Wall clock time and date at job start Tue Mar 31 2020 08:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48504 * 109.46972 * 270.00335 * 3 2 1 5 5 H 1.48501 * 109.46999 * 30.00001 * 3 2 1 6 6 H 1.48499 * 109.47276 * 149.99993 * 3 2 1 7 7 C 1.37880 * 120.00517 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99874 * 186.11857 * 7 2 1 9 9 C 1.50697 * 119.99634 * 6.11304 * 7 2 1 10 10 H 1.08997 * 109.47354 * 25.85429 * 9 7 2 11 11 C 1.52997 * 109.46886 * 145.85701 * 9 7 2 12 12 C 1.50704 * 109.47080 * 294.99850 * 11 9 7 13 13 O 1.21284 * 119.99811 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99818 * 180.02562 * 12 11 9 15 15 C 1.46501 * 119.99497 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47256 * 324.99340 * 15 14 12 17 17 C 1.53002 * 109.47024 * 204.99805 * 15 14 12 18 18 O 1.42905 * 109.46633 * 294.99746 * 17 15 14 19 19 C 1.53000 * 109.47207 * 84.99573 * 15 14 12 20 20 C 1.53000 * 117.50078 * 248.74122 * 19 15 14 21 21 C 1.53005 * 117.49616 * 180.08325 * 19 15 14 22 22 C 1.50704 * 109.47207 * 265.85349 * 9 7 2 23 23 C 1.38240 * 119.99976 * 303.46031 * 22 9 7 24 24 C 1.38235 * 119.99930 * 179.78627 * 23 22 9 25 25 C 1.38235 * 119.99687 * 0.44384 * 24 23 22 26 26 C 1.38232 * 120.00175 * 359.81072 * 25 24 23 27 27 C 1.38231 * 120.00176 * 359.97438 * 26 25 24 28 28 H 0.96994 * 120.00327 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47312 * 175.00150 * 11 9 7 30 30 H 1.08996 * 109.47462 * 54.99656 * 11 9 7 31 31 H 0.96992 * 120.00184 * 359.97438 * 14 12 11 32 32 H 1.09005 * 109.47326 * 175.00168 * 17 15 14 33 33 H 1.08994 * 109.47115 * 54.99607 * 17 15 14 34 34 H 0.96705 * 113.99487 * 179.97438 * 18 17 15 35 35 H 1.09000 * 115.55087 * 34.41721 * 19 15 14 36 36 H 1.08998 * 117.49637 * 0.02562 * 20 19 15 37 37 H 1.08999 * 117.49716 * 145.02176 * 20 19 15 38 38 H 1.09001 * 117.49612 * 214.97854 * 21 19 15 39 39 H 1.08998 * 117.49880 * 359.97438 * 21 19 15 40 40 H 1.08007 * 119.99882 * 359.97438 * 23 22 9 41 41 H 1.07995 * 119.99751 * 180.27331 * 24 23 22 42 42 H 1.08006 * 119.99585 * 179.83124 * 25 24 23 43 43 H 1.08001 * 119.99909 * 180.02562 * 26 25 24 44 44 H 1.07996 * 120.00376 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2576 -2.4953 -0.1401 10 1 0.3202 -2.3214 -0.6683 11 6 2.1105 -3.4908 -0.9290 12 6 2.2987 -2.9862 -2.3365 13 8 1.8001 -1.9337 -2.6751 14 7 3.0210 -3.7046 -3.2190 15 6 3.2043 -3.2137 -4.5871 16 1 2.3016 -2.6960 -4.9114 17 6 3.4780 -4.3948 -5.5204 18 8 4.7220 -5.0028 -5.1669 19 6 4.3892 -2.2466 -4.6274 20 6 4.0870 -0.7693 -4.8869 21 6 4.7436 -1.6195 -5.9774 22 6 0.9666 -3.0568 1.2279 23 6 2.0021 -3.2922 2.1130 24 6 1.7347 -3.8031 3.3693 25 6 0.4328 -4.0870 3.7372 26 6 -0.6020 -3.8565 2.8503 27 6 -0.3351 -3.3415 1.5955 28 1 -0.4850 0.8400 -0.0004 29 1 1.6096 -4.4586 -0.9540 30 1 3.0829 -3.5973 -0.4482 31 1 3.4200 -4.5461 -2.9481 32 1 3.5263 -4.0407 -6.5501 33 1 2.6759 -5.1266 -5.4250 34 1 4.9599 -5.7608 -5.7182 35 1 5.2106 -2.4808 -3.9502 36 1 3.0439 -0.4864 -5.0284 37 1 4.7096 -0.0318 -4.3805 38 1 5.7981 -1.4409 -6.1879 39 1 4.1329 -1.8963 -6.8367 40 1 3.0197 -3.0742 1.8239 41 1 2.5432 -3.9829 4.0623 42 1 0.2243 -4.4887 4.7179 43 1 -1.6192 -4.0780 3.1379 44 1 -1.1436 -3.1610 0.9027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793763421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:18 Heat of formation + Delta-G solvation = -42.203210 kcal Electronic energy + Delta-G solvation = -24972.042354 eV Core-core repulsion = 21468.830184 eV Total energy + Delta-G solvation = -3503.212170 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.41441 -38.36186 -37.44313 -36.11549 -34.03316 -33.39754 -31.40537 -29.96899 -29.48062 -28.17273 -25.44135 -23.65782 -22.62369 -22.02001 -21.58287 -20.34142 -19.86018 -19.15876 -17.45991 -16.55365 -16.30449 -16.18911 -15.64427 -14.93670 -14.71596 -14.43802 -14.16682 -13.88117 -13.83977 -13.48843 -13.15932 -12.56684 -12.51150 -12.28755 -12.07574 -11.84330 -11.75148 -11.55183 -11.30649 -11.12784 -10.81683 -10.62386 -10.52937 -10.25047 -10.20953 -10.15428 -10.00147 -9.74029 -9.38901 -8.99904 -8.77372 -8.44940 -8.27202 -8.00302 -7.55860 -5.88307 -3.86967 2.33101 2.39089 3.42113 3.47450 3.49613 3.59102 3.73636 4.08241 4.20830 4.56886 4.79729 4.81438 4.98875 5.18070 5.26759 5.31251 5.46153 5.50678 5.60453 5.69805 5.75162 5.77103 5.86822 5.90829 6.02225 6.16578 6.22152 6.28287 6.33304 6.35402 6.45467 6.51378 6.59201 6.86848 6.96163 7.06239 7.09763 7.35100 7.47517 7.49698 7.58158 7.91484 7.99873 8.10322 8.24269 8.44789 9.12582 9.20929 9.74725 11.22020 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004867 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.828080 B = 5751.838318 C = 7242.523750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.885 3.115 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.081 3.919 10 H 0.071 0.929 11 C -0.122 4.122 12 C 0.512 3.488 13 O -0.493 6.493 14 N -0.740 5.740 15 C 0.180 3.820 16 H 0.095 0.905 17 C 0.073 3.927 18 O -0.564 6.564 19 C -0.145 4.145 20 C -0.168 4.168 21 C -0.182 4.182 22 C -0.020 4.020 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.119 4.119 28 H 0.258 0.742 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.396 0.604 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.375 0.625 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -11.305 -8.005 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.713 3.287 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.526 4.526 8 H 0.068 0.932 9 C 0.062 3.938 10 H 0.090 0.910 11 C -0.162 4.162 12 C 0.299 3.701 13 O -0.364 6.364 14 N -0.395 5.395 15 C 0.075 3.925 16 H 0.113 0.887 17 C -0.006 4.006 18 O -0.369 6.369 19 C -0.165 4.165 20 C -0.205 4.205 21 C -0.220 4.220 22 C -0.021 4.021 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.175 4.175 26 C -0.147 4.147 27 C -0.137 4.137 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.229 0.771 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.221 0.779 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.470 -9.886 -7.783 13.720 hybrid contribution 0.730 0.294 -0.169 0.805 sum 6.200 -9.592 -7.952 13.917 Atomic orbital electron populations 1.69910 1.05909 1.26294 1.49851 1.24784 0.94613 0.98736 0.94228 0.86722 0.79840 0.84122 0.77999 1.20622 1.21603 1.20196 1.20670 0.92371 0.89591 1.49948 0.93223 1.17828 0.97528 0.91432 0.87060 0.91048 1.21787 1.02244 0.99831 0.92386 1.20905 0.77561 0.84437 0.87228 1.90746 1.46456 1.21041 1.78136 1.46165 1.56397 1.25936 1.11041 1.20415 0.96874 0.92229 0.83008 0.88688 1.22478 0.85899 0.94590 0.97595 1.86544 1.39317 1.49723 1.61323 1.22504 1.00258 0.94602 0.99115 1.22978 1.01948 0.93856 1.01688 1.22891 1.00910 1.05704 0.92492 1.20752 0.91921 0.90286 0.99103 1.20953 0.99418 0.99528 0.93443 1.20970 0.96054 1.01284 0.96688 1.20786 0.93356 1.04347 0.98974 1.20976 0.97938 1.01030 0.94707 1.21082 0.97089 0.99377 0.96173 0.93228 0.91831 0.90636 0.77058 0.92688 0.93152 0.77862 0.87847 0.88388 0.89239 0.89312 0.89407 0.86931 0.87712 0.87852 0.87690 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.17 12.87 55.43 0.71 -25.46 16 2 C 0.08 2.27 5.45 -17.82 -0.10 2.17 16 3 Si 0.88 22.61 29.54 -169.99 -5.02 17.58 16 4 H -0.28 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.49 -13.27 6.37 -34.44 -0.22 -13.48 16 8 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 9 C 0.08 1.94 1.67 -92.92 -0.16 1.79 16 10 H 0.07 1.97 6.98 -51.93 -0.36 1.61 16 11 C -0.12 -2.40 4.95 -27.88 -0.14 -2.54 16 12 C 0.51 10.28 7.54 -10.98 -0.08 10.20 16 13 O -0.49 -12.17 14.65 5.55 0.08 -12.09 16 14 N -0.74 -11.46 5.06 -53.80 -0.27 -11.73 16 15 C 0.18 2.54 2.60 -67.93 -0.18 2.36 16 16 H 0.10 1.50 7.34 -51.93 -0.38 1.12 16 17 C 0.07 0.73 6.56 37.16 0.24 0.97 16 18 O -0.56 -5.42 12.88 -35.23 -0.45 -5.88 16 19 C -0.15 -2.13 4.94 -90.62 -0.45 -2.58 16 20 C -0.17 -2.60 10.18 -26.69 -0.27 -2.88 16 21 C -0.18 -2.23 9.80 -26.69 -0.26 -2.49 16 22 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 23 C -0.12 -2.37 8.86 -39.58 -0.35 -2.72 16 24 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 25 C -0.16 -2.77 10.05 -39.58 -0.40 -3.17 16 26 C -0.13 -2.41 10.05 -39.59 -0.40 -2.80 16 27 C -0.12 -2.55 9.67 -39.59 -0.38 -2.93 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.40 7.77 -51.93 -0.40 0.99 16 31 H 0.40 5.22 8.38 -40.82 -0.34 4.88 16 32 H 0.05 0.47 7.48 -51.93 -0.39 0.08 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.38 1.85 9.12 45.56 0.42 2.27 16 35 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.10 1.65 8.05 -51.93 -0.42 1.23 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 40 H 0.11 2.25 7.76 -52.48 -0.41 1.84 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.10 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.11 2.44 7.95 -52.49 -0.42 2.02 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -33.10 369.32 -9.45 -42.55 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.03 Total: 11.32 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -4.03 Total: -21.86 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.44 Total: -37.19 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.37 Total: -17.96 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.10 -9.45 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793763421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.347 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds