Wall clock time and date at job start Tue Mar 31 2020 08:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99472 * 2 1 4 4 H 1.48500 * 109.47011 * 239.99699 * 3 2 1 5 5 H 1.48498 * 109.47351 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46862 * 120.00017 * 3 2 1 7 7 C 1.37871 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00204 * 184.94452 * 7 2 1 9 9 C 1.50701 * 120.00369 * 4.94356 * 7 2 1 10 10 H 1.09006 * 109.46846 * 329.58542 * 9 7 2 11 11 C 1.52997 * 109.47408 * 209.58610 * 9 7 2 12 12 C 1.50704 * 109.47146 * 64.99800 * 11 9 7 13 13 O 1.21278 * 120.00101 * 0.02562 * 12 11 9 14 14 N 1.34773 * 119.99926 * 180.02562 * 12 11 9 15 15 O 1.41607 * 120.00060 * 180.02562 * 14 12 11 16 16 C 1.42901 * 114.00037 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.46760 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.46648 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49655 * 243.74561 * 18 17 16 20 20 C 1.53006 * 117.49707 * 175.08914 * 18 17 16 21 21 C 1.50697 * 109.47216 * 89.57944 * 9 7 2 22 22 C 1.38232 * 119.99428 * 56.77677 * 21 9 7 23 23 C 1.38238 * 120.00085 * 179.78481 * 22 21 9 24 24 C 1.38238 * 119.99614 * 0.44132 * 23 22 21 25 25 C 1.38233 * 120.00120 * 359.81144 * 24 23 22 26 26 C 1.38234 * 119.99991 * 359.97438 * 25 24 23 27 27 H 0.97000 * 120.00302 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46913 * 304.99907 * 11 9 7 29 29 H 1.08996 * 109.47470 * 184.99760 * 11 9 7 30 30 H 0.96999 * 120.00155 * 359.97438 * 14 12 11 31 31 H 1.09007 * 109.46649 * 60.00055 * 16 15 14 32 32 H 1.08991 * 109.47122 * 300.00029 * 16 15 14 33 33 H 1.08999 * 109.47246 * 299.99776 * 17 16 15 34 34 H 1.08997 * 109.46973 * 60.00285 * 17 16 15 35 35 H 1.08997 * 115.55482 * 29.41922 * 18 17 16 36 36 H 1.09001 * 117.50234 * 359.97438 * 19 18 17 37 37 H 1.09004 * 117.49975 * 145.02576 * 19 18 17 38 38 H 1.09008 * 117.49676 * 214.97897 * 20 18 17 39 39 H 1.08992 * 117.50015 * 359.97438 * 20 18 17 40 40 H 1.08005 * 120.00791 * 359.97438 * 22 21 9 41 41 H 1.08003 * 120.00704 * 180.26987 * 23 22 21 42 42 H 1.07995 * 119.99761 * 179.83166 * 24 23 22 43 43 H 1.08000 * 120.00216 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00540 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1957 0.0812 9 6 1.2554 -2.4968 -0.1113 10 1 0.2698 -2.3892 0.3417 11 6 2.0330 -3.5963 0.6147 12 6 2.0798 -3.2886 2.0892 13 8 1.5435 -2.2887 2.5173 14 7 2.7176 -4.1247 2.9322 15 8 2.7610 -3.8359 4.3178 16 6 3.4686 -4.8066 5.0919 17 6 3.4521 -4.3943 6.5652 18 6 4.2102 -5.4332 7.3939 19 6 3.4157 -6.2207 8.4377 20 6 4.4065 -5.1424 8.8832 21 6 1.1027 -2.8652 -1.5646 22 6 2.2213 -2.9907 -2.3669 23 6 2.0817 -3.3331 -3.6989 24 6 0.8227 -3.5410 -4.2307 25 6 -0.2962 -3.4104 -3.4296 26 6 -0.1563 -3.0724 -2.0966 27 1 -0.4850 0.8400 -0.0004 28 1 3.0484 -3.6436 0.2210 29 1 1.5380 -4.5548 0.4591 30 1 3.1462 -4.9247 2.5898 31 1 4.4997 -4.8676 4.7435 32 1 2.9894 -5.7792 4.9810 33 1 3.9316 -3.4217 6.6758 34 1 2.4212 -4.3329 6.9138 35 1 5.0127 -5.9554 6.8731 36 1 2.3529 -5.9984 8.5343 37 1 3.6958 -7.2610 8.6038 38 1 5.3381 -5.4736 9.3422 39 1 3.9959 -4.2108 9.2724 40 1 3.2047 -2.8243 -1.9525 41 1 2.9559 -3.4354 -4.3248 42 1 0.7134 -3.8058 -5.2720 43 1 -1.2798 -3.5725 -3.8452 44 1 -1.0304 -2.9708 -1.4705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817408339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:37 Heat of formation + Delta-G solvation = -10.475455 kcal Electronic energy + Delta-G solvation = -23792.409308 eV Core-core repulsion = 20290.572957 eV Total energy + Delta-G solvation = -3501.836351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57002 -39.70216 -38.91607 -37.77813 -35.75088 -33.80696 -33.22009 -31.47686 -31.28720 -29.93404 -27.35755 -24.67311 -24.36571 -23.23090 -23.11699 -22.03656 -21.37158 -20.85696 -19.02018 -18.47599 -17.93940 -17.13691 -17.00866 -16.48573 -16.39408 -15.86503 -15.64522 -15.45073 -15.32207 -14.83058 -14.52858 -14.17704 -13.96595 -13.84562 -13.66190 -13.44956 -13.19353 -12.87461 -12.79958 -12.52979 -12.50054 -12.39108 -12.31081 -11.83269 -11.81201 -11.67909 -11.30472 -11.23935 -10.98997 -10.85885 -10.66017 -10.40912 -9.77479 -9.51058 -9.18255 -8.02170 -6.05105 0.80939 0.82798 1.06129 1.37436 1.41401 1.45297 1.93649 2.47816 2.85504 3.20387 3.36324 3.46314 3.85787 3.92742 4.00926 4.03152 4.15533 4.26525 4.29110 4.36311 4.38441 4.41417 4.56877 4.59681 4.62718 4.74744 4.78649 4.89183 4.94648 4.97422 5.00319 5.03643 5.20364 5.25489 5.31949 5.40493 5.53523 5.68304 5.79861 5.86933 5.93974 5.99583 6.19517 6.42423 6.48694 6.61064 7.02571 7.57159 7.61453 9.07211 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.003133 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.749682 B = 8934.306617 C =10190.573519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.489 4.489 8 H 0.049 0.951 9 C 0.081 3.919 10 H 0.025 0.975 11 C -0.100 4.100 12 C 0.518 3.482 13 O -0.547 6.547 14 N -0.594 5.594 15 O -0.189 6.189 16 C 0.033 3.967 17 C -0.082 4.082 18 C -0.154 4.154 19 C -0.179 4.179 20 C -0.179 4.179 21 C -0.046 4.046 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.143 4.143 27 H 0.253 0.747 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.422 0.578 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.131 0.869 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.269 -16.745 5.436 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.062 3.938 10 H 0.043 0.957 11 C -0.140 4.140 12 C 0.307 3.693 13 O -0.420 6.420 14 N -0.301 5.301 15 O -0.193 6.193 16 C -0.043 4.043 17 C -0.120 4.120 18 C -0.172 4.172 19 C -0.216 4.216 20 C -0.216 4.216 21 C -0.047 4.047 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.164 4.164 25 C -0.147 4.147 26 C -0.161 4.161 27 H 0.062 0.938 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.264 0.736 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.149 0.851 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.635 -15.713 5.837 18.856 hybrid contribution 0.270 0.990 0.447 1.119 sum 8.905 -14.723 6.283 18.318 Atomic orbital electron populations 1.70043 1.07134 1.26416 1.52058 1.25514 0.95355 1.01884 0.95084 0.85987 0.78728 0.80706 0.78462 1.18784 1.21544 1.20935 1.21008 0.92379 0.91106 1.48238 0.93237 1.17625 0.96464 0.91770 0.87984 0.95664 1.21667 1.04169 1.01086 0.87053 1.21557 0.77101 0.82153 0.88536 1.90773 1.45375 1.27939 1.77923 1.47715 1.59721 1.28010 0.94662 1.90573 1.78031 1.46654 1.04051 1.23151 0.97206 0.92628 0.91335 1.20999 1.00903 0.99022 0.91124 1.22108 1.02633 1.01237 0.91259 1.23170 0.97686 0.97800 1.02930 1.23080 1.01893 1.00618 0.95988 1.20487 0.93104 0.93200 0.97904 1.21070 0.98379 1.00536 0.94268 1.21382 0.98218 0.99909 0.94915 1.21270 0.92299 1.02533 1.00319 1.21274 0.99627 1.00488 0.93316 1.21108 0.96884 1.01804 0.96294 0.93795 0.87282 0.87704 0.73552 0.90582 0.90565 0.91472 0.91664 0.86142 0.89079 0.87336 0.87290 0.89092 0.86226 0.84065 0.83939 0.85150 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.37 12.85 21.44 0.28 -57.09 16 2 C 0.02 1.20 5.45 84.65 0.46 1.66 16 3 Si 0.93 47.23 29.54 68.60 2.03 49.26 16 4 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.28 -14.43 7.11 99.48 0.71 -13.73 16 7 C -0.49 -27.15 6.38 25.60 0.16 -26.99 16 8 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 9 C 0.08 3.96 1.68 -12.29 -0.02 3.94 16 10 H 0.02 1.48 6.95 -2.38 -0.02 1.46 16 11 C -0.10 -3.74 4.95 29.85 0.15 -3.59 16 12 C 0.52 22.06 7.72 87.66 0.68 22.74 16 13 O -0.55 -30.91 15.39 14.37 0.22 -30.69 16 14 N -0.59 -19.12 6.39 -173.54 -1.11 -20.22 16 15 O -0.19 -6.44 11.11 -21.41 -0.24 -6.68 16 16 C 0.03 0.72 6.19 71.98 0.45 1.16 16 17 C -0.08 -1.64 5.86 30.59 0.18 -1.46 16 18 C -0.15 -2.25 5.73 -10.79 -0.06 -2.31 16 19 C -0.18 -2.35 10.18 30.62 0.31 -2.04 16 20 C -0.18 -2.39 10.25 30.62 0.31 -2.08 16 21 C -0.05 -2.02 4.77 -19.87 -0.09 -2.12 16 22 C -0.12 -4.67 8.86 22.27 0.20 -4.47 16 23 C -0.13 -3.94 10.05 22.27 0.22 -3.72 16 24 C -0.15 -4.41 10.05 22.27 0.22 -4.18 16 25 C -0.13 -4.43 10.05 22.27 0.22 -4.21 16 26 C -0.14 -6.02 9.67 22.27 0.22 -5.81 16 27 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.11 3.48 7.76 -2.39 -0.02 3.46 16 29 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.42 9.03 8.54 -92.71 -0.79 8.24 16 31 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.43 7.88 -2.39 -0.02 1.41 16 35 H 0.12 1.43 8.08 -2.39 -0.02 1.41 16 36 H 0.09 1.29 8.03 -2.39 -0.02 1.27 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.12 4.26 7.75 -2.91 -0.02 4.23 16 41 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 42 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 43 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -79.20 374.68 4.97 -74.22 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.19 Total: 24.68 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 3.61 Total: -33.48 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -0.83 Total: -77.32 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.02 Total: -37.37 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -79.20 4.97 -74.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817408339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.746 kcal (2) G-P(sol) polarization free energy of solvation -79.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds