Wall clock time and date at job start Tue Mar 31 2020 08:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48504 * 109.46972 * 270.00335 * 3 2 1 5 5 H 1.48501 * 109.46999 * 30.00001 * 3 2 1 6 6 H 1.48499 * 109.47276 * 149.99993 * 3 2 1 7 7 C 1.37880 * 120.00517 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99874 * 186.11857 * 7 2 1 9 9 C 1.50697 * 119.99634 * 6.11304 * 7 2 1 10 10 H 1.08997 * 109.47354 * 25.85429 * 9 7 2 11 11 C 1.52997 * 109.46886 * 145.85701 * 9 7 2 12 12 C 1.50704 * 109.47080 * 294.99850 * 11 9 7 13 13 O 1.21284 * 119.99811 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99818 * 180.02562 * 12 11 9 15 15 C 1.46501 * 119.99497 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47256 * 324.99340 * 15 14 12 17 17 C 1.53002 * 109.47024 * 204.99805 * 15 14 12 18 18 O 1.42905 * 109.46633 * 294.99746 * 17 15 14 19 19 C 1.53000 * 109.47207 * 84.99573 * 15 14 12 20 20 C 1.53000 * 117.50078 * 248.74122 * 19 15 14 21 21 C 1.53005 * 117.49616 * 180.08325 * 19 15 14 22 22 C 1.50704 * 109.47207 * 265.85349 * 9 7 2 23 23 C 1.38240 * 119.99976 * 303.46031 * 22 9 7 24 24 C 1.38235 * 119.99930 * 179.78627 * 23 22 9 25 25 C 1.38235 * 119.99687 * 0.44384 * 24 23 22 26 26 C 1.38232 * 120.00175 * 359.81072 * 25 24 23 27 27 C 1.38231 * 120.00176 * 359.97438 * 26 25 24 28 28 H 0.96994 * 120.00327 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47312 * 175.00150 * 11 9 7 30 30 H 1.08996 * 109.47462 * 54.99656 * 11 9 7 31 31 H 0.96992 * 120.00184 * 359.97438 * 14 12 11 32 32 H 1.09005 * 109.47326 * 175.00168 * 17 15 14 33 33 H 1.08994 * 109.47115 * 54.99607 * 17 15 14 34 34 H 0.96705 * 113.99487 * 179.97438 * 18 17 15 35 35 H 1.09000 * 115.55087 * 34.41721 * 19 15 14 36 36 H 1.08998 * 117.49637 * 0.02562 * 20 19 15 37 37 H 1.08999 * 117.49716 * 145.02176 * 20 19 15 38 38 H 1.09001 * 117.49612 * 214.97854 * 21 19 15 39 39 H 1.08998 * 117.49880 * 359.97438 * 21 19 15 40 40 H 1.08007 * 119.99882 * 359.97438 * 23 22 9 41 41 H 1.07995 * 119.99751 * 180.27331 * 24 23 22 42 42 H 1.08006 * 119.99585 * 179.83124 * 25 24 23 43 43 H 1.08001 * 119.99909 * 180.02562 * 26 25 24 44 44 H 1.07996 * 120.00376 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2576 -2.4953 -0.1401 10 1 0.3202 -2.3214 -0.6683 11 6 2.1105 -3.4908 -0.9290 12 6 2.2987 -2.9862 -2.3365 13 8 1.8001 -1.9337 -2.6751 14 7 3.0210 -3.7046 -3.2190 15 6 3.2043 -3.2137 -4.5871 16 1 2.3016 -2.6960 -4.9114 17 6 3.4780 -4.3948 -5.5204 18 8 4.7220 -5.0028 -5.1669 19 6 4.3892 -2.2466 -4.6274 20 6 4.0870 -0.7693 -4.8869 21 6 4.7436 -1.6195 -5.9774 22 6 0.9666 -3.0568 1.2279 23 6 2.0021 -3.2922 2.1130 24 6 1.7347 -3.8031 3.3693 25 6 0.4328 -4.0870 3.7372 26 6 -0.6020 -3.8565 2.8503 27 6 -0.3351 -3.3415 1.5955 28 1 -0.4850 0.8400 -0.0004 29 1 1.6096 -4.4586 -0.9540 30 1 3.0829 -3.5973 -0.4482 31 1 3.4200 -4.5461 -2.9481 32 1 3.5263 -4.0407 -6.5501 33 1 2.6759 -5.1266 -5.4250 34 1 4.9599 -5.7608 -5.7182 35 1 5.2106 -2.4808 -3.9502 36 1 3.0439 -0.4864 -5.0284 37 1 4.7096 -0.0318 -4.3805 38 1 5.7981 -1.4409 -6.1879 39 1 4.1329 -1.8963 -6.8367 40 1 3.0197 -3.0742 1.8239 41 1 2.5432 -3.9829 4.0623 42 1 0.2243 -4.4887 4.7179 43 1 -1.6192 -4.0780 3.1379 44 1 -1.1436 -3.1610 0.9027 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793763421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:18 Heat of formation + Delta-G solvation = -64.718261 kcal Electronic energy + Delta-G solvation = -24973.018680 eV Core-core repulsion = 21468.830184 eV Total energy + Delta-G solvation = -3504.188495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84821 -39.84641 -38.74657 -37.00045 -35.80646 -34.83671 -33.38854 -31.49353 -30.84354 -29.53066 -27.33244 -24.89627 -24.17344 -23.16880 -23.12216 -21.81459 -21.07036 -20.81233 -18.50748 -18.28788 -17.83051 -17.48692 -17.09813 -16.48061 -16.20147 -15.78012 -15.69764 -15.43605 -15.24793 -14.78060 -14.49190 -14.21919 -13.97757 -13.68865 -13.56728 -13.50686 -13.17880 -12.98332 -12.88092 -12.55323 -12.47921 -12.44421 -12.19607 -11.81980 -11.68827 -11.39276 -11.29839 -10.96197 -10.93465 -10.81766 -10.58142 -10.27871 -9.84311 -9.53204 -9.17643 -8.04170 -6.05508 0.78909 0.85408 1.32801 1.38181 1.42127 2.03905 2.41050 2.45643 2.93988 3.19686 3.36753 3.44516 3.73446 3.93879 4.11830 4.24127 4.27114 4.32347 4.35878 4.37350 4.43040 4.56538 4.59166 4.64511 4.67118 4.76064 4.77403 4.93032 4.94293 5.00942 5.02255 5.21526 5.23301 5.32783 5.39130 5.54262 5.64971 5.75855 5.80169 5.84731 5.96896 6.18836 6.43338 6.48008 6.87080 7.00980 7.01913 7.56848 7.68970 9.05668 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004867 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.828080 B = 5751.838318 C = 7242.523750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.480 4.480 8 H 0.043 0.957 9 C 0.084 3.916 10 H 0.025 0.975 11 C -0.116 4.116 12 C 0.510 3.490 13 O -0.549 6.549 14 N -0.720 5.720 15 C 0.173 3.827 16 H 0.073 0.927 17 C 0.085 3.915 18 O -0.579 6.579 19 C -0.153 4.153 20 C -0.201 4.201 21 C -0.141 4.141 22 C -0.045 4.045 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.148 4.148 26 C -0.128 4.128 27 C -0.143 4.143 28 H 0.253 0.747 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.411 0.589 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.132 0.868 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -13.804 -7.454 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.518 4.518 8 H 0.061 0.939 9 C 0.065 3.935 10 H 0.043 0.957 11 C -0.157 4.157 12 C 0.297 3.703 13 O -0.425 6.425 14 N -0.375 5.375 15 C 0.068 3.932 16 H 0.091 0.909 17 C 0.007 3.993 18 O -0.387 6.387 19 C -0.173 4.173 20 C -0.238 4.238 21 C -0.179 4.179 22 C -0.045 4.045 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.166 4.166 26 C -0.146 4.146 27 C -0.161 4.161 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.247 0.753 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.150 0.850 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.303 -12.450 -7.248 16.152 hybrid contribution 0.214 0.942 -0.320 1.017 sum 7.517 -11.508 -7.568 15.691 Atomic orbital electron populations 1.70040 1.06995 1.26255 1.52340 1.25418 0.95269 1.01461 0.95082 0.85989 0.79361 0.81494 0.77372 1.21657 1.21165 1.19004 1.20936 0.92053 0.91084 1.47744 0.93899 1.17601 0.95648 0.91670 0.88563 0.95711 1.21667 1.02388 0.99738 0.91864 1.21012 0.77452 0.83933 0.87901 1.90734 1.49029 1.23579 1.79143 1.45935 1.54639 1.25672 1.11228 1.20589 0.95857 0.94151 0.82653 0.90923 1.22289 0.86700 0.93229 0.97083 1.86480 1.38824 1.50993 1.62397 1.22481 1.00084 0.93677 1.01016 1.22910 1.00929 0.94700 1.05239 1.22985 1.01884 1.01388 0.91596 1.20568 0.93107 0.92440 0.98411 1.21030 0.98828 1.00379 0.94419 1.21362 0.97594 0.99497 0.95980 1.21261 0.92577 1.02573 1.00167 1.21286 0.99965 0.99818 0.93510 1.21097 0.96320 1.01143 0.97571 0.93819 0.89195 0.89116 0.75332 0.90422 0.91828 0.75175 0.88939 0.90736 0.90381 0.87457 0.87183 0.86905 0.84217 0.83839 0.84992 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.31 12.87 21.45 0.28 -57.04 16 2 C 0.03 1.56 5.45 84.66 0.46 2.02 16 3 Si 0.93 48.05 29.54 68.60 2.03 50.08 16 4 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 5 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.48 -27.09 6.37 25.60 0.16 -26.92 16 8 H 0.04 2.41 7.82 -2.91 -0.02 2.39 16 9 C 0.08 4.24 1.67 -12.29 -0.02 4.22 16 10 H 0.02 1.46 6.98 -2.39 -0.02 1.44 16 11 C -0.12 -4.65 4.95 29.85 0.15 -4.50 16 12 C 0.51 21.12 7.54 87.66 0.66 21.78 16 13 O -0.55 -28.81 14.65 -3.04 -0.04 -28.85 16 14 N -0.72 -22.13 5.06 -442.52 -2.24 -24.37 16 15 C 0.17 4.78 2.60 44.99 0.12 4.90 16 16 H 0.07 2.37 7.34 -2.39 -0.02 2.35 16 17 C 0.09 1.47 6.56 71.98 0.47 1.95 16 18 O -0.58 -9.23 12.88 -148.98 -1.92 -11.15 16 19 C -0.15 -4.44 4.94 -10.79 -0.05 -4.49 16 20 C -0.20 -6.48 10.18 30.62 0.31 -6.16 16 21 C -0.14 -3.20 9.80 30.62 0.30 -2.90 16 22 C -0.04 -2.04 4.77 -19.86 -0.09 -2.13 16 23 C -0.13 -5.14 8.86 22.27 0.20 -4.94 16 24 C -0.13 -4.21 10.05 22.27 0.22 -3.98 16 25 C -0.15 -4.67 10.05 22.27 0.22 -4.45 16 26 C -0.13 -4.54 10.05 22.27 0.22 -4.32 16 27 C -0.14 -6.23 9.67 22.27 0.22 -6.01 16 28 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.09 3.32 7.77 -2.39 -0.02 3.30 16 31 H 0.41 10.22 8.38 -92.71 -0.78 9.44 16 32 H 0.08 1.03 7.48 -2.38 -0.02 1.02 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.40 2.40 9.12 -74.05 -0.68 1.73 16 35 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.07 2.73 8.05 -2.39 -0.02 2.71 16 37 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.11 2.03 7.66 -2.39 -0.02 2.01 16 40 H 0.11 4.40 7.76 -2.91 -0.02 4.38 16 41 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.09 4.33 7.95 -2.91 -0.02 4.30 16 Total: -1.00 -77.07 369.32 1.20 -75.87 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.45 Total: 31.41 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 3.55 Total: -35.95 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -1.96 Total: -81.41 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.96 Total: -40.00 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -77.07 1.20 -75.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793763421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.147 kcal (2) G-P(sol) polarization free energy of solvation -77.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds