Wall clock time and date at job start Tue Mar 31 2020 08:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99686 * 2 1 4 4 H 1.48501 * 109.47239 * 240.00011 * 3 2 1 5 5 H 1.48499 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46886 * 120.00480 * 3 2 1 7 7 C 1.37878 * 120.00590 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00485 * 174.01714 * 7 2 1 9 9 C 1.50708 * 119.99591 * 354.02092 * 7 2 1 10 10 C 1.52991 * 115.54957 * 85.83825 * 9 7 2 11 11 N 1.46505 * 109.47533 * 55.71504 * 10 9 7 12 12 C 1.39933 * 120.00355 * 182.21826 * 11 10 9 13 13 C 1.38858 * 120.01982 * 180.02562 * 12 11 10 14 14 C 1.38114 * 119.98161 * 179.97438 * 13 12 11 15 15 C 1.38702 * 120.01594 * 359.97438 * 14 13 12 16 16 O 1.36000 * 119.97806 * 180.02562 * 15 14 13 17 17 C 1.42897 * 117.00122 * 5.36219 * 16 15 14 18 18 H 1.08995 * 110.91315 * 38.05434 * 17 16 15 19 19 C 1.55303 * 110.84995 * 161.63842 * 17 16 15 20 20 C 1.54948 * 100.94252 * 152.32101 * 19 17 16 21 21 O 1.43640 * 105.13840 * 323.55636 * 20 19 17 22 22 C 1.43236 * 109.97205 * 24.42775 * 21 20 19 23 23 C 1.38698 * 120.03933 * 0.27440 * 15 14 13 24 24 C 1.38109 * 120.02271 * 359.49252 * 23 15 14 25 25 C 1.52995 * 117.49436 * 231.50919 * 9 7 2 26 26 C 1.52997 * 117.49689 * 300.16697 * 9 7 2 27 27 H 0.97002 * 120.00258 * 5.08257 * 1 2 3 28 28 H 1.09002 * 109.47395 * 295.71212 * 10 9 7 29 29 H 1.09001 * 109.47232 * 175.71813 * 10 9 7 30 30 H 0.96996 * 119.99501 * 2.22539 * 11 10 9 31 31 H 1.07993 * 120.00967 * 0.02562 * 13 12 11 32 32 H 1.07995 * 119.99014 * 180.02562 * 14 13 12 33 33 H 1.09008 * 111.12619 * 34.40833 * 19 17 16 34 34 H 1.09000 * 111.12895 * 270.24423 * 19 17 16 35 35 H 1.09005 * 110.31027 * 204.63689 * 20 19 17 36 36 H 1.09006 * 110.39265 * 82.51599 * 20 19 17 37 37 H 1.09001 * 109.83318 * 117.80120 * 22 21 20 38 38 H 1.09001 * 109.82984 * 238.77636 * 22 21 20 39 39 H 1.08003 * 119.98710 * 179.72102 * 23 15 14 40 40 H 1.07996 * 120.01223 * 180.25366 * 24 23 15 41 41 H 1.09005 * 117.49947 * 214.99741 * 25 9 7 42 42 H 1.08997 * 117.50384 * 0.02562 * 25 9 7 43 43 H 1.09004 * 117.49667 * 359.97438 * 26 9 7 44 44 H 1.08997 * 117.49843 * 144.99643 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0802 -1.1965 -0.0980 9 6 1.2572 -2.4957 0.1348 10 6 0.7193 -3.0865 -1.1699 11 7 1.8201 -3.2488 -2.1230 12 6 1.5647 -3.7316 -3.4113 13 6 2.6078 -3.8860 -4.3148 14 6 2.3549 -4.3631 -5.5860 15 6 1.0595 -4.6884 -5.9600 16 8 0.8115 -5.1586 -7.2118 17 6 1.9434 -5.4039 -8.0488 18 1 2.7706 -5.8184 -7.4729 19 6 1.5661 -6.3417 -9.2278 20 6 2.5923 -5.8945 -10.2993 21 8 2.7253 -4.4753 -10.1220 22 6 2.3750 -4.1149 -8.7808 23 6 0.0163 -4.5296 -5.0599 24 6 0.2680 -4.0572 -3.7868 25 6 1.7323 -3.4743 1.2106 26 6 0.4237 -2.7033 1.4009 27 1 -0.4850 0.8367 -0.0744 28 1 -0.0298 -2.4159 -1.5908 29 1 0.2661 -4.0574 -0.9695 30 1 2.7259 -3.0216 -1.8609 31 1 3.6166 -3.6339 -4.0232 32 1 3.1661 -4.4836 -6.2886 33 1 0.5446 -6.1607 -9.5626 34 1 1.7097 -7.3882 -8.9589 35 1 2.2176 -6.1176 -11.2983 36 1 3.5507 -6.3877 -10.1365 37 1 3.2371 -3.6756 -8.2788 38 1 1.5500 -3.4026 -8.7928 39 1 -0.9927 -4.7789 -5.3536 40 1 -0.5439 -3.9375 -3.0847 41 1 1.6616 -4.5392 0.9889 42 1 2.5851 -3.1766 1.8207 43 1 0.4163 -1.8986 2.1362 44 1 -0.5079 -3.2608 1.3044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849314320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:14 Heat of formation + Delta-G solvation = -29.048121 kcal Electronic energy + Delta-G solvation = -24067.205650 eV Core-core repulsion = 20564.563928 eV Total energy + Delta-G solvation = -3502.641722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42503 -39.04070 -37.62418 -36.57018 -33.68092 -32.01587 -31.76200 -30.74532 -29.13419 -28.22876 -25.71209 -24.94862 -22.97283 -22.83909 -21.83248 -21.17491 -20.53211 -19.24426 -18.28187 -16.95353 -16.67923 -16.50024 -15.99242 -15.39030 -15.01725 -14.74180 -14.44226 -14.22706 -14.00978 -13.67950 -13.51967 -13.18973 -13.06367 -12.89833 -12.53554 -12.49110 -12.12625 -11.84102 -11.77760 -11.51600 -11.18359 -11.02138 -10.99834 -10.78816 -10.56431 -10.44890 -10.28134 -9.85017 -9.59677 -9.17389 -8.84045 -8.68411 -8.51739 -8.21432 -6.53300 -6.11705 -4.19849 1.67712 2.01985 3.10912 3.25087 3.30774 3.32660 3.65797 4.05818 4.19323 4.24482 4.34196 4.53436 4.60784 4.77507 4.90217 5.11204 5.16674 5.17674 5.28392 5.32354 5.36834 5.38648 5.58177 5.62009 5.69639 5.79006 5.93853 6.05101 6.26246 6.29617 6.35998 6.40763 6.50965 6.61178 6.66267 6.67411 6.79118 6.79659 7.02393 7.04155 7.35156 7.41628 7.64170 7.77600 8.09160 8.31506 8.55320 8.80392 9.47145 10.96151 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021482 B = 0.002872 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.123582 B = 9748.588706 C =10451.442342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.058 0.942 9 C 0.030 3.970 10 C 0.166 3.834 11 N -0.718 5.718 12 C 0.210 3.790 13 C -0.174 4.174 14 C -0.152 4.152 15 C 0.037 3.963 16 O -0.306 6.306 17 C 0.057 3.943 18 H 0.087 0.913 19 C -0.151 4.151 20 C 0.052 3.948 21 O -0.380 6.380 22 C 0.027 3.973 23 C -0.092 4.092 24 C -0.169 4.169 25 C -0.211 4.211 26 C -0.149 4.149 27 H 0.262 0.738 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.401 0.599 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 -11.960 -14.421 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.030 3.970 10 C 0.042 3.958 11 N -0.343 5.343 12 C 0.102 3.898 13 C -0.198 4.198 14 C -0.171 4.171 15 C -0.008 4.008 16 O -0.220 6.220 17 C -0.001 4.001 18 H 0.105 0.895 19 C -0.188 4.188 20 C -0.025 4.025 21 O -0.299 6.299 22 C -0.050 4.050 23 C -0.112 4.112 24 C -0.192 4.192 25 C -0.248 4.248 26 C -0.187 4.187 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.236 0.764 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.424 -11.685 -14.422 18.720 hybrid contribution 0.898 1.008 0.378 1.402 sum 3.322 -10.677 -14.045 17.952 Atomic orbital electron populations 1.69945 1.05880 1.27045 1.48315 1.24954 0.94807 0.98896 0.94199 0.86701 0.79707 0.83184 0.78670 1.20204 1.21243 1.20222 1.20273 0.92691 0.88614 1.52102 0.92367 1.18970 0.98513 0.93888 0.85678 1.20928 0.88613 0.96449 0.89777 1.44867 1.11141 1.69095 1.09214 1.17949 0.93167 0.92575 0.86089 1.20334 0.98245 1.07683 0.93505 1.20853 0.95107 1.03877 0.97305 1.18569 0.93853 1.03631 0.84789 1.86075 1.31949 1.81327 1.22688 1.23782 0.89581 0.95114 0.91608 0.89521 1.23298 1.01565 0.99982 0.93968 1.23351 0.97948 0.81763 0.99422 1.88438 1.89578 1.22728 1.29161 1.23763 1.01132 0.97375 0.82698 1.20082 0.97541 1.01633 0.91903 1.20505 0.95737 1.06452 0.96507 1.23047 0.98762 0.95661 1.07376 1.22482 0.92068 1.01101 1.03061 0.92807 0.91767 0.95474 0.76384 0.86260 0.86429 0.88978 0.89021 0.89140 0.91788 0.90645 0.89848 0.85911 0.85419 0.91664 0.90457 0.89842 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.85 12.88 55.43 0.71 -23.14 16 2 C 0.08 1.98 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.50 -12.73 8.23 -34.44 -0.28 -13.01 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.03 0.69 1.51 -155.67 -0.23 0.46 16 10 C 0.17 3.50 4.81 -4.04 -0.02 3.48 16 11 N -0.72 -13.74 5.57 -58.59 -0.33 -14.07 16 12 C 0.21 3.68 6.66 -83.70 -0.56 3.13 16 13 C -0.17 -2.72 9.89 -39.40 -0.39 -3.11 16 14 C -0.15 -2.15 8.79 -39.46 -0.35 -2.49 16 15 C 0.04 0.54 6.63 -39.24 -0.26 0.28 16 16 O -0.31 -4.09 9.89 -19.74 -0.20 -4.29 16 17 C 0.06 0.59 2.79 -24.78 -0.07 0.52 16 18 H 0.09 0.83 6.59 -51.93 -0.34 0.49 16 19 C -0.15 -1.22 6.89 -24.48 -0.17 -1.39 16 20 C 0.05 0.40 7.78 38.19 0.30 0.70 16 21 O -0.38 -4.27 11.36 -35.23 -0.40 -4.67 16 22 C 0.03 0.30 7.10 37.89 0.27 0.57 16 23 C -0.09 -1.41 9.98 -39.46 -0.39 -1.81 16 24 C -0.17 -2.84 9.31 -39.40 -0.37 -3.20 16 25 C -0.21 -4.35 9.93 -26.70 -0.27 -4.61 16 26 C -0.15 -3.32 9.41 -26.70 -0.25 -3.57 16 27 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 28 H 0.06 1.51 7.84 -51.93 -0.41 1.10 16 29 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 30 H 0.40 7.64 8.12 -40.82 -0.33 7.30 16 31 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.12 1.38 5.35 -52.49 -0.28 1.09 16 33 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.78 7.48 -51.93 -0.39 0.39 16 38 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 39 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.13 2.14 6.73 -52.49 -0.35 1.78 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 43 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 44 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 361.19 15.07 5.44 5.44 Total: -1.00 -27.80 361.19 -9.63 -37.44 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.71 Total: 9.92 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -3.14 Total: -22.17 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.39 Total: -37.21 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.60 Total: -8.96 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.80 -9.63 -37.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849314320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.387 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds