Wall clock time and date at job start Tue Mar 31 2020 08:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00619 * 2 1 4 4 H 1.48499 * 109.47232 * 239.99697 * 3 2 1 5 5 H 1.48503 * 109.46587 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47312 * 119.99272 * 3 2 1 7 7 C 1.37876 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00321 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47311 * 179.97438 * 9 7 2 11 11 O 1.45204 * 109.47218 * 179.97438 * 10 9 7 12 12 C 1.34713 * 117.00129 * 180.02562 * 11 10 9 13 13 O 1.21472 * 119.99976 * 0.02562 * 12 11 10 14 14 C 1.47723 * 120.00040 * 180.02562 * 12 11 10 15 15 C 1.39628 * 120.14820 * 179.97438 * 14 12 11 16 16 C 1.37949 * 119.84766 * 180.02562 * 15 14 12 17 17 C 1.38372 * 120.14449 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.84236 * 179.97438 * 17 16 15 19 19 N 1.46905 * 109.47059 * 89.99905 * 18 17 16 20 20 C 1.48560 * 110.99577 * 189.99748 * 19 18 17 21 21 C 1.54378 * 104.69549 * 200.89794 * 20 19 18 22 22 C 1.54571 * 104.91190 * 23.88545 * 21 20 19 23 23 C 1.48555 * 110.99889 * 74.58229 * 19 18 17 24 24 C 1.38362 * 120.30976 * 0.27175 * 17 16 15 25 25 C 1.37949 * 120.14480 * 359.45331 * 24 17 16 26 26 H 0.97003 * 119.99675 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46710 * 60.00068 * 9 7 2 28 28 H 1.09001 * 109.47073 * 300.00124 * 9 7 2 29 29 H 1.09001 * 109.47317 * 60.00510 * 10 9 7 30 30 H 1.09001 * 109.47536 * 300.00309 * 10 9 7 31 31 H 1.07996 * 120.07717 * 359.97438 * 15 14 12 32 32 H 1.07993 * 119.92604 * 180.02562 * 16 15 14 33 33 H 1.08998 * 109.47305 * 329.99887 * 18 17 16 34 34 H 1.08997 * 109.46731 * 209.99985 * 18 17 16 35 35 H 1.09002 * 110.41441 * 319.73871 * 20 19 18 36 36 H 1.09002 * 110.41248 * 82.06172 * 20 19 18 37 37 H 1.09006 * 110.32557 * 142.80924 * 21 20 19 38 38 H 1.08996 * 110.32821 * 265.02105 * 21 20 19 39 39 H 1.08995 * 110.29758 * 241.08109 * 22 21 20 40 40 H 1.09004 * 110.32005 * 118.89089 * 22 21 20 41 41 H 1.09005 * 110.41154 * 277.81401 * 23 19 18 42 42 H 1.08998 * 110.41848 * 40.13562 * 23 19 18 43 43 H 1.07994 * 119.92817 * 179.73217 * 24 17 16 44 44 H 1.07998 * 120.07553 * 180.27633 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 8 1.5190 -4.9196 0.0011 12 6 2.2526 -6.0494 0.0018 13 8 3.4657 -5.9859 0.0023 14 6 1.5819 -7.3656 0.0018 15 6 2.3393 -8.5387 0.0019 16 6 1.7065 -9.7645 0.0015 17 6 0.3245 -9.8330 0.0004 18 6 -0.3597 -11.1758 -0.0007 19 7 -0.5831 -11.6127 1.3840 20 6 -1.0338 -13.0275 1.4296 21 6 -1.7244 -13.1745 2.8025 22 6 -2.1619 -11.7417 3.1831 23 6 -1.6976 -10.8543 2.0082 24 6 -0.4321 -8.6746 -0.0059 25 6 0.1877 -7.4423 0.0002 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8903 29 1 2.8717 -3.6045 0.8906 30 1 2.8718 -3.6044 -0.8894 31 1 3.4180 -8.4864 0.0015 32 1 2.2910 -10.6725 0.0020 33 1 0.2686 -11.9034 -0.5144 34 1 -1.3172 -11.0952 -0.5153 35 1 -1.7413 -13.2273 0.6248 36 1 -0.1797 -13.7011 1.3596 37 1 -2.5928 -13.8284 2.7214 38 1 -1.0227 -13.5652 3.5393 39 1 -1.6754 -11.4309 4.1076 40 1 -3.2456 -11.6925 3.2894 41 1 -1.3430 -9.8915 2.3762 42 1 -2.5081 -10.7121 1.2934 43 1 -1.5104 -8.7354 -0.0111 44 1 -0.4040 -6.5388 -0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801869084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:19 Heat of formation + Delta-G solvation = -70.117580 kcal Electronic energy + Delta-G solvation = -23359.008423 eV Core-core repulsion = 19854.585795 eV Total energy + Delta-G solvation = -3504.422628 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.30631 -39.50438 -38.33326 -36.03303 -33.67240 -33.30909 -31.17488 -30.82237 -30.05871 -29.17064 -26.52129 -24.94644 -22.94099 -22.78636 -21.41079 -21.08053 -20.91663 -20.32928 -17.79948 -16.74271 -16.44968 -16.32005 -16.06562 -15.87197 -15.45704 -15.13137 -14.61417 -14.37476 -14.21696 -13.68053 -13.47187 -13.43340 -13.08723 -12.94219 -12.56067 -12.35133 -12.28887 -11.92308 -11.64964 -11.57089 -11.39751 -11.21844 -11.14164 -11.00750 -10.87861 -10.73033 -10.70184 -10.24980 -9.63788 -9.61859 -9.31002 -9.10522 -9.03816 -8.79183 -8.43498 -6.09907 -4.14178 0.68323 1.29477 2.73089 3.16917 3.30781 3.34616 3.38896 3.57456 3.91006 4.24869 4.27382 4.39646 4.52783 4.60133 4.69633 4.85647 4.88408 4.91254 5.11157 5.15634 5.19570 5.26617 5.26761 5.33207 5.38009 5.44767 5.49710 5.63357 5.70818 5.72701 5.78654 5.90735 6.08359 6.10816 6.19617 6.32067 6.33835 6.48076 6.57998 6.64640 6.76299 6.97299 7.56053 7.62849 7.87195 8.19225 8.27025 8.91025 9.50047 11.01589 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.002245 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.001731 B =12467.357379 C =13158.901772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.352 6.352 12 C 0.499 3.501 13 O -0.516 6.516 14 C -0.117 4.117 15 C -0.058 4.058 16 C -0.113 4.113 17 C -0.051 4.051 18 C 0.080 3.920 19 N -0.506 5.506 20 C 0.031 3.969 21 C -0.124 4.124 22 C -0.126 4.126 23 C 0.030 3.970 24 C -0.128 4.128 25 C -0.060 4.060 26 H 0.264 0.736 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.125 0.875 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.150 -28.074 2.113 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.268 6.268 12 C 0.344 3.656 13 O -0.407 6.407 14 C -0.118 4.118 15 C -0.076 4.076 16 C -0.132 4.132 17 C -0.051 4.051 18 C -0.047 4.047 19 N -0.229 5.229 20 C -0.097 4.097 21 C -0.162 4.162 22 C -0.164 4.164 23 C -0.098 4.098 24 C -0.146 4.146 25 C -0.078 4.078 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.143 0.857 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.455 -27.801 2.383 28.256 hybrid contribution -0.172 0.965 -0.485 1.094 sum -4.627 -26.836 1.898 27.298 Atomic orbital electron populations 1.69965 1.06083 1.27085 1.49737 1.24983 0.94933 0.99385 0.94869 0.86522 0.79474 0.82442 0.78793 1.20068 1.21133 1.20053 1.20946 0.93165 0.90115 1.52260 0.92283 1.19165 0.94184 0.88984 0.98868 1.23671 0.96420 0.78555 1.01044 1.86566 1.41987 1.15631 1.82659 1.21162 0.85681 0.85603 0.73131 1.90786 1.15119 1.88391 1.46359 1.19310 0.94029 0.90826 1.07655 1.21276 1.00672 0.90733 0.94958 1.20892 0.93757 0.97367 1.01171 1.19885 0.93837 0.94327 0.97076 1.21246 0.99480 0.94038 0.89966 1.65417 1.38917 1.02659 1.15953 1.23128 0.98953 0.90567 0.97071 1.22339 1.00095 0.97081 0.96734 1.22354 1.00721 0.94587 0.98731 1.23206 0.92090 0.98448 0.96069 1.21008 0.99907 0.91658 1.02050 1.21551 0.93457 0.98688 0.94073 0.92664 0.95343 0.95326 0.92222 0.92219 0.84555 0.85264 0.89613 0.93237 0.93801 0.90009 0.91361 0.90939 0.90878 0.91308 0.89671 0.93665 0.85663 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.66 5.35 -27.89 -0.15 0.51 16 10 C 0.08 1.72 5.41 37.15 0.20 1.93 16 11 O -0.35 -7.30 9.47 -40.53 -0.38 -7.68 16 12 C 0.50 9.45 7.90 34.61 0.27 9.72 16 13 O -0.52 -10.81 16.14 -19.24 -0.31 -11.12 16 14 C -0.12 -1.76 5.87 -104.98 -0.62 -2.38 16 15 C -0.06 -0.75 9.60 -39.17 -0.38 -1.13 16 16 C -0.11 -1.19 9.68 -39.64 -0.38 -1.57 16 17 C -0.05 -0.50 5.20 -104.52 -0.54 -1.04 16 18 C 0.08 0.62 4.98 -4.97 -0.02 0.60 16 19 N -0.51 -4.13 5.33 -231.41 -1.23 -5.36 16 20 C 0.03 0.19 6.45 -2.18 -0.01 0.18 16 21 C -0.12 -0.72 7.02 -25.18 -0.18 -0.90 16 22 C -0.13 -0.82 7.01 -25.18 -0.18 -1.00 16 23 C 0.03 0.23 5.70 -2.19 -0.01 0.22 16 24 C -0.13 -1.35 8.93 -39.64 -0.35 -1.70 16 25 C -0.06 -0.78 9.62 -39.17 -0.38 -1.16 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.14 1.72 7.65 -52.49 -0.40 1.31 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.09 0.57 8.02 -51.93 -0.42 0.15 16 34 H 0.05 0.35 7.70 -51.93 -0.40 -0.05 16 35 H 0.04 0.25 8.00 -51.93 -0.42 -0.16 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.76 7.90 -51.93 -0.41 0.35 16 42 H 0.05 0.32 7.75 -51.93 -0.40 -0.08 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.14 1.87 7.61 -52.49 -0.40 1.47 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -31.70 368.43 -10.84 -42.54 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -7.04 Total: -3.37 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -3.14 Total: -11.35 kcal Atomic # 7 Polarization: -30.60 SS G_CDS: -0.50 Total: -31.09 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.69 Total: -18.81 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.70 -10.84 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801869084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.580 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds