Wall clock time and date at job start Tue Mar 31 2020 08:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00173 * 2 1 4 4 H 1.48501 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47094 * 300.00272 * 3 2 1 6 6 H 1.48505 * 109.47161 * 60.00353 * 3 2 1 7 7 C 1.37884 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99855 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47283 * 174.87725 * 9 7 2 11 11 H 1.09003 * 109.46754 * 54.21194 * 10 9 7 12 12 N 1.46499 * 109.47230 * 174.20682 * 10 9 7 13 13 C 1.34777 * 120.00117 * 278.64704 * 12 10 9 14 14 O 1.21504 * 120.00138 * 355.06096 * 13 12 10 15 15 O 1.34638 * 119.99688 * 175.04972 * 13 12 10 16 16 C 1.45198 * 117.00006 * 180.02562 * 15 13 12 17 17 C 1.54968 * 110.92243 * 96.54229 * 16 15 13 18 18 C 1.54267 * 104.15867 * 156.29869 * 17 16 15 19 19 C 1.53874 * 106.64002 * 336.44308 * 18 17 16 20 20 C 1.54268 * 106.60221 * 359.97438 * 19 18 17 21 21 C 1.50700 * 109.47589 * 294.21461 * 10 9 7 22 22 C 1.38242 * 119.99533 * 279.72405 * 21 10 9 23 23 C 1.38231 * 119.99757 * 179.80604 * 22 21 10 24 24 C 1.38238 * 119.99795 * 0.39986 * 23 22 21 25 25 C 1.38227 * 120.00314 * 359.85282 * 24 23 22 26 26 C 1.38232 * 120.00330 * 99.99532 * 21 10 9 27 27 H 0.97000 * 119.99974 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47363 * 54.88397 * 9 7 2 29 29 H 1.08996 * 109.47698 * 294.88263 * 9 7 2 30 30 H 0.97002 * 119.99619 * 98.65764 * 12 10 9 31 31 H 1.09008 * 110.67219 * 333.23895 * 16 15 13 32 32 H 1.08997 * 110.47681 * 37.64635 * 17 16 15 33 33 H 1.08995 * 110.52787 * 274.97699 * 17 16 15 34 34 H 1.09003 * 110.02837 * 217.13982 * 18 17 16 35 35 H 1.08997 * 110.03358 * 95.75073 * 18 17 16 36 36 H 1.09004 * 110.03008 * 119.25974 * 19 18 17 37 37 H 1.09000 * 110.03498 * 240.64266 * 19 18 17 38 38 H 1.08990 * 110.48797 * 142.28497 * 20 19 18 39 39 H 1.09004 * 110.48322 * 264.93192 * 20 19 18 40 40 H 1.07998 * 119.99631 * 359.97438 * 22 21 10 41 41 H 1.07995 * 119.99893 * 180.22639 * 23 22 21 42 42 H 1.08000 * 119.99663 * 179.83135 * 24 23 22 43 43 H 1.08004 * 120.00267 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.99756 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2401 -3.6592 -0.1300 11 1 2.9959 -3.5811 0.6516 12 7 1.5238 -4.9296 0.0087 13 6 1.2212 -5.4024 1.2340 14 8 1.6198 -4.8224 2.2245 15 8 0.4770 -6.5172 1.3604 16 6 0.1896 -6.9684 2.7103 17 6 -1.2010 -6.4681 3.1767 18 6 -1.6134 -7.4696 4.2752 19 6 -0.8301 -8.7663 4.0059 20 6 0.0312 -8.5087 2.7522 21 6 2.9065 -3.6030 -1.4805 22 6 2.2507 -4.0902 -2.5956 23 6 2.8603 -4.0350 -3.8350 24 6 4.1290 -3.5001 -3.9580 25 6 4.7869 -3.0177 -2.8421 26 6 4.1758 -3.0694 -1.6033 27 1 -0.4850 0.8400 0.0004 28 1 0.5570 -2.5181 -0.8409 29 1 0.6952 -2.5979 0.9319 30 1 1.2674 -5.4305 -0.7815 31 1 0.9682 -6.6411 3.3994 32 1 -1.9120 -6.4935 2.3509 33 1 -1.1271 -5.4610 3.5868 34 1 -2.6848 -7.6626 4.2213 35 1 -1.3544 -7.0741 5.2573 36 1 -0.1902 -8.9996 4.8570 37 1 -1.5213 -9.5888 3.8222 38 1 1.0042 -8.9895 2.8524 39 1 -0.4808 -8.8642 1.8580 40 1 1.2610 -4.5115 -2.4988 41 1 2.3464 -4.4123 -4.7067 42 1 4.6064 -3.4595 -4.9259 43 1 5.7783 -2.6002 -2.9381 44 1 4.6897 -2.6924 -0.7314 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830923607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:40 Heat of formation + Delta-G solvation = -94.635590 kcal Electronic energy + Delta-G solvation = -24634.291236 eV Core-core repulsion = 21128.805428 eV Total energy + Delta-G solvation = -3505.485808 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73535 -40.34147 -38.96287 -37.13813 -36.45283 -34.92279 -32.66070 -31.67395 -30.41379 -29.74812 -29.04068 -26.77247 -24.13142 -23.72435 -22.92152 -21.56698 -21.30589 -21.19028 -20.12168 -18.69497 -17.90729 -17.55191 -17.17373 -16.62558 -16.53414 -16.25923 -16.03560 -15.51961 -15.12828 -14.74008 -14.42225 -14.29671 -14.16813 -14.02334 -13.92502 -13.47126 -13.32991 -13.14676 -12.96008 -12.65011 -12.57733 -12.21377 -12.15102 -12.01957 -11.90335 -11.84182 -11.73570 -11.66148 -11.34689 -11.30195 -11.28263 -10.58946 -10.22242 -9.70663 -9.48655 -8.20873 -6.29941 0.50526 0.60698 1.16347 1.38130 1.39062 1.51791 1.73778 2.40070 2.97110 3.14357 3.20851 3.49900 3.58099 3.78759 3.91807 4.02983 4.20659 4.24137 4.35243 4.42061 4.43111 4.47232 4.50314 4.67792 4.70368 4.72717 4.80681 4.83055 4.89073 5.01977 5.09873 5.14194 5.16423 5.19595 5.24889 5.41389 5.42859 5.45289 5.55313 5.64729 5.69357 5.73404 5.86430 6.16847 6.21616 6.41191 6.81971 7.30110 7.37759 8.92210 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004219 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.937047 B = 6634.771772 C = 8342.996618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.036 3.964 10 C 0.215 3.785 11 H 0.067 0.933 12 N -0.692 5.692 13 C 0.644 3.356 14 O -0.606 6.606 15 O -0.361 6.361 16 C 0.084 3.916 17 C -0.146 4.146 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.075 4.075 22 C -0.130 4.130 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.118 4.118 27 H 0.262 0.738 28 H 0.004 0.996 29 H -0.022 1.022 30 H 0.413 0.587 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.122 0.878 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -17.410 -2.076 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.085 0.915 9 C -0.002 4.002 10 C 0.112 3.888 11 H 0.085 0.915 12 N -0.351 5.351 13 C 0.397 3.603 14 O -0.497 6.497 15 O -0.275 6.275 16 C 0.028 3.972 17 C -0.184 4.184 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.076 4.076 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.136 4.136 27 H 0.071 0.929 28 H 0.022 0.978 29 H -0.003 1.003 30 H 0.250 0.750 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.140 0.860 41 H 0.166 0.834 42 H 0.170 0.830 43 H 0.162 0.838 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.575 -17.084 -1.533 17.345 hybrid contribution -0.187 1.313 0.158 1.335 sum 2.388 -15.772 -1.375 16.011 Atomic orbital electron populations 1.70115 1.07838 1.27551 1.51938 1.25886 0.95646 1.03123 0.94793 0.85459 0.79426 0.78981 0.77639 1.18141 1.20205 1.20827 1.21426 0.93552 0.91114 1.49946 0.91536 1.19226 0.93872 0.92559 0.94571 1.19814 0.93302 0.80821 0.94876 0.91464 1.44892 1.60518 1.24216 1.05455 1.18280 0.77686 0.79793 0.84577 1.90949 1.58927 1.61485 1.38369 1.86269 1.65751 1.40552 1.34891 1.24123 0.97525 0.96636 0.78903 1.22795 0.95883 0.99575 1.00146 1.22042 1.01469 0.94483 0.97418 1.22089 0.98587 0.97791 0.96729 1.22484 1.01973 0.89945 1.00510 1.19667 0.94833 0.99287 0.93774 1.21049 0.99803 1.01058 0.92875 1.21388 0.95775 0.99524 0.96976 1.21480 0.95140 0.98346 0.99366 1.21379 1.00964 0.99660 0.91963 1.21078 0.94398 0.99179 0.98982 0.92916 0.97813 1.00349 0.74983 0.90520 0.90648 0.93395 0.89612 0.91137 0.90205 0.88832 0.89786 0.89548 0.85973 0.83354 0.83047 0.83795 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.52 -30.12 8.53 25.60 0.22 -29.90 16 8 H 0.07 3.66 6.79 -2.91 -0.02 3.64 16 9 C 0.04 1.98 4.68 29.85 0.14 2.12 16 10 C 0.21 9.54 2.19 44.24 0.10 9.63 16 11 H 0.07 3.24 7.49 -2.39 -0.02 3.22 16 12 N -0.69 -26.84 5.05 -573.73 -2.90 -29.74 16 13 C 0.64 26.69 8.61 129.79 1.12 27.80 16 14 O -0.61 -29.77 15.28 19.83 0.30 -29.47 16 15 O -0.36 -12.35 10.08 -55.47 -0.56 -12.91 16 16 C 0.08 2.40 3.27 31.92 0.10 2.51 16 17 C -0.15 -3.93 6.58 31.70 0.21 -3.72 16 18 C -0.12 -2.13 6.80 31.32 0.21 -1.91 16 19 C -0.11 -1.68 6.80 31.32 0.21 -1.47 16 20 C -0.11 -2.13 6.57 31.67 0.21 -1.93 16 21 C -0.07 -2.86 4.50 -19.86 -0.09 -2.94 16 22 C -0.13 -4.21 9.02 22.27 0.20 -4.01 16 23 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 24 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 25 C -0.12 -3.43 10.05 22.27 0.22 -3.21 16 26 C -0.12 -4.16 8.83 22.27 0.20 -3.96 16 27 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 28 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 29 H -0.02 -1.38 8.08 -2.39 -0.02 -1.40 16 30 H 0.41 13.21 6.97 -92.71 -0.65 12.56 16 31 H 0.08 2.49 7.13 -2.38 -0.02 2.47 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.12 3.68 6.95 -2.91 -0.02 3.66 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 42 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 43 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.11 4.07 7.84 -2.91 -0.02 4.05 16 Total: -1.00 -74.95 363.55 3.46 -71.50 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.34 Total: 27.42 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 3.96 Total: -16.16 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.61 Total: -87.73 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.26 Total: -42.38 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.95 3.46 -71.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830923607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.139 kcal (2) G-P(sol) polarization free energy of solvation -74.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds