Wall clock time and date at job start Tue Mar 31 2020 08:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99798 * 2 1 4 4 H 1.48493 * 109.47077 * 270.00108 * 3 2 1 5 5 H 1.48507 * 109.46860 * 29.99937 * 3 2 1 6 6 H 1.48498 * 109.46869 * 149.99626 * 3 2 1 7 7 C 1.38943 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00599 * 197.99150 * 7 2 1 9 9 N 1.37100 * 119.99757 * 17.99012 * 7 2 1 10 10 C 1.34777 * 120.00083 * 44.48812 * 9 7 2 11 11 O 1.21286 * 119.99860 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99693 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.46641 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47001 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47196 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.47324 * 55.00148 * 15 14 13 17 17 O 1.42896 * 109.47652 * 295.00292 * 15 14 13 18 18 C 1.50701 * 109.47329 * 174.99873 * 15 14 13 19 19 C 1.38239 * 119.99486 * 84.73180 * 18 15 14 20 20 C 1.38240 * 119.99730 * 179.78971 * 19 18 15 21 21 C 1.38237 * 119.99813 * 0.43987 * 20 19 18 22 22 C 1.38234 * 120.00243 * 359.81285 * 21 20 19 23 23 C 1.38230 * 120.00163 * 265.00325 * 18 15 14 24 24 C 1.46505 * 119.99767 * 224.48882 * 9 7 2 25 25 C 1.53000 * 117.50016 * 3.27282 * 24 9 7 26 26 C 1.53000 * 117.50008 * 294.61172 * 24 9 7 27 27 H 0.96995 * 120.00129 * 354.96689 * 1 2 3 28 28 H 1.08997 * 109.47034 * 60.00210 * 12 10 9 29 29 H 1.08992 * 109.47002 * 299.99914 * 12 10 9 30 30 H 1.08997 * 109.47326 * 60.00278 * 13 12 10 31 31 H 1.09003 * 109.46967 * 300.00003 * 13 12 10 32 32 H 1.09008 * 109.47295 * 60.00111 * 14 13 12 33 33 H 1.08992 * 109.47576 * 300.00224 * 14 13 12 34 34 H 0.96707 * 114.00224 * 300.00377 * 17 15 14 35 35 H 1.08006 * 120.00469 * 359.97438 * 19 18 15 36 36 H 1.08000 * 120.00203 * 180.26692 * 20 19 18 37 37 H 1.07996 * 119.99888 * 179.83402 * 21 20 19 38 38 H 1.07996 * 120.00052 * 179.97438 * 22 21 20 39 39 H 1.07993 * 120.00303 * 359.97438 * 23 18 15 40 40 H 1.09004 * 115.54701 * 148.94548 * 24 9 7 41 41 H 1.08999 * 117.49797 * 0.02562 * 25 24 9 42 42 H 1.08997 * 117.49450 * 145.01943 * 25 24 9 43 43 H 1.09004 * 117.49727 * 214.98066 * 26 24 9 44 44 H 1.08999 * 117.49836 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 3.0494 -1.2260 0.2894 9 7 1.3737 -2.3617 -0.3657 10 6 0.5768 -2.3787 -1.4524 11 8 0.4219 -1.3693 -2.1067 12 6 -0.1209 -3.6524 -1.8552 13 6 -0.9559 -3.4007 -3.1124 14 6 -1.6637 -4.6939 -3.5217 15 6 -2.4992 -4.4421 -4.7785 16 1 -1.8629 -4.0285 -5.5610 17 8 -3.5460 -3.5172 -4.4774 18 6 -3.0978 -5.7414 -5.2524 19 6 -4.2851 -6.1944 -4.7082 20 6 -4.8365 -7.3841 -5.1460 21 6 -4.1960 -8.1252 -6.1214 22 6 -3.0061 -7.6747 -6.6619 23 6 -2.4569 -6.4828 -6.2272 24 6 1.5613 -3.5811 0.4244 25 6 2.4161 -3.4789 1.6892 26 6 2.9618 -4.1965 0.4521 27 1 -0.4850 0.8367 0.0737 28 1 -0.7725 -3.9814 -1.0457 29 1 0.6211 -4.4238 -2.0607 30 1 -0.3040 -3.0720 -3.9217 31 1 -1.6980 -2.6291 -2.9072 32 1 -2.3156 -5.0231 -2.7125 33 1 -0.9215 -5.4652 -3.7269 34 1 -4.1523 -3.8202 -3.7876 35 1 -4.7834 -5.6175 -3.9431 36 1 -5.7663 -7.7360 -4.7240 37 1 -4.6254 -9.0559 -6.4615 38 1 -2.5055 -8.2539 -7.4236 39 1 -1.5273 -6.1309 -6.6495 40 1 0.7114 -4.2633 0.4450 41 1 2.8385 -2.5044 1.9338 42 1 2.1287 -4.0941 2.5419 43 1 3.0333 -5.2835 0.4915 44 1 3.7436 -3.6943 -0.1178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823520074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:10 Heat of formation + Delta-G solvation = -35.250164 kcal Electronic energy + Delta-G solvation = -24240.056059 eV Core-core repulsion = 20737.145397 eV Total energy + Delta-G solvation = -3502.910663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.81875 -38.55396 -37.21559 -36.06485 -33.69875 -32.62696 -31.63399 -31.03374 -30.80581 -28.34163 -25.39201 -23.88953 -22.77683 -21.75564 -21.47737 -20.99902 -20.85453 -18.91295 -17.66251 -16.44464 -16.06706 -15.96357 -15.82431 -15.23153 -14.89682 -14.62962 -14.26110 -14.01563 -13.82278 -13.71037 -13.54016 -13.08514 -12.83284 -12.57576 -12.05800 -11.82269 -11.64337 -11.49114 -11.27127 -11.14171 -11.01579 -10.87989 -10.81475 -10.55644 -10.49514 -10.19430 -10.06740 -10.00521 -9.87869 -9.69062 -9.12116 -8.88011 -8.63715 -7.90873 -6.95477 -6.05040 -3.80714 1.14174 1.19955 3.33890 3.40645 3.44191 3.56626 4.20610 4.31438 4.44142 4.48113 4.66800 4.77636 4.82505 4.88578 4.93499 5.10285 5.17553 5.29740 5.34494 5.36011 5.54269 5.61710 5.68052 5.76963 5.79231 5.83037 5.88564 5.94361 6.07881 6.13989 6.21769 6.24032 6.27632 6.30163 6.30849 6.44213 6.55994 6.74845 6.78954 6.81311 6.96071 6.97253 7.62669 7.67373 8.34339 9.14251 9.24639 9.74430 10.39253 11.04300 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.003023 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.378354 B = 9259.071608 C =10086.048440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.349 4.349 8 H 0.075 0.925 9 N -0.433 5.433 10 C 0.483 3.517 11 O -0.533 6.533 12 C -0.132 4.132 13 C -0.094 4.094 14 C -0.143 4.143 15 C 0.145 3.855 16 H 0.108 0.892 17 O -0.550 6.550 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.119 4.119 23 C -0.112 4.112 24 C 0.078 3.922 25 C -0.175 4.175 26 C -0.209 4.209 27 H 0.263 0.737 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.371 0.629 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 -16.482 -7.181 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.093 0.907 9 N -0.154 5.154 10 C 0.271 3.729 11 O -0.410 6.410 12 C -0.173 4.173 13 C -0.132 4.132 14 C -0.181 4.181 15 C 0.086 3.914 16 H 0.125 0.875 17 O -0.355 6.355 18 C -0.109 4.109 19 C -0.132 4.132 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.137 4.137 23 C -0.130 4.130 24 C -0.028 4.028 25 C -0.213 4.213 26 C -0.248 4.248 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.219 0.781 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.569 -15.452 -8.055 18.623 hybrid contribution 0.122 0.209 0.654 0.698 sum -6.447 -15.243 -7.401 18.130 Atomic orbital electron populations 1.69818 1.06500 1.27273 1.43195 1.25233 0.94822 0.99301 0.94322 0.86233 0.79249 0.82340 0.78295 1.20347 1.21330 1.19982 1.18826 0.94281 0.83903 1.50590 0.90728 1.42827 1.44421 1.06778 1.21422 1.19861 0.82729 0.89021 0.81277 1.90523 1.62423 1.35014 1.53050 1.21600 0.99171 0.98217 0.98272 1.21201 0.98994 0.95898 0.97110 1.22321 0.99561 0.99472 0.96762 1.20917 0.88021 0.85312 0.97124 0.87464 1.86667 1.42365 1.45557 1.60941 1.20742 0.95752 0.97646 0.96713 1.20912 0.95764 0.96469 1.00035 1.21120 0.99902 0.95056 0.97518 1.21149 0.95919 0.99915 0.97463 1.21149 0.96135 0.96395 1.00005 1.21031 0.99980 0.95078 0.96956 1.21668 0.92368 0.91722 0.97057 1.23064 1.04712 1.02414 0.91099 1.23317 0.99995 0.98335 1.03165 0.92679 0.91140 0.91167 0.91738 0.90616 0.91743 0.91189 0.78126 0.86138 0.86080 0.86234 0.86059 0.85815 0.88142 0.87538 0.89905 0.89912 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.14 11.74 55.50 0.65 -24.49 16 2 C 0.07 2.11 4.39 -17.47 -0.08 2.03 16 3 Si 0.91 22.35 29.59 -169.99 -5.03 17.32 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.35 -9.69 7.91 -14.93 -0.12 -9.81 16 8 H 0.08 2.02 7.27 -52.48 -0.38 1.63 16 9 N -0.43 -11.00 2.83 -107.72 -0.31 -11.30 16 10 C 0.48 12.36 6.96 -10.98 -0.08 12.29 16 11 O -0.53 -15.89 13.76 5.55 0.08 -15.81 16 12 C -0.13 -2.51 4.32 -27.88 -0.12 -2.63 16 13 C -0.09 -1.64 4.40 -26.73 -0.12 -1.76 16 14 C -0.14 -1.85 4.88 -26.73 -0.13 -1.98 16 15 C 0.15 1.79 3.21 -27.88 -0.09 1.70 16 16 H 0.11 1.36 8.05 -51.93 -0.42 0.94 16 17 O -0.55 -7.45 12.67 -35.23 -0.45 -7.90 16 18 C -0.11 -1.20 5.00 -104.62 -0.52 -1.72 16 19 C -0.11 -1.14 9.33 -39.58 -0.37 -1.51 16 20 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 23 C -0.11 -1.15 9.68 -39.58 -0.38 -1.53 16 24 C 0.08 1.58 5.87 -67.93 -0.40 1.18 16 25 C -0.18 -3.21 9.80 -26.69 -0.26 -3.47 16 26 C -0.21 -3.61 10.36 -26.69 -0.28 -3.89 16 27 H 0.26 7.61 8.32 -40.82 -0.34 7.27 16 28 H 0.07 1.26 7.56 -51.93 -0.39 0.87 16 29 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 30 H 0.06 1.20 8.10 -51.93 -0.42 0.77 16 31 H 0.08 1.52 7.78 -51.93 -0.40 1.12 16 32 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.37 3.77 7.40 45.56 0.34 4.11 16 35 H 0.12 1.01 6.62 -52.48 -0.35 0.66 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.10 1.81 6.96 -51.93 -0.36 1.45 16 41 H 0.11 2.17 6.73 -51.93 -0.35 1.82 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -34.65 364.01 -9.80 -44.46 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.10 Total: 7.79 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -4.14 Total: -15.55 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.35 Total: -35.79 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.37 Total: -23.71 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.65 -9.80 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823520074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.207 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds