Wall clock time and date at job start Tue Mar 31 2020 08:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99472 * 2 1 4 4 H 1.48500 * 109.47011 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.47351 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46862 * 120.00017 * 3 2 1 7 7 C 1.37871 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00204 * 184.94452 * 7 2 1 9 9 C 1.50701 * 120.00369 * 4.94356 * 7 2 1 10 10 H 1.09006 * 109.46846 * 329.58542 * 9 7 2 11 11 C 1.52997 * 109.47408 * 209.58610 * 9 7 2 12 12 C 1.50704 * 109.47146 * 64.99800 * 11 9 7 13 13 O 1.21278 * 120.00101 * 0.02562 * 12 11 9 14 14 N 1.34773 * 119.99926 * 180.02562 * 12 11 9 15 15 O 1.41607 * 120.00060 * 180.02562 * 14 12 11 16 16 C 1.42901 * 114.00037 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.46760 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.46648 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49655 * 243.74561 * 18 17 16 20 20 C 1.53006 * 117.49707 * 175.08914 * 18 17 16 21 21 C 1.50697 * 109.47216 * 89.57944 * 9 7 2 22 22 C 1.38232 * 119.99428 * 56.77677 * 21 9 7 23 23 C 1.38238 * 120.00085 * 179.78481 * 22 21 9 24 24 C 1.38238 * 119.99614 * 0.44132 * 23 22 21 25 25 C 1.38233 * 120.00120 * 359.81144 * 24 23 22 26 26 C 1.38234 * 119.99991 * 359.97438 * 25 24 23 27 27 H 0.97000 * 120.00302 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46913 * 304.99907 * 11 9 7 29 29 H 1.08996 * 109.47470 * 184.99760 * 11 9 7 30 30 H 0.96999 * 120.00155 * 359.97438 * 14 12 11 31 31 H 1.09007 * 109.46649 * 60.00055 * 16 15 14 32 32 H 1.08991 * 109.47122 * 300.00029 * 16 15 14 33 33 H 1.08999 * 109.47246 * 299.99776 * 17 16 15 34 34 H 1.08997 * 109.46973 * 60.00285 * 17 16 15 35 35 H 1.08997 * 115.55482 * 29.41922 * 18 17 16 36 36 H 1.09001 * 117.50234 * 359.97438 * 19 18 17 37 37 H 1.09004 * 117.49975 * 145.02576 * 19 18 17 38 38 H 1.09008 * 117.49676 * 214.97897 * 20 18 17 39 39 H 1.08992 * 117.50015 * 359.97438 * 20 18 17 40 40 H 1.08005 * 120.00791 * 359.97438 * 22 21 9 41 41 H 1.08003 * 120.00704 * 180.26987 * 23 22 21 42 42 H 1.07995 * 119.99761 * 179.83166 * 24 23 22 43 43 H 1.08000 * 120.00216 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00540 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0812 9 6 1.2554 -2.4968 -0.1113 10 1 0.2698 -2.3892 0.3417 11 6 2.0330 -3.5963 0.6147 12 6 2.0798 -3.2886 2.0892 13 8 1.5435 -2.2887 2.5173 14 7 2.7176 -4.1247 2.9322 15 8 2.7610 -3.8359 4.3178 16 6 3.4686 -4.8066 5.0919 17 6 3.4521 -4.3943 6.5652 18 6 4.2102 -5.4332 7.3939 19 6 3.4157 -6.2207 8.4377 20 6 4.4065 -5.1424 8.8832 21 6 1.1027 -2.8652 -1.5646 22 6 2.2213 -2.9907 -2.3669 23 6 2.0817 -3.3331 -3.6989 24 6 0.8227 -3.5410 -4.2307 25 6 -0.2962 -3.4104 -3.4296 26 6 -0.1563 -3.0724 -2.0966 27 1 -0.4850 0.8400 -0.0004 28 1 3.0484 -3.6436 0.2210 29 1 1.5380 -4.5548 0.4591 30 1 3.1462 -4.9247 2.5898 31 1 4.4997 -4.8676 4.7435 32 1 2.9894 -5.7792 4.9810 33 1 3.9316 -3.4217 6.6758 34 1 2.4212 -4.3329 6.9138 35 1 5.0127 -5.9554 6.8731 36 1 2.3529 -5.9984 8.5343 37 1 3.6958 -7.2610 8.6038 38 1 5.3381 -5.4736 9.3422 39 1 3.9959 -4.2108 9.2724 40 1 3.2047 -2.8243 -1.9525 41 1 2.9559 -3.4354 -4.3248 42 1 0.7134 -3.8058 -5.2720 43 1 -1.2798 -3.5725 -3.8452 44 1 -1.0304 -2.9708 -1.4705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817408339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:38 Heat of formation + Delta-G solvation = 8.639259 kcal Electronic energy + Delta-G solvation = -23791.580431 eV Core-core repulsion = 20290.572957 eV Total energy + Delta-G solvation = -3501.007475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.98511 -38.33541 -37.93711 -36.59195 -33.94811 -32.34660 -31.41294 -30.14520 -30.00062 -28.46680 -25.43879 -23.63444 -22.78332 -22.64883 -21.63671 -20.89755 -20.24670 -19.24469 -17.71659 -16.62060 -16.34761 -16.02130 -15.73204 -15.45651 -14.68560 -14.43576 -14.22863 -14.08326 -13.87170 -13.61196 -13.09395 -12.82755 -12.53677 -12.31167 -12.16804 -11.90106 -11.85434 -11.75715 -11.62195 -11.52089 -10.83873 -10.81569 -10.65440 -10.60385 -10.56380 -10.26744 -10.15721 -10.04615 -9.44318 -9.12549 -8.88643 -8.37664 -8.28213 -8.04808 -7.63360 -5.90321 -3.90235 2.24530 2.28510 2.41394 3.42287 3.45597 3.47510 3.48744 3.57311 4.29808 4.54729 4.57937 4.61466 4.73866 4.80188 4.96271 5.06062 5.17915 5.33939 5.35114 5.40701 5.59858 5.62287 5.66361 5.68208 5.72603 5.79393 5.83603 5.84287 6.03294 6.03828 6.12365 6.27224 6.40872 6.50893 6.74733 6.89727 7.02777 7.30197 7.30948 7.44362 7.51905 7.88628 7.94322 7.95329 8.06926 8.38388 9.08229 9.13831 9.71198 11.19690 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.003133 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.749682 B = 8934.306617 C =10190.573519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.078 3.922 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.496 4.496 8 H 0.051 0.949 9 C 0.079 3.921 10 H 0.075 0.925 11 C -0.107 4.107 12 C 0.519 3.481 13 O -0.473 6.473 14 N -0.616 5.616 15 O -0.154 6.154 16 C 0.038 3.962 17 C -0.084 4.084 18 C -0.151 4.151 19 C -0.181 4.181 20 C -0.178 4.178 21 C -0.023 4.023 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.154 4.154 25 C -0.128 4.128 26 C -0.118 4.118 27 H 0.260 0.740 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.396 0.604 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.980 -14.366 7.021 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.533 4.533 8 H 0.070 0.930 9 C 0.060 3.940 10 H 0.093 0.907 11 C -0.147 4.147 12 C 0.306 3.694 13 O -0.340 6.340 14 N -0.323 5.323 15 O -0.157 6.157 16 C -0.040 4.040 17 C -0.123 4.123 18 C -0.169 4.169 19 C -0.218 4.218 20 C -0.215 4.215 21 C -0.024 4.024 22 C -0.132 4.132 23 C -0.151 4.151 24 C -0.173 4.173 25 C -0.147 4.147 26 C -0.136 4.136 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.235 0.765 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.284 -13.258 7.428 16.445 hybrid contribution 0.940 0.415 -0.084 1.031 sum 7.224 -12.842 7.343 16.463 Atomic orbital electron populations 1.69886 1.05904 1.26552 1.49295 1.24809 0.94684 0.98896 0.94175 0.86757 0.79803 0.83649 0.78393 1.20394 1.21374 1.20276 1.20648 0.92418 0.89631 1.50648 0.93047 1.17849 0.98858 0.91254 0.86022 0.90672 1.21767 1.03034 1.01318 0.88621 1.21242 0.77896 0.82810 0.87443 1.90797 1.42022 1.24672 1.76520 1.48218 1.61382 1.28242 0.94476 1.90572 1.76826 1.44131 1.04177 1.22835 0.96490 0.92968 0.91687 1.21011 1.01239 0.98643 0.91370 1.22149 1.02209 1.01415 0.91122 1.23096 0.97930 0.97029 1.03715 1.22991 1.01225 1.00680 0.96619 1.20711 0.91812 0.90800 0.99086 1.20962 0.99024 1.00033 0.93195 1.20981 0.96550 1.01828 0.95693 1.20805 0.93118 1.04612 0.98729 1.20987 0.97600 1.01528 0.94538 1.21104 0.97730 0.99949 0.94828 0.93036 0.90035 0.91086 0.76517 0.92564 0.92499 0.90270 0.90543 0.87576 0.88547 0.88817 0.88719 0.88557 0.86784 0.87641 0.87799 0.87607 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.10 12.85 55.43 0.71 -25.39 16 2 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 3 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.50 -13.41 6.38 -34.44 -0.22 -13.63 16 8 H 0.05 1.38 7.82 -52.48 -0.41 0.97 16 9 C 0.08 1.88 1.68 -92.93 -0.16 1.72 16 10 H 0.08 2.06 6.95 -51.93 -0.36 1.70 16 11 C -0.11 -2.03 4.95 -27.88 -0.14 -2.16 16 12 C 0.52 10.88 7.72 -10.98 -0.08 10.80 16 13 O -0.47 -12.72 15.39 -12.63 -0.19 -12.91 16 14 N -0.62 -10.15 6.39 31.22 0.20 -9.95 16 15 O -0.15 -2.63 11.11 -29.67 -0.33 -2.96 16 16 C 0.04 0.43 6.19 37.16 0.23 0.66 16 17 C -0.08 -0.86 5.86 -26.73 -0.16 -1.02 16 18 C -0.15 -1.22 5.73 -90.62 -0.52 -1.74 16 19 C -0.18 -1.34 10.18 -26.69 -0.27 -1.61 16 20 C -0.18 -1.32 10.25 -26.69 -0.27 -1.59 16 21 C -0.02 -0.51 4.77 -104.63 -0.50 -1.01 16 22 C -0.11 -2.25 8.86 -39.58 -0.35 -2.60 16 23 C -0.13 -2.33 10.05 -39.58 -0.40 -2.72 16 24 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 25 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 26 C -0.12 -2.46 9.67 -39.58 -0.38 -2.84 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.08 1.38 7.76 -51.93 -0.40 0.98 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.40 4.70 8.54 -40.82 -0.35 4.35 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.82 7.88 -51.93 -0.41 0.41 16 35 H 0.11 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.10 0.72 8.03 -51.93 -0.42 0.31 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.11 2.16 7.75 -52.48 -0.41 1.75 16 41 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.11 2.42 7.95 -52.49 -0.42 2.00 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -34.05 374.68 -10.06 -44.11 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.96 Total: 5.44 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -4.11 Total: -21.39 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.91 Total: -35.34 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.52 Total: -15.87 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.05 -10.06 -44.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817408339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.746 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds