Wall clock time and date at job start Tue Mar 31 2020 09:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37764 * 119.94390 * 2 1 4 4 C 1.39496 * 119.78880 * 180.38803 * 3 2 1 5 5 C 1.47291 * 119.98196 * 179.86955 * 4 3 2 6 6 O 1.21528 * 120.00065 * 179.72683 * 5 4 3 7 7 O 1.34763 * 120.00275 * 359.72452 * 5 4 3 8 8 C 1.45196 * 117.00358 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47336 * 180.02562 * 8 7 5 10 10 C 1.50694 * 109.47168 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.41110 * 120.03670 * 359.59812 * 4 3 2 19 19 C 1.38391 * 119.24014 * 359.82376 * 18 4 3 20 20 C 1.38362 * 119.94211 * 179.73498 * 2 1 3 21 21 C 1.50836 * 121.95468 * 180.58724 * 19 18 4 22 22 H 1.09005 * 109.44574 * 224.20793 * 21 19 18 23 23 C 1.53001 * 109.44527 * 104.29906 * 21 19 18 24 24 C 1.53053 * 109.62042 * 344.25579 * 21 19 18 25 25 C 1.53379 * 107.90212 * 47.13379 * 24 21 19 26 26 N 1.38520 * 117.66863 * 179.36611 * 18 4 3 27 27 H 1.09000 * 109.47351 * 270.26252 * 1 2 3 28 28 H 1.09001 * 109.46882 * 30.26446 * 1 2 3 29 29 H 1.08998 * 109.47622 * 150.26431 * 1 2 3 30 30 H 1.08001 * 120.10821 * 0.13160 * 3 2 1 31 31 H 1.09002 * 109.46964 * 60.00267 * 8 7 5 32 32 H 1.08998 * 109.47147 * 299.99858 * 8 7 5 33 33 H 1.09007 * 109.46922 * 59.99710 * 9 8 7 34 34 H 1.09003 * 109.46836 * 300.00465 * 9 8 7 35 35 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 36 36 H 1.08002 * 119.56892 * 359.91679 * 20 2 1 37 37 H 1.09005 * 109.46857 * 59.99831 * 23 21 19 38 38 H 1.08995 * 109.47282 * 179.97438 * 23 21 19 39 39 H 1.08994 * 109.47008 * 300.00170 * 23 21 19 40 40 H 1.09000 * 109.77443 * 166.73967 * 24 21 19 41 41 H 1.09004 * 109.76960 * 287.53249 * 24 21 19 42 42 H 1.08998 * 109.60759 * 51.72479 * 25 24 21 43 43 H 1.09002 * 109.60305 * 172.21091 * 25 24 21 44 44 H 1.00904 * 110.99982 * 285.59366 * 26 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1937 0.0000 4 6 3.5896 1.1900 -0.0082 5 6 4.3290 2.4638 -0.0111 6 8 5.5443 2.4609 -0.0133 7 8 3.6581 3.6325 -0.0115 8 6 4.4517 4.8484 -0.0139 9 6 3.5226 6.0640 -0.0133 10 6 4.3464 7.3258 -0.0164 11 1 5.4248 7.2668 -0.0190 12 6 3.7233 8.5559 -0.0160 13 7 2.4102 8.6278 -0.0134 14 14 4.7445 10.1200 -0.0191 15 1 5.0179 10.5355 1.3801 16 1 6.0290 9.8713 -0.7216 17 1 3.9983 11.1968 -0.7184 18 6 4.2926 -0.0335 -0.0079 19 6 3.5824 -1.2212 0.0043 20 6 2.1976 -1.1989 0.0055 21 6 4.2712 -2.5631 0.0185 22 1 3.7816 -3.2298 -0.6914 23 6 4.1865 -3.1643 1.4228 24 6 5.7405 -2.3908 -0.3742 25 6 6.3095 -1.2168 0.4324 26 7 5.6766 0.0199 -0.0298 27 1 -0.3634 0.0047 1.0276 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3634 -0.8923 -0.5097 30 1 1.6555 2.1295 0.0021 31 1 5.0794 4.8708 -0.9048 32 1 5.0818 4.8727 0.8752 33 1 2.8952 6.0413 0.8778 34 1 2.8922 6.0398 -0.9022 35 1 1.9719 9.4932 -0.0127 36 1 1.6496 -2.1296 0.0112 37 1 3.1402 -3.2897 1.7018 38 1 4.6837 -4.1342 1.4335 39 1 4.6746 -2.4976 2.1336 40 1 6.2935 -3.3007 -0.1414 41 1 5.8144 -2.1760 -1.4403 42 1 6.0963 -1.3631 1.4913 43 1 7.3869 -1.1558 0.2790 44 1 6.0140 0.2786 -0.9449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809554142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:01 Heat of formation + Delta-G solvation = -77.051995 kcal Electronic energy + Delta-G solvation = -24485.263508 eV Core-core repulsion = 20980.540182 eV Total energy + Delta-G solvation = -3504.723326 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93612 -39.30622 -37.25490 -35.93354 -34.38794 -33.28999 -32.01195 -30.87142 -29.89778 -28.18196 -26.33825 -25.31234 -24.07184 -23.37087 -22.78505 -20.88627 -20.08690 -19.12949 -17.26248 -17.19383 -16.29697 -16.16695 -15.76805 -15.55082 -15.08579 -15.00623 -14.53587 -14.42733 -13.93639 -13.67111 -13.32824 -13.23458 -13.06226 -12.86690 -12.38107 -12.33402 -12.27572 -12.18077 -11.85170 -11.71415 -11.21935 -11.17903 -11.06410 -10.97803 -10.75318 -10.66914 -10.62387 -10.10799 -9.63315 -9.53380 -9.35139 -9.22840 -8.87485 -8.40574 -7.87444 -6.06993 -4.10800 0.81107 1.25188 2.90123 3.29372 3.31045 3.37242 3.42928 3.75142 3.87784 4.34351 4.40751 4.43803 4.56083 4.80120 4.83783 4.91893 5.04176 5.14860 5.25318 5.29606 5.30077 5.32321 5.42615 5.49640 5.53432 5.55784 5.66117 5.70824 5.71718 5.88885 5.92633 6.02700 6.11583 6.18652 6.19720 6.25679 6.47307 6.70288 6.72188 7.02510 7.15624 7.25944 7.62086 7.68264 7.92072 8.26914 8.44979 8.94888 9.53255 11.04630 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.003033 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.350937 B = 9231.063448 C =10319.300993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.123 4.123 3 C -0.044 4.044 4 C -0.131 4.131 5 C 0.497 3.503 6 O -0.493 6.493 7 O -0.359 6.359 8 C 0.079 3.921 9 C 0.025 3.975 10 C -0.525 4.525 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.272 1.272 17 H -0.285 1.285 18 C 0.176 3.824 19 C -0.139 4.139 20 C -0.068 4.068 21 C -0.045 4.045 22 H 0.081 0.919 23 C -0.144 4.144 24 C -0.156 4.156 25 C 0.055 3.945 26 N -0.615 5.615 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.143 0.857 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.123 0.877 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.027 -26.298 -0.394 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.123 4.123 3 C -0.063 4.063 4 C -0.135 4.135 5 C 0.341 3.659 6 O -0.382 6.382 7 O -0.275 6.275 8 C 0.006 3.994 9 C -0.012 4.012 10 C -0.563 4.563 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.197 1.197 17 H -0.211 1.211 18 C 0.075 3.925 19 C -0.143 4.143 20 C -0.086 4.086 21 C -0.063 4.063 22 H 0.100 0.900 23 C -0.201 4.201 24 C -0.195 4.195 25 C -0.074 4.074 26 N -0.243 5.243 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.399 -25.799 0.164 25.803 hybrid contribution 0.456 0.503 -0.604 0.909 sum 0.855 -25.296 -0.439 25.314 Atomic orbital electron populations 1.20736 0.90662 1.02846 1.02390 1.19733 0.96435 0.92614 1.03562 1.21354 0.92491 0.98819 0.93626 1.19205 0.93264 0.90084 1.10943 1.20839 0.86247 0.84682 0.74142 1.90806 1.14353 1.88111 1.44919 1.86565 1.42506 1.15159 1.83312 1.23571 0.94869 0.80174 1.00798 1.19158 0.94841 0.88451 0.98773 1.20996 0.93130 0.90226 1.51945 0.92276 1.24983 0.95000 0.99260 0.94937 1.69977 1.07904 1.25089 1.49959 0.86481 0.80155 0.82499 0.78228 1.20499 1.19724 1.21082 1.18287 0.88530 0.90790 0.94925 1.19740 0.93869 0.93877 1.06790 1.20987 0.92917 0.97619 0.97111 1.20027 0.95128 0.92957 0.98221 0.90032 1.21901 1.02158 1.00334 0.95704 1.22367 0.96034 1.00535 1.00572 1.22209 0.98894 0.86229 1.00031 1.56398 1.03085 1.32540 1.32289 0.91241 0.91142 0.91788 0.83970 0.92480 0.92435 0.95412 0.95426 0.92761 0.85954 0.92360 0.92300 0.92242 0.90461 0.91505 0.90076 0.89742 0.80228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.00 0.36 -0.59 16 2 C -0.12 -1.38 5.87 -104.75 -0.61 -2.00 16 3 C -0.04 -0.62 9.24 -39.29 -0.36 -0.98 16 4 C -0.13 -2.08 5.90 -104.66 -0.62 -2.70 16 5 C 0.50 9.58 7.88 34.41 0.27 9.85 16 6 O -0.49 -10.19 14.36 -19.29 -0.28 -10.47 16 7 O -0.36 -7.60 9.44 -40.66 -0.38 -7.98 16 8 C 0.08 1.82 5.41 37.16 0.20 2.02 16 9 C 0.02 0.67 5.35 -27.89 -0.15 0.52 16 10 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 14 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 C 0.18 2.39 6.13 -83.70 -0.51 1.88 16 19 C -0.14 -1.53 5.04 -104.40 -0.53 -2.06 16 20 C -0.07 -0.69 9.10 -39.44 -0.36 -1.05 16 21 C -0.04 -0.37 2.81 -91.68 -0.26 -0.62 16 22 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 23 C -0.14 -1.04 8.94 37.16 0.33 -0.71 16 24 C -0.16 -1.19 5.63 -26.51 -0.15 -1.34 16 25 C 0.05 0.53 6.57 -3.89 -0.03 0.50 16 26 N -0.61 -8.04 4.41 -58.34 -0.26 -8.29 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.14 2.02 7.59 -52.49 -0.40 1.62 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 0.94 8.05 -52.49 -0.42 0.52 16 37 H 0.06 0.41 8.05 -51.93 -0.42 -0.01 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.49 6.62 -51.93 -0.34 0.15 16 40 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.81 6.49 -51.93 -0.34 0.47 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.37 4.68 8.42 -39.29 -0.33 4.35 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -32.08 359.61 -9.46 -41.54 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.86 Total: 0.07 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.82 Total: -10.98 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.48 Total: -34.25 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.66 Total: -18.45 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.08 -9.46 -41.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809554142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.516 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds