Wall clock time and date at job start Tue Mar 31 2020 08:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99942 * 2 1 4 4 H 1.48499 * 109.47060 * 89.99770 * 3 2 1 5 5 H 1.48500 * 109.46848 * 209.99924 * 3 2 1 6 6 H 1.48492 * 109.46863 * 329.99766 * 3 2 1 7 7 C 1.37882 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99993 * 186.28843 * 7 2 1 9 9 C 1.50704 * 119.99927 * 6.29432 * 7 2 1 10 10 C 1.53001 * 115.54896 * 274.20541 * 9 7 2 11 11 N 1.46493 * 109.47014 * 294.60342 * 10 9 7 12 12 C 1.39943 * 120.00130 * 182.14543 * 11 10 9 13 13 C 1.38864 * 120.01372 * 359.72693 * 12 11 10 14 14 C 1.38113 * 119.97471 * 179.73806 * 13 12 11 15 15 C 1.38697 * 120.02315 * 0.51438 * 14 13 12 16 16 O 1.35999 * 119.98487 * 179.74207 * 15 14 13 17 17 C 1.42899 * 117.00318 * 174.35381 * 16 15 14 18 18 H 1.09008 * 110.45159 * 326.49888 * 17 16 15 19 19 C 1.54504 * 110.51006 * 203.90006 * 17 16 15 20 20 C 1.54480 * 104.05957 * 241.35088 * 19 17 16 21 21 O 1.44425 * 104.80403 * 23.98103 * 20 19 17 22 22 C 1.44430 * 105.27280 * 319.48568 * 21 20 19 23 23 C 1.38707 * 120.03676 * 359.76037 * 15 14 13 24 24 C 1.38112 * 120.01816 * 359.97438 * 23 15 14 25 25 C 1.52998 * 117.49767 * 128.53578 * 9 7 2 26 26 C 1.53002 * 117.49698 * 59.87535 * 9 7 2 27 27 H 0.97008 * 119.99856 * 177.75712 * 1 2 3 28 28 H 1.09005 * 109.46778 * 54.60054 * 10 9 7 29 29 H 1.08998 * 109.46750 * 174.59999 * 10 9 7 30 30 H 0.97001 * 120.00619 * 2.15109 * 11 10 9 31 31 H 1.07997 * 120.01170 * 359.97438 * 13 12 11 32 32 H 1.07997 * 119.98916 * 180.27334 * 14 13 12 33 33 H 1.09001 * 110.51703 * 359.97438 * 19 17 16 34 34 H 1.08999 * 110.51361 * 122.71059 * 19 17 16 35 35 H 1.09000 * 110.37545 * 142.81104 * 20 19 17 36 36 H 1.09003 * 110.37811 * 265.03454 * 20 19 17 37 37 H 1.09001 * 110.37065 * 281.68109 * 22 21 20 38 38 H 1.08995 * 110.37061 * 159.34608 * 22 21 20 39 39 H 1.07999 * 119.99026 * 179.97438 * 23 15 14 40 40 H 1.07993 * 120.00912 * 179.97438 * 24 23 15 41 41 H 1.08994 * 117.50084 * 359.97438 * 25 9 7 42 42 H 1.09000 * 117.49492 * 145.02513 * 25 9 7 43 43 H 1.09001 * 117.49470 * 214.97781 * 26 9 7 44 44 H 1.08995 * 117.50347 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0796 -1.1968 0.1030 9 6 1.2579 -2.4953 -0.1420 10 6 0.7128 -3.0892 1.1585 11 7 1.8293 -3.4681 2.0279 12 6 1.5792 -4.0783 3.2622 13 6 0.2726 -4.3196 3.6657 14 6 0.0268 -4.9268 4.8816 15 6 1.0842 -5.2858 5.7043 16 8 0.8411 -5.8789 6.9038 17 6 1.9754 -6.3342 7.6441 18 1 2.7582 -6.6786 6.9682 19 6 1.5683 -7.4610 8.6197 20 6 1.9010 -6.8877 10.0151 21 8 1.8735 -5.4543 9.8412 22 6 2.5060 -5.2135 8.5653 23 6 2.3895 -5.0400 5.3045 24 6 2.6372 -4.4379 4.0865 25 6 1.7387 -3.4716 -1.2174 26 6 0.4312 -2.6999 -1.4131 27 1 -0.4850 -0.8395 -0.0329 28 1 0.0934 -2.3486 1.6645 29 1 0.1132 -3.9708 0.9320 30 1 2.7420 -3.2961 1.7481 31 1 -0.5510 -4.0361 3.0272 32 1 -0.9891 -5.1185 5.1937 33 1 0.5017 -7.6705 8.5377 34 1 2.1515 -8.3616 8.4278 35 1 1.1492 -7.1964 10.7413 36 1 2.8912 -7.2141 10.3332 37 1 3.5897 -5.2815 8.6602 38 1 2.2188 -4.2360 8.1779 39 1 3.2122 -5.3194 5.9459 40 1 3.6535 -4.2462 3.7756 41 1 2.5947 -3.1725 -1.8222 42 1 1.6662 -4.5369 -0.9987 43 1 -0.5008 -3.2580 -1.3229 44 1 0.4270 -1.8932 -2.1461 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849314321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:18 Heat of formation + Delta-G solvation = -33.247451 kcal Electronic energy + Delta-G solvation = -24092.692162 eV Core-core repulsion = 20589.868343 eV Total energy + Delta-G solvation = -3502.823819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46211 -39.06010 -37.70652 -36.73686 -33.77274 -31.95441 -31.77700 -30.78618 -29.06227 -28.31267 -25.48162 -24.82715 -23.31952 -22.84174 -21.78636 -21.34210 -20.49805 -19.47749 -18.26849 -16.98535 -16.79046 -16.57659 -16.25867 -15.72387 -15.09764 -14.60259 -14.53079 -14.11223 -13.83408 -13.76959 -13.43658 -13.14225 -12.96911 -12.93316 -12.66725 -12.42231 -12.24308 -11.94270 -11.80164 -11.76413 -11.28466 -11.02442 -10.93507 -10.81842 -10.53649 -10.45248 -10.17856 -10.05417 -9.67463 -9.12605 -8.74742 -8.59817 -8.52627 -8.41279 -6.62628 -6.43128 -4.18373 1.61107 1.96032 3.22612 3.38873 3.41245 3.56590 3.63104 4.05049 4.13241 4.22191 4.44891 4.49740 4.63707 4.73290 5.00477 5.05391 5.07276 5.08288 5.18420 5.25736 5.30776 5.39754 5.50118 5.59777 5.62704 5.71103 5.75897 5.96479 6.09361 6.14581 6.22313 6.26206 6.34170 6.45126 6.49196 6.57762 6.61353 6.71112 6.79352 6.96075 7.15114 7.17948 7.62391 7.97626 8.14774 8.30744 8.43246 8.78420 9.56934 10.96328 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.002787 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.790850 B =10043.316652 C =10646.156587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.029 3.971 3 Si 1.068 2.932 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.574 4.574 8 H 0.052 0.948 9 C 0.008 3.992 10 C 0.163 3.837 11 N -0.721 5.721 12 C 0.205 3.795 13 C -0.167 4.167 14 C -0.094 4.094 15 C 0.043 3.957 16 O -0.307 6.307 17 C 0.054 3.946 18 H 0.087 0.913 19 C -0.152 4.152 20 C 0.044 3.956 21 O -0.368 6.368 22 C 0.023 3.977 23 C -0.155 4.155 24 C -0.171 4.171 25 C -0.193 4.193 26 C -0.172 4.172 27 H 0.275 0.725 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.401 0.599 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -14.273 13.865 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.896 3.104 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.612 4.612 8 H 0.070 0.930 9 C 0.007 3.993 10 C 0.038 3.962 11 N -0.347 5.347 12 C 0.098 3.902 13 C -0.191 4.191 14 C -0.113 4.113 15 C -0.002 4.002 16 O -0.221 6.221 17 C -0.003 4.003 18 H 0.105 0.895 19 C -0.190 4.190 20 C -0.033 4.033 21 O -0.287 6.287 22 C -0.054 4.054 23 C -0.174 4.174 24 C -0.195 4.195 25 C -0.231 4.231 26 C -0.211 4.211 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.236 0.764 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.700 -12.424 13.986 19.070 hybrid contribution 0.872 -1.739 -0.412 1.989 sum 4.572 -14.163 13.574 20.143 Atomic orbital electron populations 1.70725 1.06823 1.31373 1.44648 1.25761 0.96519 1.02310 0.93115 0.83552 0.74742 0.75226 0.76839 1.21436 1.21505 1.20945 1.21198 0.93986 0.89650 1.56344 0.92981 1.19277 0.99015 0.95473 0.85546 1.21018 0.87892 0.95896 0.91376 1.44771 1.09615 1.64183 1.16095 1.17938 0.93235 0.92283 0.86701 1.20499 0.95497 1.05548 0.97518 1.20100 0.97546 1.00559 0.93131 1.18605 0.93511 1.01441 0.86657 1.86130 1.32568 1.73835 1.29609 1.23683 0.89081 0.94165 0.93366 0.89519 1.23066 1.04435 0.97519 0.93978 1.23436 1.01469 0.81581 0.96783 1.89182 1.80433 1.21949 1.37109 1.24033 0.97043 1.00483 0.83851 1.20833 0.95014 1.03664 0.97901 1.20328 0.97894 1.06050 0.95202 1.22883 0.98113 0.95583 1.06503 1.22749 0.92965 1.02159 1.03188 0.91376 0.92540 0.95116 0.76400 0.85563 0.85841 0.88940 0.89308 0.88715 0.92058 0.91200 0.87963 0.86314 0.86245 0.90138 0.91423 0.91374 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 13.54 55.43 0.75 -24.94 16 2 C 0.03 0.79 5.39 -17.82 -0.10 0.70 16 3 Si 1.07 24.38 29.91 -169.99 -5.08 19.29 16 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.57 -14.97 8.64 -34.44 -0.30 -15.27 16 8 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 9 C 0.01 0.18 0.95 -155.66 -0.15 0.03 16 10 C 0.16 3.42 4.66 -4.04 -0.02 3.40 16 11 N -0.72 -13.73 5.66 -58.59 -0.33 -14.06 16 12 C 0.21 3.58 6.66 -83.69 -0.56 3.02 16 13 C -0.17 -2.82 9.31 -39.40 -0.37 -3.18 16 14 C -0.09 -1.45 9.98 -39.46 -0.39 -1.84 16 15 C 0.04 0.64 6.66 -39.24 -0.26 0.38 16 16 O -0.31 -4.19 9.78 -19.74 -0.19 -4.39 16 17 C 0.05 0.56 2.94 -25.17 -0.07 0.48 16 18 H 0.09 0.78 6.28 -51.92 -0.33 0.45 16 19 C -0.15 -1.21 6.90 -25.16 -0.17 -1.39 16 20 C 0.04 0.35 7.63 37.93 0.29 0.64 16 21 O -0.37 -4.29 11.65 -35.23 -0.41 -4.71 16 22 C 0.02 0.24 6.96 37.93 0.26 0.50 16 23 C -0.15 -2.13 8.86 -39.45 -0.35 -2.48 16 24 C -0.17 -2.62 9.89 -39.40 -0.39 -3.01 16 25 C -0.19 -3.98 9.96 -26.69 -0.27 -4.24 16 26 C -0.17 -3.78 8.64 -26.69 -0.23 -4.01 16 27 H 0.27 7.71 6.28 -40.82 -0.26 7.46 16 28 H 0.06 1.32 7.85 -51.93 -0.41 0.92 16 29 H 0.03 0.61 7.80 -51.93 -0.41 0.20 16 30 H 0.40 7.61 8.38 -40.82 -0.34 7.26 16 31 H 0.13 2.12 6.73 -52.49 -0.35 1.76 16 32 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.09 0.80 8.00 -51.93 -0.42 0.38 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 39 H 0.12 1.31 5.84 -52.49 -0.31 1.00 16 40 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -29.47 360.20 -9.58 -39.05 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.67 Total: 10.62 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -3.07 Total: -26.29 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.42 Total: -39.01 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.60 Total: -9.09 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.29 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.47 -9.58 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849314321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.801 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds