Wall clock time and date at job start Tue Mar 31 2020 08:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00431 * 2 1 4 4 H 1.48497 * 109.47289 * 269.99648 * 3 2 1 5 5 H 1.48509 * 109.47123 * 29.99322 * 3 2 1 6 6 H 1.48500 * 109.47521 * 149.99462 * 3 2 1 7 7 C 1.37877 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00192 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00360 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47118 * 175.19890 * 9 7 2 11 11 C 1.46903 * 110.99499 * 75.79300 * 10 9 7 12 12 C 1.50707 * 109.46409 * 189.99601 * 11 10 9 13 13 C 1.38252 * 120.00339 * 259.99767 * 12 11 10 14 14 C 1.38209 * 120.00467 * 180.02562 * 13 12 11 15 15 C 1.38258 * 119.99558 * 359.97438 * 14 13 12 16 16 C 1.38204 * 120.00305 * 0.04638 * 15 14 13 17 17 C 1.38214 * 119.99806 * 80.02283 * 12 11 10 18 18 C 1.50694 * 120.00295 * 359.97438 * 17 12 11 19 19 C 1.50703 * 109.47679 * 84.99915 * 18 17 12 20 20 O 1.20827 * 119.99651 * 359.97438 * 19 18 17 21 21 O 1.34230 * 120.00248 * 180.02562 * 19 18 17 22 22 C 1.46899 * 110.99566 * 199.74359 * 10 9 7 23 23 C 1.52994 * 109.47137 * 71.81090 * 22 10 9 24 24 C 1.53003 * 117.49661 * 244.18539 * 23 22 10 25 25 C 1.53006 * 117.49836 * 175.52390 * 23 22 10 26 26 H 0.96999 * 119.99533 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46702 * 55.19980 * 9 7 2 28 28 H 1.09000 * 109.46822 * 295.20182 * 9 7 2 29 29 H 1.08998 * 109.47226 * 70.00064 * 11 10 9 30 30 H 1.08995 * 109.47134 * 309.98949 * 11 10 9 31 31 H 1.08011 * 119.99372 * 0.02562 * 13 12 11 32 32 H 1.07997 * 120.00065 * 179.69873 * 14 13 12 33 33 H 1.08002 * 119.99429 * 180.02562 * 15 14 13 34 34 H 1.08002 * 120.00396 * 179.97438 * 16 15 14 35 35 H 1.09004 * 109.47775 * 205.00103 * 18 17 12 36 36 H 1.09009 * 109.47150 * 324.99755 * 18 17 12 37 37 H 0.96697 * 116.99961 * 179.97438 * 21 19 18 38 38 H 1.09004 * 109.46863 * 191.81156 * 22 10 9 39 39 H 1.08999 * 109.47129 * 311.80985 * 22 10 9 40 40 H 1.09000 * 115.55163 * 29.85500 * 23 22 10 41 41 H 1.08994 * 117.49783 * 359.97438 * 24 23 22 42 42 H 1.08998 * 117.49736 * 145.02424 * 24 23 22 43 43 H 1.09000 * 117.49815 * 214.97630 * 25 23 22 44 44 H 1.09002 * 117.49629 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4993 0.0005 10 7 2.2014 -3.6134 -0.1148 11 6 2.8933 -3.8490 1.1595 12 6 4.0238 -4.8222 0.9447 13 6 3.8620 -6.1542 1.2778 14 6 4.8989 -7.0466 1.0813 15 6 6.0978 -6.6073 0.5510 16 6 6.2597 -5.2757 0.2184 17 6 5.2225 -4.3830 0.4151 18 6 5.3989 -2.9311 0.0519 19 6 5.8202 -2.1553 1.2732 20 8 5.9622 -2.7230 2.3303 21 8 6.0368 -0.8334 1.1870 22 6 1.5287 -4.8329 -0.5819 23 6 1.1624 -4.6791 -2.0594 24 6 -0.3241 -4.6751 -2.4220 25 6 0.5442 -5.8887 -2.7636 26 1 -0.4849 0.8401 -0.0004 27 1 0.5617 -2.5208 -0.8436 28 1 0.6900 -2.5949 0.9302 29 1 2.1909 -4.2621 1.8834 30 1 3.2916 -2.9070 1.5363 31 1 2.9253 -6.4974 1.6917 32 1 4.7742 -8.0862 1.3461 33 1 6.9080 -7.3048 0.3971 34 1 7.1964 -4.9324 -0.1954 35 1 6.1645 -2.8396 -0.7186 36 1 4.4560 -2.5334 -0.3238 37 1 6.3051 -0.3787 1.9971 38 1 2.1966 -5.6857 -0.4600 39 1 0.6227 -4.9945 0.0021 40 1 1.8247 -4.0407 -2.6440 41 1 -1.0409 -4.7825 -1.6079 42 1 -0.6395 -4.0344 -3.2454 43 1 0.7996 -6.0458 -3.8115 44 1 0.3981 -6.7939 -2.1741 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:25 Heat of formation + Delta-G solvation = -41.913237 kcal Electronic energy + Delta-G solvation = -25618.259829 eV Core-core repulsion = 22115.060233 eV Total energy + Delta-G solvation = -3503.199595 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.25365 -39.03076 -37.55824 -35.75614 -35.44360 -32.79974 -32.57651 -31.02848 -28.03907 -27.59142 -26.32720 -23.90249 -22.50829 -22.02126 -21.66463 -20.85468 -20.05595 -19.42987 -17.78215 -16.60236 -16.39551 -15.91077 -15.80247 -15.30537 -14.90590 -14.80207 -14.58231 -14.22708 -13.80857 -13.40213 -13.07072 -12.82325 -12.79202 -12.23638 -12.01867 -11.97598 -11.92269 -11.58543 -11.25768 -11.16159 -11.13817 -10.89027 -10.85048 -10.63924 -10.59656 -10.41503 -10.25504 -9.94247 -9.82126 -9.35162 -9.21228 -8.56434 -8.43646 -8.34462 -7.32169 -6.02452 -4.04180 1.54815 1.64082 2.58257 3.32326 3.38518 3.42217 3.44047 4.07403 4.24757 4.43547 4.86262 4.89025 5.04938 5.16972 5.19945 5.31693 5.33590 5.36954 5.47501 5.60015 5.62976 5.70432 5.82244 5.92190 5.96031 5.98775 6.05121 6.10921 6.21750 6.26833 6.33239 6.38650 6.48327 6.50315 6.66119 6.69958 6.79550 6.83203 6.96819 7.22665 7.27015 7.35600 7.80169 8.09796 8.16882 8.24201 8.50733 9.02111 9.60261 11.07749 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009764 B = 0.007206 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.860781 B = 3884.959737 C = 6186.479585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.191 3.809 10 N -0.527 5.527 11 C 0.094 3.906 12 C -0.045 4.045 13 C -0.119 4.119 14 C -0.120 4.120 15 C -0.129 4.129 16 C -0.109 4.109 17 C -0.051 4.051 18 C -0.089 4.089 19 C 0.486 3.514 20 O -0.519 6.519 21 O -0.512 6.512 22 C 0.083 3.917 23 C -0.126 4.126 24 C -0.179 4.179 25 C -0.190 4.190 26 H 0.260 0.740 27 H 0.043 0.957 28 H -0.013 1.013 29 H 0.030 0.970 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.150 0.850 37 H 0.405 0.595 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.913 -10.656 -1.204 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.251 5.251 11 C -0.034 4.034 12 C -0.045 4.045 13 C -0.138 4.138 14 C -0.138 4.138 15 C -0.147 4.147 16 C -0.127 4.127 17 C -0.051 4.051 18 C -0.125 4.125 19 C 0.329 3.671 20 O -0.407 6.407 21 O -0.324 6.324 22 C -0.045 4.045 23 C -0.144 4.144 24 C -0.216 4.216 25 C -0.227 4.227 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.005 0.995 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.124 0.876 36 H 0.168 0.832 37 H 0.263 0.737 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.008 -10.739 -1.613 14.110 hybrid contribution -0.136 1.046 1.152 1.562 sum 8.872 -9.693 -0.461 13.148 Atomic orbital electron populations 1.69958 1.06031 1.26685 1.50935 1.24947 0.94796 0.99165 0.95450 0.86603 0.80011 0.83327 0.78233 1.20652 1.21550 1.19349 1.21138 0.93254 0.89914 1.50114 0.91973 1.19821 0.90267 0.87055 0.96264 1.62141 1.31553 1.05183 1.26226 1.21006 0.92873 0.97722 0.91768 1.19861 0.94742 0.94158 0.95754 1.21017 0.98870 0.92893 1.00980 1.21025 0.93644 0.99171 0.99946 1.20954 0.97537 0.95552 1.00681 1.20947 0.97869 0.93481 1.00442 1.19046 0.93639 0.93403 0.99048 1.20521 1.07112 0.91117 0.93795 1.23423 0.72552 0.80285 0.90808 1.90694 1.48323 1.70425 1.31268 1.84585 1.80767 1.23172 1.43826 1.21642 0.96505 0.93709 0.92686 1.22217 0.95612 0.99948 0.96643 1.22972 0.94494 1.00722 1.03372 1.22939 1.06192 0.92907 1.00686 0.92999 0.93881 0.99511 0.95148 0.89465 0.86491 0.86559 0.86540 0.86498 0.87631 0.83207 0.73712 0.91438 0.95829 0.87080 0.89304 0.89195 0.89401 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.51 -13.39 8.61 -34.44 -0.30 -13.69 16 8 H 0.06 1.60 5.94 -52.49 -0.31 1.29 16 9 C 0.19 4.70 4.59 -4.97 -0.02 4.68 16 10 N -0.53 -10.61 3.70 -237.51 -0.88 -11.49 16 11 C 0.09 1.80 4.07 -4.97 -0.02 1.78 16 12 C -0.04 -0.75 4.63 -104.62 -0.48 -1.23 16 13 C -0.12 -1.75 8.32 -39.59 -0.33 -2.08 16 14 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 15 C -0.13 -1.63 10.05 -39.59 -0.40 -2.02 16 16 C -0.11 -1.51 9.68 -39.59 -0.38 -1.89 16 17 C -0.05 -0.81 4.37 -104.63 -0.46 -1.27 16 18 C -0.09 -1.41 5.29 -29.04 -0.15 -1.56 16 19 C 0.49 8.20 7.53 36.01 0.27 8.47 16 20 O -0.52 -9.86 16.79 -18.75 -0.31 -10.18 16 21 O -0.51 -7.82 13.42 -39.26 -0.53 -8.34 16 22 C 0.08 1.47 5.10 -3.83 -0.02 1.45 16 23 C -0.13 -2.11 4.97 -90.62 -0.45 -2.56 16 24 C -0.18 -2.83 9.97 -26.69 -0.27 -3.10 16 25 C -0.19 -2.62 10.26 -26.69 -0.27 -2.89 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.04 1.14 6.94 -51.93 -0.36 0.78 16 28 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 29 H 0.03 0.58 7.98 -51.93 -0.41 0.17 16 30 H 0.09 1.86 5.88 -51.93 -0.31 1.56 16 31 H 0.12 1.57 8.04 -52.48 -0.42 1.15 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.11 1.36 8.05 -51.93 -0.42 0.94 16 36 H 0.15 2.76 4.88 -51.92 -0.25 2.51 16 37 H 0.40 4.41 9.10 45.56 0.41 4.83 16 38 H 0.07 1.11 5.87 -51.93 -0.30 0.80 16 39 H 0.02 0.43 7.79 -51.93 -0.40 0.03 16 40 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 41 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -31.03 362.58 -10.03 -41.06 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.71 Total: 9.00 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -3.78 Total: -16.36 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.14 Total: -36.72 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.84 Total: -18.52 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.03 -10.03 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.856 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds