Wall clock time and date at job start Tue Mar 31 2020 09:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37772 * 119.94614 * 2 1 4 4 C 1.39488 * 119.79113 * 180.43468 * 3 2 1 5 5 C 1.47302 * 119.97834 * 179.80526 * 4 3 2 6 6 O 1.21527 * 119.99718 * 179.72619 * 5 4 3 7 7 O 1.34764 * 120.00199 * 359.72498 * 5 4 3 8 8 C 1.45198 * 117.00033 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46884 * 180.02562 * 8 7 5 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46725 * 60.00093 * 14 12 10 16 16 H 1.48505 * 109.46988 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47116 * 300.00069 * 14 12 10 18 18 C 1.41100 * 120.04084 * 359.53220 * 4 3 2 19 19 C 1.38392 * 119.23686 * 359.89172 * 18 4 3 20 20 C 1.38369 * 119.94524 * 179.75457 * 2 1 3 21 21 C 1.50836 * 121.95736 * 180.57620 * 19 18 4 22 22 H 1.09000 * 109.44012 * 104.35847 * 21 19 18 23 23 C 1.53001 * 109.42174 * 224.28099 * 21 19 18 24 24 C 1.53048 * 109.61899 * 344.31350 * 21 19 18 25 25 C 1.53379 * 107.90257 * 47.12679 * 24 21 19 26 26 N 1.38520 * 117.67158 * 179.51628 * 18 4 3 27 27 H 1.08993 * 109.47401 * 270.24331 * 1 2 3 28 28 H 1.09002 * 109.47037 * 30.25017 * 1 2 3 29 29 H 1.09003 * 109.46884 * 150.23942 * 1 2 3 30 30 H 1.08008 * 120.10513 * 0.16455 * 3 2 1 31 31 H 1.09002 * 109.47379 * 59.99759 * 8 7 5 32 32 H 1.09001 * 109.46782 * 299.99842 * 8 7 5 33 33 H 1.09001 * 109.47194 * 299.99482 * 9 8 7 34 34 H 1.08992 * 109.47399 * 59.99654 * 9 8 7 35 35 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 36 36 H 1.07995 * 119.56603 * 359.94517 * 20 2 1 37 37 H 1.09007 * 109.46754 * 180.13868 * 23 21 19 38 38 H 1.08991 * 109.47535 * 300.13507 * 23 21 19 39 39 H 1.09002 * 109.47187 * 60.14489 * 23 21 19 40 40 H 1.08992 * 109.77879 * 287.52254 * 24 21 19 41 41 H 1.09002 * 109.77443 * 166.72489 * 24 21 19 42 42 H 1.09002 * 109.60542 * 172.20876 * 25 24 21 43 43 H 1.08997 * 109.74561 * 51.79736 * 25 24 21 44 44 H 1.00897 * 111.00017 * 285.58829 * 26 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1938 0.0000 4 6 3.5895 1.1900 -0.0092 5 6 4.3290 2.4640 -0.0136 6 8 5.5443 2.4611 -0.0165 7 8 3.6579 3.6327 -0.0143 8 6 4.4516 4.8485 -0.0193 9 6 3.5223 6.0640 -0.0187 10 6 4.3461 7.3260 -0.0245 11 1 5.4244 7.2669 -0.0278 12 6 3.7230 8.5560 -0.0256 13 7 2.4098 8.6279 -0.0221 14 14 4.7440 10.1202 -0.0321 15 1 5.5974 10.1492 -1.2471 16 1 3.8421 11.3000 -0.0329 17 1 5.6041 10.1549 1.1779 18 6 4.2926 -0.0333 -0.0085 19 6 3.5825 -1.2211 0.0037 20 6 2.1977 -1.1990 0.0051 21 6 4.2712 -2.5629 0.0180 22 1 4.2097 -2.9916 1.0183 23 6 3.5849 -3.4978 -0.9799 24 6 5.7408 -2.3904 -0.3730 25 6 6.3090 -1.2167 0.4345 26 7 5.6767 0.0202 -0.0282 27 1 -0.3634 0.0044 1.0276 28 1 -0.3633 0.8878 -0.5177 29 1 -0.3633 -0.8922 -0.5101 30 1 1.6555 2.1296 0.0027 31 1 5.0780 4.8700 -0.9110 32 1 5.0829 4.8739 0.8689 33 1 2.8907 6.0389 -0.9067 34 1 2.8963 6.0424 0.8732 35 1 1.9714 9.4932 -0.0233 36 1 1.6497 -2.1296 0.0100 37 1 4.0805 -4.4686 -0.9684 38 1 2.5383 -3.6209 -0.7018 39 1 3.6472 -3.0700 -1.9806 40 1 5.8161 -2.1754 -1.4388 41 1 6.2938 -3.3004 -0.1397 42 1 7.3866 -1.1556 0.2823 43 1 6.0970 -1.3617 1.4938 44 1 6.0155 0.2792 -0.9426 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809554144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:04 Heat of formation + Delta-G solvation = -76.893200 kcal Electronic energy + Delta-G solvation = -24443.830484 eV Core-core repulsion = 20939.114043 eV Total energy + Delta-G solvation = -3504.716440 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.91280 -39.29424 -37.17900 -35.94548 -34.58039 -33.28847 -32.05161 -30.80845 -29.87252 -28.38077 -26.35651 -25.31786 -24.06011 -22.93480 -22.67403 -20.86599 -20.00575 -19.67165 -17.23528 -17.20661 -16.41619 -16.21088 -15.78719 -15.56024 -15.20685 -14.81102 -14.46971 -14.17956 -14.02624 -13.69239 -13.37554 -13.21648 -13.06239 -12.78989 -12.48060 -12.31071 -12.23233 -12.10895 -11.97739 -11.73772 -11.34555 -11.13834 -11.07151 -10.98999 -10.73491 -10.65052 -10.63461 -10.11288 -9.63169 -9.53162 -9.35065 -9.23681 -8.87128 -8.40193 -7.86825 -6.06675 -4.10667 0.81379 1.25445 2.90366 3.29288 3.32661 3.36480 3.42011 3.75335 3.87655 4.33945 4.37968 4.43224 4.55009 4.77389 4.84296 4.93724 5.10804 5.11114 5.15709 5.25838 5.29771 5.36419 5.41178 5.49861 5.54034 5.55827 5.64065 5.68378 5.77429 5.89191 5.91981 5.95729 6.11532 6.18617 6.19627 6.25369 6.47685 6.70487 6.72228 7.02329 7.15590 7.25856 7.61991 7.68434 7.92176 8.27007 8.44990 8.94796 9.53348 11.04897 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.003008 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.180903 B = 9306.081773 C =10415.134401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.123 4.123 3 C -0.045 4.045 4 C -0.131 4.131 5 C 0.497 3.503 6 O -0.493 6.493 7 O -0.358 6.358 8 C 0.078 3.922 9 C 0.025 3.975 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.175 3.825 19 C -0.140 4.140 20 C -0.069 4.069 21 C -0.045 4.045 22 H 0.082 0.918 23 C -0.143 4.143 24 C -0.155 4.155 25 C 0.056 3.944 26 N -0.615 5.615 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.142 0.858 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.125 0.875 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.176 -26.410 -1.105 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.124 4.124 3 C -0.063 4.063 4 C -0.135 4.135 5 C 0.341 3.659 6 O -0.382 6.382 7 O -0.275 6.275 8 C 0.006 3.994 9 C -0.012 4.012 10 C -0.564 4.564 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C 0.074 3.926 19 C -0.143 4.143 20 C -0.088 4.088 21 C -0.064 4.064 22 H 0.100 0.900 23 C -0.200 4.200 24 C -0.194 4.194 25 C -0.073 4.073 26 N -0.244 5.244 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.189 -25.910 -0.547 25.916 hybrid contribution 0.489 0.506 -0.588 0.917 sum 0.678 -25.404 -1.135 25.438 Atomic orbital electron populations 1.20735 0.90666 1.02839 1.02393 1.19746 0.96438 0.92626 1.03542 1.21356 0.92490 0.98824 0.93644 1.19201 0.93268 0.90076 1.10941 1.20842 0.86244 0.84684 0.74133 1.90804 1.14358 1.88112 1.44928 1.86566 1.42501 1.15159 1.83311 1.23573 0.94873 0.80174 1.00796 1.19152 0.94832 0.88434 0.98770 1.20960 0.93096 0.90240 1.52085 0.92325 1.24977 0.94998 0.99242 0.94922 1.69962 1.07906 1.25211 1.49866 0.86541 0.79905 0.82123 0.78777 1.20087 1.21147 1.20070 1.18291 0.88531 0.90804 0.94966 1.19763 0.93915 0.93840 1.06810 1.21040 0.92989 0.97663 0.97093 1.20030 0.94166 0.92006 1.00161 0.90016 1.21872 1.00472 0.98650 0.99051 1.22367 0.95867 1.00392 1.00786 1.22166 0.98984 0.86255 0.99849 1.56403 1.03061 1.32522 1.32364 0.91232 0.91141 0.91798 0.83972 0.92483 0.92431 0.95432 0.95410 0.92697 0.85741 0.92327 0.92179 0.92412 0.91409 0.90546 0.89672 0.90279 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.00 0.36 -0.59 16 2 C -0.12 -1.39 5.87 -104.75 -0.61 -2.00 16 3 C -0.04 -0.62 9.24 -39.29 -0.36 -0.99 16 4 C -0.13 -2.08 5.90 -104.66 -0.62 -2.70 16 5 C 0.50 9.60 7.88 34.42 0.27 9.87 16 6 O -0.49 -10.21 14.35 -19.29 -0.28 -10.49 16 7 O -0.36 -7.61 9.44 -40.67 -0.38 -7.99 16 8 C 0.08 1.82 5.41 37.16 0.20 2.02 16 9 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 10 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 14 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.18 2.39 6.13 -83.70 -0.51 1.88 16 19 C -0.14 -1.54 5.41 -104.40 -0.56 -2.11 16 20 C -0.07 -0.71 8.71 -39.44 -0.34 -1.05 16 21 C -0.05 -0.37 2.87 -91.68 -0.26 -0.63 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 23 C -0.14 -0.94 8.74 37.16 0.32 -0.62 16 24 C -0.16 -1.18 5.51 -26.51 -0.15 -1.32 16 25 C 0.06 0.54 6.60 -3.89 -0.03 0.51 16 26 N -0.61 -8.06 4.41 -58.34 -0.26 -8.32 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.14 2.02 7.59 -52.48 -0.40 1.62 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.12 0.96 6.48 -52.49 -0.34 0.62 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.36 6.51 -51.93 -0.34 0.02 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 44 H 0.37 4.69 8.42 -39.29 -0.33 4.36 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -32.10 359.37 -9.50 -41.60 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.86 Total: 0.02 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.85 Total: -10.94 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.48 Total: -34.30 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.66 Total: -18.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.10 -9.50 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809554144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.294 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds