069 4.069 16 C 0.514 3.486 17 O -0.579 6.579 18 N -0.720 5.720 19 C 0.130 3.870 20 C -0.092 4.092 21 H 0.101 0.899 22 C -0.118 4.118 23 C -0.149 4.149 24 C 0.098 3.902 25 H 0.075 0.925 26 O -0.589 6.589 27 C -0.119 4.119 28 H 0.286 0.714 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.414 0.586 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.393 0.607 43 H 0.059 0.941 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.041 -6.604 -9.002 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.513 4.513 8 H 0.089 0.911 9 C 0.093 3.907 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.262 4.262 13 C -0.111 4.111 14 C -0.189 4.189 15 C -0.109 4.109 16 C 0.302 3.698 17 O -0.458 6.458 18 N -0.375 5.375 19 C 0.006 3.994 20 C -0.111 4.111 21 H 0.119 0.881 22 C -0.155 4.155 23 C -0.186 4.186 24 C 0.040 3.960 25 H 0.093 0.907 26 O -0.398 6.398 27 C -0.157 4.157 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.132 0.868 35 H 0.251 0.749 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.242 0.758 43 H 0.078 0.922 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.383 -6.112 -7.765 20.871 hybrid contribution 0.193 0.553 -0.178 0.612 sum 18.575 -5.559 -7.943 20.953 Atomic orbital electron populations 1.69881 1.08824 1.30209 1.36413 1.26672 0.95429 1.04198 0.91551 0.85366 0.78870 0.76675 0.79806 1.17713 1.19291 1.19347 1.19616 0.97107 0.91956 1.42611 0.91089 1.17751 0.91351 0.92883 0.88752 1.21309 1.00604 0.96805 1.02707 1.20950 0.99251 0.93396 1.00049 1.20719 1.01650 0.96745 1.07116 1.20748 0.95741 0.96674 0.97928 1.19568 1.00436 0.93418 1.05465 1.20285 0.88961 1.04676 0.96929 1.21193 0.85729 0.74332 0.88563 1.90665 1.87724 1.50281 1.17103 1.45861 1.04640 1.76032 1.10922 1.21309 0.83824 1.00389 0.93846 1.22184 0.91987 0.99732 0.97188 0.88099 1.22563 0.97165 0.95406 1.00370 1.23081 0.95029 1.02057 0.98443 1.22505 0.96371 0.88552 0.88589 0.90719 1.86539 1.66436 1.44046 1.42797 1.22201 0.93893 0.99908 0.99663 0.90370 0.88538 0.87694 0.86699 0.86550 0.88336 0.86838 0.74876 0.93518 0.93781 0.92792 0.89903 0.89055 0.90175 0.75757 0.92234 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.50 10.95 21.82 0.24 -44.26 16 2 C 0.04 1.86 5.16 85.26 0.44 2.30 16 3 Si 0.97 39.60 29.59 68.60 2.03 41.63 16 4 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.48 -26.59 8.14 23.46 0.19 -26.40 16 8 H 0.07 3.80 6.67 -2.91 -0.02 3.78 16 9 C 0.09 5.32 5.56 -21.29 -0.12 5.20 16 10 C -0.19 -11.05 8.68 22.73 0.20 -10.85 16 11 C -0.12 -5.98 10.02 22.22 0.22 -5.76 16 12 C -0.24 -11.37 10.05 22.46 0.23 -11.14 16 13 C -0.09 -4.28 9.66 22.22 0.21 -4.07 16 14 C -0.19 -9.19 4.43 -19.40 -0.09 -9.28 16 15 C -0.07 -2.66 5.18 29.10 0.15 -2.51 16 16 C 0.51 20.26 7.44 87.66 0.65 20.91 16 17 O -0.58 -29.34 16.03 -3.04 -0.05 -29.39 16 18 N -0.72 -20.25 5.45 -463.06 -2.52 -22.78 16 19 C 0.13 3.49 4.96 86.38 0.43 3.92 16 20 C -0.09 -1.62 2.89 -9.71 -0.03 -1.65 16 21 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 22 C -0.12 -1.77 6.19 31.91 0.20 -1.57 16 23 C -0.15 -1.63 6.57 31.69 0.21 -1.42 16 24 C 0.10 1.35 4.26 31.32 0.13 1.48 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 O -0.59 -9.72 13.22 -148.98 -1.97 -11.69 16 27 C -0.12 -2.08 6.18 31.32 0.19 -1.88 16 28 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 29 H 0.10 5.71 6.20 -2.91 -0.02 5.69 16 30 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 31 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 33 H 0.10 3.74 7.08 -2.39 -0.02 3.72 16 34 H 0.11 3.43 8.05 -2.39 -0.02 3.41 16 35 H 0.41 8.34 8.44 -92.71 -0.78 7.55 16 36 H 0.05 1.42 8.02 -2.39 -0.02 1.40 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 1.04 7.96 -2.39 -0.02 1.02 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.76 8.05 -2.39 -0.02 0.74 16 42 H 0.39 2.88 9.09 -74.06 -0.67 2.20 16 43 H 0.06 1.33 7.65 -2.39 -0.02 1.32 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -74.52 360.49 0.51 -74.01 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: -0.44 Total: 35.19 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 3.22 Total: -42.73 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -2.28 Total: -67.03 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -2.02 Total: -41.08 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -74.52 0.51 -74.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789858262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.760 kcal (2) G-P(sol) polarization free energy of solvation -74.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds