Wall clock time and date at job start Tue Mar 31 2020 08:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00173 * 2 1 4 4 H 1.48501 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47094 * 300.00272 * 3 2 1 6 6 H 1.48505 * 109.47161 * 60.00353 * 3 2 1 7 7 C 1.37884 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99855 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47283 * 174.87725 * 9 7 2 11 11 H 1.09003 * 109.46754 * 54.21194 * 10 9 7 12 12 N 1.46499 * 109.47230 * 174.20682 * 10 9 7 13 13 C 1.34777 * 120.00117 * 278.64704 * 12 10 9 14 14 O 1.21504 * 120.00138 * 355.06096 * 13 12 10 15 15 O 1.34638 * 119.99688 * 175.04972 * 13 12 10 16 16 C 1.45198 * 117.00006 * 180.02562 * 15 13 12 17 17 C 1.54968 * 110.92243 * 96.54229 * 16 15 13 18 18 C 1.54267 * 104.15867 * 156.29869 * 17 16 15 19 19 C 1.53874 * 106.64002 * 336.44308 * 18 17 16 20 20 C 1.54268 * 106.60221 * 359.97438 * 19 18 17 21 21 C 1.50700 * 109.47589 * 294.21461 * 10 9 7 22 22 C 1.38242 * 119.99533 * 279.72405 * 21 10 9 23 23 C 1.38231 * 119.99757 * 179.80604 * 22 21 10 24 24 C 1.38238 * 119.99795 * 0.39986 * 23 22 21 25 25 C 1.38227 * 120.00314 * 359.85282 * 24 23 22 26 26 C 1.38232 * 120.00330 * 99.99532 * 21 10 9 27 27 H 0.97000 * 119.99974 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47363 * 54.88397 * 9 7 2 29 29 H 1.08996 * 109.47698 * 294.88263 * 9 7 2 30 30 H 0.97002 * 119.99619 * 98.65764 * 12 10 9 31 31 H 1.09008 * 110.67219 * 333.23895 * 16 15 13 32 32 H 1.08997 * 110.47681 * 37.64635 * 17 16 15 33 33 H 1.08995 * 110.52787 * 274.97699 * 17 16 15 34 34 H 1.09003 * 110.02837 * 217.13982 * 18 17 16 35 35 H 1.08997 * 110.03358 * 95.75073 * 18 17 16 36 36 H 1.09004 * 110.03008 * 119.25974 * 19 18 17 37 37 H 1.09000 * 110.03498 * 240.64266 * 19 18 17 38 38 H 1.08990 * 110.48797 * 142.28497 * 20 19 18 39 39 H 1.09004 * 110.48322 * 264.93192 * 20 19 18 40 40 H 1.07998 * 119.99631 * 359.97438 * 22 21 10 41 41 H 1.07995 * 119.99893 * 180.22639 * 23 22 21 42 42 H 1.08000 * 119.99663 * 179.83135 * 24 23 22 43 43 H 1.08004 * 120.00267 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.99756 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2401 -3.6592 -0.1300 11 1 2.9959 -3.5811 0.6516 12 7 1.5238 -4.9296 0.0087 13 6 1.2212 -5.4024 1.2340 14 8 1.6198 -4.8224 2.2245 15 8 0.4770 -6.5172 1.3604 16 6 0.1896 -6.9684 2.7103 17 6 -1.2010 -6.4681 3.1767 18 6 -1.6134 -7.4696 4.2752 19 6 -0.8301 -8.7663 4.0059 20 6 0.0312 -8.5087 2.7522 21 6 2.9065 -3.6030 -1.4805 22 6 2.2507 -4.0902 -2.5956 23 6 2.8603 -4.0350 -3.8350 24 6 4.1290 -3.5001 -3.9580 25 6 4.7869 -3.0177 -2.8421 26 6 4.1758 -3.0694 -1.6033 27 1 -0.4850 0.8400 0.0004 28 1 0.5570 -2.5181 -0.8409 29 1 0.6952 -2.5979 0.9319 30 1 1.2674 -5.4305 -0.7815 31 1 0.9682 -6.6411 3.3994 32 1 -1.9120 -6.4935 2.3509 33 1 -1.1271 -5.4610 3.5868 34 1 -2.6848 -7.6626 4.2213 35 1 -1.3544 -7.0741 5.2573 36 1 -0.1902 -8.9996 4.8570 37 1 -1.5213 -9.5888 3.8222 38 1 1.0042 -8.9895 2.8524 39 1 -0.4808 -8.8642 1.8580 40 1 1.2610 -4.5115 -2.4988 41 1 2.3464 -4.4123 -4.7067 42 1 4.6064 -3.4595 -4.9259 43 1 5.7783 -2.6002 -2.9381 44 1 4.6897 -2.6924 -0.7314 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830923607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:40 Heat of formation + Delta-G solvation = -75.542577 kcal Electronic energy + Delta-G solvation = -24633.463301 eV Core-core repulsion = 21128.805428 eV Total energy + Delta-G solvation = -3504.657873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23640 -39.03183 -37.79143 -35.80145 -34.84186 -32.83501 -31.10308 -30.43492 -28.85241 -28.67416 -27.96415 -24.94032 -22.41908 -22.27758 -21.63967 -20.48530 -20.33036 -19.62218 -18.66720 -16.78385 -16.52488 -16.10745 -15.77148 -15.43339 -14.91798 -14.78056 -14.51702 -14.28075 -13.69795 -13.49923 -13.07070 -12.93061 -12.75012 -12.62890 -12.40781 -12.16538 -12.02598 -11.53391 -11.41910 -11.27426 -11.16000 -10.87288 -10.72964 -10.69384 -10.62392 -10.55478 -10.23800 -10.04822 -10.01541 -9.93881 -9.16446 -8.61693 -8.47721 -8.35008 -8.07149 -5.99804 -4.01258 1.79061 1.84744 2.59582 3.32574 3.33604 3.39997 3.43708 4.23654 4.42526 4.44044 4.48967 4.57602 4.86285 5.21736 5.25855 5.28406 5.30104 5.36495 5.36784 5.38597 5.47318 5.48034 5.51802 5.73023 5.76473 5.90435 5.90633 5.94949 5.98648 6.12699 6.18309 6.20716 6.36960 6.48500 6.64275 6.73522 6.85508 6.85861 6.90125 7.13548 7.42396 7.61660 7.67841 7.95806 7.98897 8.34826 8.83935 9.02991 9.61668 11.12033 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004219 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.937047 B = 6634.771772 C = 8342.996618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.197 3.803 11 H 0.089 0.911 12 N -0.702 5.702 13 C 0.645 3.355 14 O -0.567 6.567 15 O -0.368 6.368 16 C 0.101 3.899 17 C -0.142 4.142 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.049 4.049 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.133 4.133 25 C -0.121 4.121 26 C -0.096 4.096 27 H 0.260 0.740 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.397 0.603 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 -16.214 -0.279 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.096 3.904 11 H 0.107 0.893 12 N -0.360 5.360 13 C 0.397 3.603 14 O -0.455 6.455 15 O -0.283 6.283 16 C 0.044 3.956 17 C -0.180 4.180 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.049 4.049 22 C -0.136 4.136 23 C -0.139 4.139 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.114 4.114 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.232 0.768 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.551 -15.843 0.282 15.921 hybrid contribution 0.158 0.990 -0.379 1.072 sum 1.709 -14.852 -0.097 14.951 Atomic orbital electron populations 1.69975 1.06055 1.26480 1.50758 1.24944 0.94784 0.99144 0.95239 0.86547 0.80197 0.83861 0.77511 1.19616 1.21083 1.21036 1.21061 0.93039 0.90246 1.50622 0.92252 1.19479 0.93632 0.90408 0.98075 1.20351 0.95096 0.81632 0.93343 0.89311 1.45090 1.61010 1.24904 1.05018 1.18099 0.77870 0.79406 0.84883 1.90984 1.57364 1.60119 1.37009 1.86251 1.66800 1.42197 1.33064 1.23681 0.97653 0.93700 0.80519 1.22768 0.96321 0.99914 0.98998 1.22038 1.00193 0.94894 0.98829 1.22065 0.98492 0.97990 0.97352 1.22443 1.00715 0.93563 0.99104 1.19827 0.93787 0.96514 0.94795 1.20860 0.99375 1.00915 0.92472 1.20978 0.95448 1.00487 0.96979 1.20993 0.95542 1.00445 0.98155 1.21037 0.99835 1.00213 0.92814 1.20959 0.94389 0.98336 0.97758 0.93073 0.95676 0.95655 0.76795 0.88691 0.90497 0.90500 0.91340 0.91407 0.91432 0.91229 0.90906 0.90293 0.86579 0.86632 0.86814 0.86536 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.22 8.53 -34.44 -0.29 -14.51 16 8 H 0.06 1.59 6.79 -52.49 -0.36 1.23 16 9 C 0.02 0.57 4.68 -27.89 -0.13 0.44 16 10 C 0.20 4.14 2.19 -69.08 -0.15 3.99 16 11 H 0.09 1.99 7.49 -51.93 -0.39 1.60 16 12 N -0.70 -12.92 5.05 -59.87 -0.30 -13.22 16 13 C 0.65 12.59 8.61 54.06 0.47 13.05 16 14 O -0.57 -12.92 15.28 -19.27 -0.29 -13.21 16 15 O -0.37 -6.07 10.08 -40.32 -0.41 -6.47 16 16 C 0.10 1.40 3.27 -24.69 -0.08 1.32 16 17 C -0.14 -1.83 6.58 -25.03 -0.16 -2.00 16 18 C -0.12 -1.18 6.80 -25.61 -0.17 -1.35 16 19 C -0.12 -1.04 6.80 -25.61 -0.17 -1.21 16 20 C -0.12 -1.24 6.57 -25.07 -0.16 -1.40 16 21 C -0.05 -0.91 4.50 -104.62 -0.47 -1.38 16 22 C -0.12 -1.96 9.02 -39.58 -0.36 -2.32 16 23 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 24 C -0.13 -1.91 10.05 -39.59 -0.40 -2.30 16 25 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 26 C -0.10 -1.70 8.83 -39.58 -0.35 -2.05 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 30 H 0.40 6.16 6.97 -40.82 -0.28 5.88 16 31 H 0.10 1.44 7.13 -51.92 -0.37 1.07 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.12 1.77 6.95 -52.49 -0.36 1.40 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 44 H 0.12 2.12 7.84 -52.49 -0.41 1.71 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -32.66 363.55 -9.95 -42.61 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.80 Total: 6.74 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -3.34 Total: -12.53 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.43 Total: -39.45 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.70 Total: -19.68 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.66 -9.95 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830923607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.930 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds