Wall clock time and date at job start Tue Mar 31 2020 08:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99959 * 2 1 4 4 H 1.48500 * 109.46964 * 269.99666 * 3 2 1 5 5 H 1.48501 * 109.46927 * 29.99707 * 3 2 1 6 6 H 1.48500 * 109.46639 * 149.99739 * 3 2 1 7 7 C 1.37876 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47269 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46985 * 179.97438 * 10 9 7 12 12 O 1.45208 * 109.46807 * 179.97438 * 11 10 9 13 13 C 1.34226 * 117.00039 * 179.97438 * 12 11 10 14 14 O 1.20833 * 119.99725 * 0.02562 * 13 12 11 15 15 C 1.50692 * 120.00283 * 180.02562 * 13 12 11 16 16 C 1.50702 * 110.02009 * 59.29812 * 15 13 12 17 17 C 1.38671 * 120.41367 * 5.92078 * 16 15 13 18 18 C 1.38632 * 118.41842 * 179.78331 * 17 16 15 19 19 C 1.38227 * 119.15957 * 0.47131 * 18 17 16 20 20 N 1.31852 * 120.76358 * 359.77273 * 19 18 17 21 21 C 1.31885 * 121.72760 * 0.02562 * 20 19 18 22 22 C 1.53883 * 110.02972 * 297.90783 * 15 13 12 23 23 C 1.54368 * 106.54585 * 240.72702 * 22 15 13 24 24 C 1.54900 * 104.21774 * 23.57441 * 23 22 15 25 25 C 1.54265 * 110.03638 * 180.69037 * 15 13 12 26 26 H 0.96998 * 120.00129 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47656 * 59.99624 * 9 7 2 28 28 H 1.09004 * 109.46968 * 299.99864 * 9 7 2 29 29 H 1.08995 * 109.47198 * 59.99209 * 10 9 7 30 30 H 1.09004 * 109.46676 * 299.99266 * 10 9 7 31 31 H 1.08994 * 109.46927 * 299.99359 * 11 10 9 32 32 H 1.08998 * 109.47276 * 60.00088 * 11 10 9 33 33 H 1.07996 * 120.79390 * 0.02898 * 17 16 15 34 34 H 1.07998 * 120.42022 * 180.26888 * 18 17 16 35 35 H 1.08003 * 119.61758 * 179.79215 * 19 18 17 36 36 H 1.08004 * 119.61953 * 180.02562 * 21 20 19 37 37 H 1.08996 * 110.03258 * 0.02562 * 22 15 13 38 38 H 1.09007 * 110.03126 * 121.43193 * 22 15 13 39 39 H 1.08997 * 110.46453 * 264.89802 * 23 22 15 40 40 H 1.08995 * 110.60547 * 142.31952 * 23 22 15 41 41 H 1.08998 * 110.75617 * 203.76058 * 24 23 22 42 42 H 1.09004 * 110.90964 * 80.45894 * 24 23 22 43 43 H 1.08996 * 110.49121 * 214.34922 * 25 15 13 44 44 H 1.09000 * 110.48396 * 336.86839 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 8 6.0355 -4.0056 0.0014 13 6 7.3662 -4.1815 0.0009 14 8 8.1022 -3.2232 0.0006 15 6 7.9422 -5.5740 0.0008 16 6 7.4709 -6.3272 -1.2164 17 6 6.7298 -5.6842 -2.1965 18 6 6.3215 -6.4157 -3.3011 19 6 6.6557 -7.7544 -3.3835 20 7 7.3576 -8.3342 -2.4297 21 6 7.7662 -7.6686 -1.3670 22 6 7.5189 -6.3196 1.2786 23 6 8.8192 -6.6804 2.0283 24 6 9.8532 -5.6474 1.5154 25 6 9.4833 -5.5085 0.0176 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6801 0.8910 28 1 3.8752 -0.6805 -0.8889 29 1 3.6584 -3.1503 -0.8891 30 1 3.6579 -3.1506 0.8908 31 1 5.9147 -2.1228 -0.8890 32 1 5.9149 -2.1228 0.8909 33 1 6.4802 -4.6377 -2.1034 34 1 5.7466 -5.9463 -4.0857 35 1 6.3385 -8.3320 -4.2391 36 1 8.3397 -8.1775 -0.6063 37 1 6.8964 -5.6744 1.8986 38 1 6.9732 -7.2267 1.0183 39 1 9.1351 -7.6930 1.7776 40 1 8.6817 -6.5801 3.1049 41 1 10.8683 -6.0278 1.6290 42 1 9.7394 -4.6940 2.0314 43 1 9.9066 -6.3318 -0.5577 44 1 9.8288 -4.5523 -0.3755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808566903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:41 Heat of formation + Delta-G solvation = -73.946542 kcal Electronic energy + Delta-G solvation = -24765.847194 eV Core-core repulsion = 21261.258531 eV Total energy + Delta-G solvation = -3504.588664 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.50558 -39.94099 -38.09456 -36.44194 -34.16697 -33.13925 -31.95165 -31.81535 -29.09869 -28.81074 -27.51729 -24.49671 -23.38140 -23.17865 -22.02736 -20.99752 -20.41526 -19.50123 -18.08905 -17.28240 -17.07889 -16.61081 -16.31227 -15.81730 -15.78830 -15.22701 -14.35231 -14.27882 -14.17549 -14.07357 -13.61726 -13.29886 -13.16804 -12.79677 -12.72100 -12.45756 -12.10361 -11.89355 -11.76239 -11.48237 -11.39277 -11.25305 -11.09619 -11.01827 -10.94268 -10.56206 -10.50169 -10.06749 -9.97589 -9.88066 -9.77995 -9.62329 -9.29261 -9.17597 -8.60459 -6.10573 -4.09919 0.83411 1.06891 2.11771 2.64138 3.26523 3.34477 3.37402 3.52755 3.99585 4.14229 4.24945 4.34646 4.39387 4.65419 4.69744 4.72321 4.81476 4.98392 5.08910 5.10674 5.18324 5.22439 5.29677 5.32740 5.36951 5.39968 5.48455 5.59460 5.61740 5.69797 5.78271 5.80911 5.89419 5.94540 5.99690 6.03042 6.28122 6.32107 6.43849 6.58623 6.73450 7.15591 7.26969 7.67264 7.71652 7.76643 8.45820 8.93544 9.50769 11.02579 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.003411 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.622892 B = 8206.952042 C = 9185.698185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.101 4.101 11 C 0.063 3.937 12 O -0.351 6.351 13 C 0.470 3.530 14 O -0.503 6.503 15 C -0.009 4.009 16 C -0.122 4.122 17 C -0.063 4.063 18 C -0.163 4.163 19 C 0.095 3.905 20 N -0.483 5.483 21 C 0.110 3.890 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.109 4.109 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.877 -15.845 -1.288 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.010 4.010 12 O -0.267 6.267 13 C 0.312 3.688 14 O -0.391 6.391 15 C -0.011 4.011 16 C -0.124 4.124 17 C -0.089 4.089 18 C -0.183 4.183 19 C -0.061 4.061 20 N -0.191 5.191 21 C -0.048 4.048 22 C -0.149 4.149 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.032 0.968 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.094 -16.293 -1.374 25.906 hybrid contribution -0.047 2.166 -0.006 2.167 sum 20.047 -14.127 -1.380 24.563 Atomic orbital electron populations 1.69906 1.06281 1.27013 1.50735 1.25013 0.94751 0.99160 0.94428 0.86792 0.80378 0.83615 0.78612 1.20188 1.21226 1.19002 1.21041 0.88998 0.94674 1.51328 0.90803 1.19519 0.97580 0.91003 0.96652 1.21557 0.88595 1.00822 1.02852 1.23547 0.97222 0.78103 1.02150 1.86567 1.23029 1.34180 1.82930 1.23213 0.81535 0.91669 0.72370 1.90646 1.60664 1.42683 1.45100 1.20093 0.96968 0.88881 0.95137 1.20451 1.00311 0.95732 0.95932 1.21685 0.93854 1.00821 0.92553 1.22191 1.01263 0.95793 0.99069 1.22807 0.93878 0.92506 0.96941 1.67729 1.10547 1.39087 1.01722 1.22488 0.96791 0.90233 0.95251 1.22344 0.98583 1.00596 0.93415 1.22443 0.94275 0.99367 1.00173 1.22532 0.99106 0.99686 0.94941 1.22538 0.90002 1.04061 0.98025 0.92607 0.96289 0.96762 0.91577 0.91474 0.91545 0.91428 0.84791 0.84325 0.82558 0.82649 0.90258 0.89856 0.90991 0.90877 0.90773 0.90961 0.90101 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.10 -1.95 5.53 -26.73 -0.15 -2.10 16 11 C 0.06 1.06 5.47 37.16 0.20 1.26 16 12 O -0.35 -5.41 8.65 -39.25 -0.34 -5.74 16 13 C 0.47 6.68 5.06 36.00 0.18 6.86 16 14 O -0.50 -8.25 15.14 -18.76 -0.28 -8.54 16 15 C -0.01 -0.10 0.72 -155.69 -0.11 -0.21 16 16 C -0.12 -1.34 4.67 -104.48 -0.49 -1.82 16 17 C -0.06 -0.75 8.93 -39.28 -0.35 -1.10 16 18 C -0.16 -1.66 10.11 -39.44 -0.40 -2.06 16 19 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 20 N -0.48 -5.36 10.36 -13.25 -0.14 -5.50 16 21 C 0.11 1.10 9.25 -17.55 -0.16 0.94 16 22 C -0.11 -1.04 5.72 -25.55 -0.15 -1.18 16 23 C -0.13 -0.89 6.83 -25.01 -0.17 -1.06 16 24 C -0.13 -1.00 6.91 -24.73 -0.17 -1.17 16 25 C -0.11 -1.02 5.64 -25.07 -0.14 -1.16 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 28 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 32 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 33 H 0.13 1.72 5.94 -52.49 -0.31 1.41 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 36 H 0.16 1.19 7.84 -52.48 -0.41 0.78 16 37 H 0.08 0.83 7.64 -51.93 -0.40 0.43 16 38 H 0.08 0.71 7.03 -51.93 -0.36 0.35 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.63 7.35 -51.93 -0.38 0.25 16 44 H 0.09 0.98 6.83 -51.93 -0.35 0.63 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -32.15 356.46 -8.73 -40.88 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.80 Total: -0.94 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.64 Total: -15.58 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.64 Total: -32.26 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.62 Total: -14.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.15 -8.73 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808566903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.067 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds