Wall clock time and date at job start Tue Mar 31 2020 08:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99798 * 2 1 4 4 H 1.48493 * 109.47077 * 270.00108 * 3 2 1 5 5 H 1.48507 * 109.46860 * 29.99937 * 3 2 1 6 6 H 1.48498 * 109.46869 * 149.99626 * 3 2 1 7 7 C 1.38943 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00599 * 197.99150 * 7 2 1 9 9 N 1.37100 * 119.99757 * 17.99012 * 7 2 1 10 10 C 1.34777 * 120.00083 * 44.48812 * 9 7 2 11 11 O 1.21286 * 119.99860 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99693 * 179.97438 * 10 9 7 13 13 C 1.53001 * 109.46641 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47001 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47196 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.47324 * 55.00148 * 15 14 13 17 17 O 1.42896 * 109.47652 * 295.00292 * 15 14 13 18 18 C 1.50701 * 109.47329 * 174.99873 * 15 14 13 19 19 C 1.38239 * 119.99486 * 84.73180 * 18 15 14 20 20 C 1.38240 * 119.99730 * 179.78971 * 19 18 15 21 21 C 1.38237 * 119.99813 * 0.43987 * 20 19 18 22 22 C 1.38234 * 120.00243 * 359.81285 * 21 20 19 23 23 C 1.38230 * 120.00163 * 265.00325 * 18 15 14 24 24 C 1.46505 * 119.99767 * 224.48882 * 9 7 2 25 25 C 1.53000 * 117.50016 * 3.27282 * 24 9 7 26 26 C 1.53000 * 117.50008 * 294.61172 * 24 9 7 27 27 H 0.96995 * 120.00129 * 354.96689 * 1 2 3 28 28 H 1.08997 * 109.47034 * 60.00210 * 12 10 9 29 29 H 1.08992 * 109.47002 * 299.99914 * 12 10 9 30 30 H 1.08997 * 109.47326 * 60.00278 * 13 12 10 31 31 H 1.09003 * 109.46967 * 300.00003 * 13 12 10 32 32 H 1.09008 * 109.47295 * 60.00111 * 14 13 12 33 33 H 1.08992 * 109.47576 * 300.00224 * 14 13 12 34 34 H 0.96707 * 114.00224 * 300.00377 * 17 15 14 35 35 H 1.08006 * 120.00469 * 359.97438 * 19 18 15 36 36 H 1.08000 * 120.00203 * 180.26692 * 20 19 18 37 37 H 1.07996 * 119.99888 * 179.83402 * 21 20 19 38 38 H 1.07996 * 120.00052 * 179.97438 * 22 21 20 39 39 H 1.07993 * 120.00303 * 359.97438 * 23 18 15 40 40 H 1.09004 * 115.54701 * 148.94548 * 24 9 7 41 41 H 1.08999 * 117.49797 * 0.02562 * 25 24 9 42 42 H 1.08997 * 117.49450 * 145.01943 * 25 24 9 43 43 H 1.09004 * 117.49727 * 214.98066 * 26 24 9 44 44 H 1.08999 * 117.49836 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 3.0494 -1.2260 0.2894 9 7 1.3737 -2.3617 -0.3657 10 6 0.5768 -2.3787 -1.4524 11 8 0.4219 -1.3693 -2.1067 12 6 -0.1209 -3.6524 -1.8552 13 6 -0.9559 -3.4007 -3.1124 14 6 -1.6637 -4.6939 -3.5217 15 6 -2.4992 -4.4421 -4.7785 16 1 -1.8629 -4.0285 -5.5610 17 8 -3.5460 -3.5172 -4.4774 18 6 -3.0978 -5.7414 -5.2524 19 6 -4.2851 -6.1944 -4.7082 20 6 -4.8365 -7.3841 -5.1460 21 6 -4.1960 -8.1252 -6.1214 22 6 -3.0061 -7.6747 -6.6619 23 6 -2.4569 -6.4828 -6.2272 24 6 1.5613 -3.5811 0.4244 25 6 2.4161 -3.4789 1.6892 26 6 2.9618 -4.1965 0.4521 27 1 -0.4850 0.8367 0.0737 28 1 -0.7725 -3.9814 -1.0457 29 1 0.6211 -4.4238 -2.0607 30 1 -0.3040 -3.0720 -3.9217 31 1 -1.6980 -2.6291 -2.9072 32 1 -2.3156 -5.0231 -2.7125 33 1 -0.9215 -5.4652 -3.7269 34 1 -4.1523 -3.8202 -3.7876 35 1 -4.7834 -5.6175 -3.9431 36 1 -5.7663 -7.7360 -4.7240 37 1 -4.6254 -9.0559 -6.4615 38 1 -2.5055 -8.2539 -7.4236 39 1 -1.5273 -6.1309 -6.6495 40 1 0.7114 -4.2633 0.4450 41 1 2.8385 -2.5044 1.9338 42 1 2.1287 -4.0941 2.5419 43 1 3.0333 -5.2835 0.4915 44 1 3.7436 -3.6943 -0.1178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823520074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:09 Heat of formation + Delta-G solvation = -56.886385 kcal Electronic energy + Delta-G solvation = -24240.994276 eV Core-core repulsion = 20737.145397 eV Total energy + Delta-G solvation = -3503.848880 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66972 -40.31395 -38.21340 -37.71128 -35.21582 -34.46373 -32.87032 -32.42948 -31.71575 -29.63936 -27.11341 -25.24275 -23.48302 -23.17927 -22.84520 -22.45711 -21.85430 -20.74228 -18.53427 -18.19113 -17.78120 -17.05610 -16.84487 -16.59679 -16.29498 -15.98002 -15.80302 -15.41037 -15.05107 -14.87186 -14.49646 -14.26206 -14.13345 -13.85006 -13.76197 -13.07351 -13.00248 -12.87840 -12.71770 -12.64483 -12.42331 -12.35728 -12.19979 -12.06004 -11.93449 -11.73142 -11.64544 -11.53471 -11.19725 -10.96939 -10.70606 -9.90863 -9.80970 -9.61254 -8.94292 -8.18967 -5.97276 0.42384 0.51127 1.33817 1.42655 1.47151 2.26984 2.45118 2.84849 3.10549 3.15308 3.38716 3.55382 3.61470 3.93695 4.01104 4.08413 4.12987 4.16036 4.20513 4.29908 4.31752 4.38463 4.49550 4.52364 4.64358 4.69037 4.78423 4.85094 4.90775 4.92116 4.97915 5.09091 5.11524 5.17125 5.31212 5.35442 5.46999 5.50352 5.53190 5.57725 5.63411 5.69246 6.12000 6.22155 6.77499 7.06495 7.24908 7.74612 8.42011 8.89854 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.003023 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.378354 B = 9259.071608 C =10086.048440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.020 3.980 3 Si 0.968 3.032 4 H -0.292 1.292 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.356 4.356 8 H 0.075 0.925 9 N -0.450 5.450 10 C 0.463 3.537 11 O -0.591 6.591 12 C -0.117 4.117 13 C -0.084 4.084 14 C -0.127 4.127 15 C 0.149 3.851 16 H 0.096 0.904 17 O -0.572 6.572 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.129 4.129 22 C -0.125 4.125 23 C -0.126 4.126 24 C 0.046 3.954 25 C -0.174 4.174 26 C -0.180 4.180 27 H 0.258 0.742 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.384 0.616 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 -19.721 -6.801 21.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.186 4.186 3 Si 0.793 3.207 4 H -0.219 1.219 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.484 4.484 8 H 0.092 0.908 9 N -0.171 5.171 10 C 0.253 3.747 11 O -0.473 6.473 12 C -0.157 4.157 13 C -0.123 4.123 14 C -0.165 4.165 15 C 0.090 3.910 16 H 0.114 0.886 17 O -0.380 6.380 18 C -0.123 4.123 19 C -0.143 4.143 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.059 4.059 25 C -0.211 4.211 26 C -0.218 4.218 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.233 0.767 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.407 -18.734 -7.629 21.219 hybrid contribution 0.122 1.128 0.528 1.252 sum -6.285 -17.606 -7.101 19.998 Atomic orbital electron populations 1.69930 1.07942 1.27437 1.45494 1.26056 0.95551 1.02583 0.94415 0.85349 0.79097 0.78766 0.77468 1.21933 1.20573 1.17723 1.19073 0.94508 0.85358 1.49424 0.90766 1.43099 1.44014 1.07846 1.22123 1.21004 0.82486 0.90485 0.80725 1.90478 1.64372 1.37580 1.54856 1.21527 0.99634 0.95426 0.99121 1.21063 0.97826 0.97422 0.95960 1.22173 0.99806 0.96994 0.97499 1.20811 0.87696 0.85980 0.96553 0.88619 1.86628 1.43023 1.46669 1.61676 1.20606 0.96661 0.97113 0.97904 1.21141 0.95581 0.97152 1.00470 1.21436 1.00654 0.94644 0.97515 1.21520 0.95626 1.00646 0.96877 1.21447 0.96421 0.96100 1.00318 1.21235 1.00494 0.95682 0.97040 1.22011 0.95002 0.90594 0.98245 1.23118 1.03847 1.02013 0.92129 1.23328 0.96860 1.00455 1.01177 0.93303 0.89453 0.88166 0.93719 0.94163 0.90312 0.89431 0.76666 0.85081 0.84026 0.83870 0.84037 0.85226 0.85538 0.90351 0.86434 0.85570 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.60 11.74 21.66 0.25 -54.34 16 2 C 0.02 1.16 4.39 84.92 0.37 1.54 16 3 Si 0.97 47.14 29.59 68.60 2.03 49.17 16 4 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.25 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.36 -20.15 7.91 84.04 0.66 -19.48 16 8 H 0.07 4.08 7.27 -2.91 -0.02 4.06 16 9 N -0.45 -22.99 2.83 -613.11 -1.74 -24.72 16 10 C 0.46 24.17 6.96 87.66 0.61 24.78 16 11 O -0.59 -36.94 13.76 -3.05 -0.04 -36.99 16 12 C -0.12 -4.36 4.32 29.85 0.13 -4.23 16 13 C -0.08 -3.00 4.40 30.59 0.13 -2.87 16 14 C -0.13 -3.13 4.88 30.59 0.15 -2.98 16 15 C 0.15 3.65 3.21 29.85 0.10 3.74 16 16 H 0.10 2.50 8.05 -2.39 -0.02 2.48 16 17 O -0.57 -15.79 12.67 -148.98 -1.89 -17.68 16 18 C -0.12 -2.57 5.00 -19.87 -0.10 -2.67 16 19 C -0.13 -2.32 9.33 22.27 0.21 -2.11 16 20 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 21 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 22 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 23 C -0.13 -2.41 9.68 22.27 0.22 -2.20 16 24 C 0.05 1.78 5.87 44.99 0.26 2.05 16 25 C -0.17 -5.95 9.80 30.62 0.30 -5.65 16 26 C -0.18 -5.62 10.36 30.62 0.32 -5.31 16 27 H 0.26 15.59 8.32 -92.71 -0.77 14.82 16 28 H 0.09 2.96 7.56 -2.39 -0.02 2.95 16 29 H 0.10 3.13 8.11 -2.39 -0.02 3.11 16 30 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.04 1.70 7.78 -2.39 -0.02 1.68 16 32 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.38 7.80 7.40 -74.05 -0.55 7.26 16 35 H 0.13 2.00 6.62 -2.91 -0.02 1.98 16 36 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.13 4.15 6.96 -2.38 -0.02 4.13 16 41 H 0.08 3.15 6.73 -2.39 -0.02 3.13 16 42 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.13 2.91 8.14 -2.38 -0.02 2.89 16 44 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -79.36 364.01 3.09 -76.27 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.44 Total: 28.85 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 4.03 Total: -20.56 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -1.48 Total: -79.07 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -1.93 Total: -54.66 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -79.36 3.09 -76.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823520074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.380 kcal (2) G-P(sol) polarization free energy of solvation -79.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds