Wall clock time and date at job start Tue Mar 31 2020 08:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48504 * 109.47325 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46977 * 299.99903 * 3 2 1 6 6 H 1.48499 * 109.47134 * 59.99774 * 3 2 1 7 7 C 1.37885 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99447 * 184.94640 * 7 2 1 9 9 C 1.50694 * 120.00042 * 4.94818 * 7 2 1 10 10 H 1.09003 * 109.47234 * 329.57954 * 9 7 2 11 11 C 1.53003 * 109.47258 * 209.58350 * 9 7 2 12 12 C 1.50695 * 109.47067 * 64.99839 * 11 9 7 13 13 O 1.21282 * 120.00366 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00021 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00019 * 179.72486 * 14 12 11 16 16 H 1.09003 * 109.47346 * 35.27131 * 15 14 12 17 17 C 1.53003 * 109.47159 * 275.26643 * 15 14 12 18 18 O 1.42896 * 109.47270 * 295.00444 * 17 15 14 19 19 C 1.53006 * 109.47052 * 155.27203 * 15 14 12 20 20 C 1.53006 * 117.49624 * 248.74702 * 19 15 14 21 21 C 1.53004 * 117.49687 * 180.08869 * 19 15 14 22 22 C 1.50696 * 109.47097 * 89.57995 * 9 7 2 23 23 C 1.38232 * 120.00057 * 56.77449 * 22 9 7 24 24 C 1.38239 * 120.00051 * 179.81057 * 23 22 9 25 25 C 1.38238 * 120.00056 * 0.38919 * 24 23 22 26 26 C 1.38234 * 119.99722 * 359.86307 * 25 24 23 27 27 C 1.38236 * 120.00251 * 359.94906 * 26 25 24 28 28 H 0.97003 * 119.99754 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46514 * 305.00294 * 11 9 7 30 30 H 1.08994 * 109.47059 * 185.00091 * 11 9 7 31 31 H 0.97003 * 120.00107 * 359.97438 * 14 12 11 32 32 H 1.08999 * 109.46459 * 55.00454 * 17 15 14 33 33 H 1.09002 * 109.46772 * 174.99802 * 17 15 14 34 34 H 0.96700 * 113.99948 * 179.97438 * 18 17 15 35 35 H 1.08999 * 115.55120 * 34.41601 * 19 15 14 36 36 H 1.08997 * 117.49955 * 359.97438 * 20 19 15 37 37 H 1.09002 * 117.49811 * 145.02250 * 20 19 15 38 38 H 1.09008 * 117.49238 * 214.98033 * 21 19 15 39 39 H 1.08997 * 117.50075 * 359.97195 * 21 19 15 40 40 H 1.07999 * 120.00100 * 359.97438 * 23 22 9 41 41 H 1.07997 * 119.99797 * 180.23068 * 24 23 22 42 42 H 1.07997 * 119.99914 * 179.83485 * 25 24 23 43 43 H 1.08001 * 119.99915 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00152 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1957 0.0812 9 6 1.2553 -2.4968 -0.1114 10 1 0.2697 -2.3892 0.3416 11 6 2.0328 -3.5965 0.6145 12 6 2.0796 -3.2889 2.0890 13 8 1.5441 -2.2884 2.5171 14 7 2.7172 -4.1251 2.9320 15 6 2.7678 -3.8229 4.3646 16 1 1.8346 -3.3493 4.6692 17 6 3.9360 -2.8755 4.6451 18 8 5.1678 -3.5391 4.3549 19 6 2.9625 -5.1198 5.1528 20 6 1.7937 -5.6067 6.0118 21 6 3.0390 -5.0153 6.6773 22 6 1.1026 -2.8652 -1.5647 23 6 2.2212 -2.9907 -2.3671 24 6 2.0815 -3.3324 -3.6992 25 6 0.8226 -3.5408 -4.2310 26 6 -0.2963 -3.4101 -3.4298 27 6 -0.1564 -3.0722 -2.0967 28 1 -0.4850 0.8401 -0.0004 29 1 3.0482 -3.6438 0.2209 30 1 1.5377 -4.5549 0.4588 31 1 3.1458 -4.9251 2.5896 32 1 3.8439 -1.9894 4.0170 33 1 3.9205 -2.5804 5.6943 34 1 5.9530 -2.9964 4.5099 35 1 3.5804 -5.8760 4.6685 36 1 0.8863 -5.0028 6.0158 37 1 1.6430 -6.6832 6.0931 38 1 3.7070 -5.7030 7.1960 39 1 2.9510 -4.0226 7.1187 40 1 3.2045 -2.8243 -1.9526 41 1 2.9557 -3.4341 -4.3252 42 1 0.7132 -3.8051 -5.2724 43 1 -1.2799 -3.5725 -3.8453 44 1 -1.0306 -2.9697 -1.4709 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793763418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:15 Heat of formation + Delta-G solvation = -43.092370 kcal Electronic energy + Delta-G solvation = -24822.636403 eV Core-core repulsion = 21319.385677 eV Total energy + Delta-G solvation = -3503.250726 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.45067 -38.39005 -37.53157 -36.05093 -34.06840 -33.39368 -31.42656 -29.98602 -29.45259 -28.09021 -25.46135 -23.87529 -22.60515 -22.35113 -21.59246 -20.26876 -20.01940 -19.05019 -17.29266 -16.67619 -16.46769 -16.11566 -15.59777 -14.86499 -14.63674 -14.49682 -14.19509 -13.97236 -13.79783 -13.56648 -13.20665 -12.72915 -12.50399 -12.30410 -12.24303 -11.88703 -11.65903 -11.59724 -11.55461 -10.99344 -10.88479 -10.67626 -10.54783 -10.49511 -10.23842 -10.13039 -9.99368 -9.88521 -9.39858 -9.07049 -8.76541 -8.46213 -8.29560 -8.02151 -7.59190 -5.90078 -3.88739 2.31223 2.36889 3.37191 3.44207 3.46412 3.54884 3.61255 3.90139 4.41387 4.53314 4.63385 4.77459 4.85333 4.96617 5.23213 5.42501 5.45071 5.52700 5.57961 5.61895 5.68314 5.75602 5.78805 5.86061 5.90536 6.01060 6.03448 6.15965 6.23950 6.27017 6.33320 6.43796 6.57516 6.84442 6.94335 7.04037 7.07348 7.33359 7.48244 7.56799 7.69660 7.91917 7.97466 8.08666 8.21244 8.42667 9.10541 9.16753 9.71762 11.20166 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.004441 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.828097 B = 6303.280628 C = 7428.323948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.487 4.487 8 H 0.050 0.950 9 C 0.078 3.922 10 H 0.072 0.928 11 C -0.121 4.121 12 C 0.513 3.487 13 O -0.499 6.499 14 N -0.736 5.736 15 C 0.182 3.818 16 H 0.096 0.904 17 C 0.066 3.934 18 O -0.566 6.566 19 C -0.145 4.145 20 C -0.182 4.182 21 C -0.172 4.172 22 C -0.022 4.022 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.129 4.129 27 C -0.119 4.119 28 H 0.257 0.743 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.394 0.606 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.373 0.627 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -11.095 6.507 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.127 4.127 3 Si 0.712 3.288 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.525 4.525 8 H 0.068 0.932 9 C 0.059 3.941 10 H 0.091 0.909 11 C -0.161 4.161 12 C 0.300 3.700 13 O -0.370 6.370 14 N -0.390 5.390 15 C 0.077 3.923 16 H 0.114 0.886 17 C -0.014 4.014 18 O -0.371 6.371 19 C -0.164 4.164 20 C -0.219 4.219 21 C -0.209 4.209 22 C -0.023 4.023 23 C -0.132 4.132 24 C -0.151 4.151 25 C -0.174 4.174 26 C -0.147 4.147 27 C -0.137 4.137 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.228 0.772 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.219 0.781 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.976 -10.677 6.659 13.532 hybrid contribution 1.105 1.229 -0.107 1.656 sum 6.082 -9.448 6.552 13.007 Atomic orbital electron populations 1.69916 1.05853 1.26127 1.49923 1.24815 0.94654 0.98770 0.94471 0.86676 0.80184 0.84586 0.77324 1.19968 1.21218 1.21204 1.20707 0.92337 0.89632 1.49809 0.93176 1.17837 0.98792 0.91489 0.85937 0.90944 1.21757 1.02433 1.00640 0.91315 1.20918 0.77459 0.82735 0.88923 1.90757 1.43362 1.25112 1.77818 1.46123 1.58857 1.27813 1.06255 1.20389 0.97125 0.92930 0.81899 0.88590 1.22660 0.84559 0.95500 0.98634 1.86449 1.15549 1.43998 1.91089 1.22304 1.02142 0.99205 0.92741 1.23095 0.93110 1.01117 1.04560 1.22883 1.00969 1.02467 0.94605 1.20761 0.91712 0.90520 0.99277 1.20959 0.99032 1.00087 0.93165 1.20980 0.96531 1.01839 0.95712 1.20795 0.93121 1.04743 0.98714 1.20984 0.97568 1.01571 0.94565 1.21103 0.97742 1.00095 0.94792 0.93269 0.90558 0.91703 0.77228 0.92550 0.93635 0.78120 0.87348 0.88620 0.88868 0.88836 0.88884 0.86861 0.87674 0.87822 0.87656 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.04 12.85 55.43 0.71 -25.33 16 2 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 3 Si 0.88 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.49 -13.15 6.38 -34.44 -0.22 -13.37 16 8 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 9 C 0.08 1.89 1.68 -92.93 -0.16 1.73 16 10 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 11 C -0.12 -2.38 4.95 -27.88 -0.14 -2.52 16 12 C 0.51 10.30 7.54 -10.99 -0.08 10.22 16 13 O -0.50 -12.38 14.65 5.56 0.08 -12.30 16 14 N -0.74 -11.44 5.03 -53.80 -0.27 -11.71 16 15 C 0.18 2.58 2.60 -67.93 -0.18 2.41 16 16 H 0.10 1.53 7.34 -51.93 -0.38 1.15 16 17 C 0.07 0.89 6.61 37.16 0.25 1.14 16 18 O -0.57 -7.04 13.09 -35.23 -0.46 -7.50 16 19 C -0.15 -1.64 4.87 -90.61 -0.44 -2.08 16 20 C -0.18 -1.84 10.18 -26.69 -0.27 -2.12 16 21 C -0.17 -1.66 9.80 -26.69 -0.26 -1.92 16 22 C -0.02 -0.49 4.77 -104.63 -0.50 -0.99 16 23 C -0.11 -2.33 8.86 -39.58 -0.35 -2.68 16 24 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 25 C -0.16 -2.74 10.05 -39.58 -0.40 -3.13 16 26 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 27 C -0.12 -2.54 9.67 -39.58 -0.38 -2.92 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.08 1.40 7.76 -51.93 -0.40 1.00 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.39 5.20 8.55 -40.82 -0.35 4.85 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.53 7.48 -51.93 -0.39 0.14 16 34 H 0.37 3.18 9.12 45.56 0.42 3.59 16 35 H 0.11 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.80 8.14 -51.92 -0.42 0.37 16 39 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 40 H 0.11 2.23 7.75 -52.49 -0.41 1.83 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.11 2.45 7.95 -52.48 -0.42 2.04 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -32.77 369.53 -9.45 -42.22 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -6.03 Total: 11.63 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -4.02 Total: -19.79 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.44 Total: -37.04 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.38 Total: -19.80 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.77 -9.45 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793763418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.874 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds