Wall clock time and date at job start Tue Mar 31 2020 08:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99942 * 2 1 4 4 H 1.48499 * 109.47060 * 89.99770 * 3 2 1 5 5 H 1.48500 * 109.46848 * 209.99924 * 3 2 1 6 6 H 1.48492 * 109.46863 * 329.99766 * 3 2 1 7 7 C 1.37882 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99993 * 186.28843 * 7 2 1 9 9 C 1.50704 * 119.99927 * 6.29432 * 7 2 1 10 10 C 1.53001 * 115.54896 * 274.20541 * 9 7 2 11 11 N 1.46493 * 109.47014 * 294.60342 * 10 9 7 12 12 C 1.39943 * 120.00130 * 182.14543 * 11 10 9 13 13 C 1.38864 * 120.01372 * 359.72693 * 12 11 10 14 14 C 1.38113 * 119.97471 * 179.73806 * 13 12 11 15 15 C 1.38697 * 120.02315 * 0.51438 * 14 13 12 16 16 O 1.35999 * 119.98487 * 179.74207 * 15 14 13 17 17 C 1.42899 * 117.00318 * 174.35381 * 16 15 14 18 18 H 1.09008 * 110.45159 * 326.49888 * 17 16 15 19 19 C 1.54504 * 110.51006 * 203.90006 * 17 16 15 20 20 C 1.54480 * 104.05957 * 241.35088 * 19 17 16 21 21 O 1.44425 * 104.80403 * 23.98103 * 20 19 17 22 22 C 1.44430 * 105.27280 * 319.48568 * 21 20 19 23 23 C 1.38707 * 120.03676 * 359.76037 * 15 14 13 24 24 C 1.38112 * 120.01816 * 359.97438 * 23 15 14 25 25 C 1.52998 * 117.49767 * 128.53578 * 9 7 2 26 26 C 1.53002 * 117.49698 * 59.87535 * 9 7 2 27 27 H 0.97008 * 119.99856 * 177.75712 * 1 2 3 28 28 H 1.09005 * 109.46778 * 54.60054 * 10 9 7 29 29 H 1.08998 * 109.46750 * 174.59999 * 10 9 7 30 30 H 0.97001 * 120.00619 * 2.15109 * 11 10 9 31 31 H 1.07997 * 120.01170 * 359.97438 * 13 12 11 32 32 H 1.07997 * 119.98916 * 180.27334 * 14 13 12 33 33 H 1.09001 * 110.51703 * 359.97438 * 19 17 16 34 34 H 1.08999 * 110.51361 * 122.71059 * 19 17 16 35 35 H 1.09000 * 110.37545 * 142.81104 * 20 19 17 36 36 H 1.09003 * 110.37811 * 265.03454 * 20 19 17 37 37 H 1.09001 * 110.37065 * 281.68109 * 22 21 20 38 38 H 1.08995 * 110.37061 * 159.34608 * 22 21 20 39 39 H 1.07999 * 119.99026 * 179.97438 * 23 15 14 40 40 H 1.07993 * 120.00912 * 179.97438 * 24 23 15 41 41 H 1.08994 * 117.50084 * 359.97438 * 25 9 7 42 42 H 1.09000 * 117.49492 * 145.02513 * 25 9 7 43 43 H 1.09001 * 117.49470 * 214.97781 * 26 9 7 44 44 H 1.08995 * 117.50347 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0796 -1.1968 0.1030 9 6 1.2579 -2.4953 -0.1420 10 6 0.7128 -3.0892 1.1585 11 7 1.8293 -3.4681 2.0279 12 6 1.5792 -4.0783 3.2622 13 6 0.2726 -4.3196 3.6657 14 6 0.0268 -4.9268 4.8816 15 6 1.0842 -5.2858 5.7043 16 8 0.8411 -5.8789 6.9038 17 6 1.9754 -6.3342 7.6441 18 1 2.7582 -6.6786 6.9682 19 6 1.5683 -7.4610 8.6197 20 6 1.9010 -6.8877 10.0151 21 8 1.8735 -5.4543 9.8412 22 6 2.5060 -5.2135 8.5653 23 6 2.3895 -5.0400 5.3045 24 6 2.6372 -4.4379 4.0865 25 6 1.7387 -3.4716 -1.2174 26 6 0.4312 -2.6999 -1.4131 27 1 -0.4850 -0.8395 -0.0329 28 1 0.0934 -2.3486 1.6645 29 1 0.1132 -3.9708 0.9320 30 1 2.7420 -3.2961 1.7481 31 1 -0.5510 -4.0361 3.0272 32 1 -0.9891 -5.1185 5.1937 33 1 0.5017 -7.6705 8.5377 34 1 2.1515 -8.3616 8.4278 35 1 1.1492 -7.1964 10.7413 36 1 2.8912 -7.2141 10.3332 37 1 3.5897 -5.2815 8.6602 38 1 2.2188 -4.2360 8.1779 39 1 3.2122 -5.3194 5.9459 40 1 3.6535 -4.2462 3.7756 41 1 2.5947 -3.1725 -1.8222 42 1 1.6662 -4.5369 -0.9987 43 1 -0.5008 -3.2580 -1.3229 44 1 0.4270 -1.8932 -2.1461 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849314321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:17 Heat of formation + Delta-G solvation = -50.014849 kcal Electronic energy + Delta-G solvation = -24093.419251 eV Core-core repulsion = 20589.868343 eV Total energy + Delta-G solvation = -3503.550908 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42532 -40.13078 -39.12644 -38.05769 -35.15090 -33.94216 -32.61529 -31.90226 -29.86950 -29.59359 -27.19834 -26.56944 -24.12848 -23.95944 -23.14322 -22.68548 -21.69105 -21.15358 -19.30135 -18.68053 -17.87581 -17.60028 -17.32579 -16.71610 -16.25887 -15.86450 -15.64932 -15.61128 -15.37341 -15.15728 -14.78833 -14.53481 -14.31525 -14.11619 -14.04333 -13.67660 -13.38695 -13.08645 -12.88728 -12.78687 -12.66875 -12.50357 -12.24581 -12.08996 -11.96794 -11.95155 -11.46942 -11.43721 -10.84744 -10.56031 -10.46912 -10.34769 -10.20967 -9.94454 -8.54345 -7.95338 -6.28312 0.40978 0.73105 1.53352 1.60205 1.76877 2.28210 2.55092 2.62524 2.90150 2.97924 3.22947 3.34810 3.48116 3.77347 3.88264 3.95019 4.06917 4.07744 4.16661 4.31069 4.33385 4.37195 4.42454 4.44464 4.53635 4.59931 4.67579 4.69822 4.78908 4.81818 4.83410 4.88402 5.02249 5.05099 5.07919 5.18565 5.39488 5.42454 5.44281 5.46417 5.72479 5.79734 6.12309 6.25958 6.46645 6.64459 6.70979 7.01096 7.52922 8.86625 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.002787 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.790850 B =10043.316652 C =10646.156587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.019 4.019 3 Si 1.108 2.892 4 H -0.281 1.281 5 H -0.272 1.272 6 H -0.287 1.287 7 C -0.577 4.577 8 H 0.045 0.955 9 C -0.017 4.017 10 C 0.182 3.818 11 N -0.727 5.727 12 C 0.179 3.821 13 C -0.180 4.180 14 C -0.107 4.107 15 C 0.050 3.950 16 O -0.321 6.321 17 C 0.043 3.957 18 H 0.106 0.894 19 C -0.148 4.148 20 C 0.040 3.960 21 O -0.400 6.400 22 C 0.021 3.979 23 C -0.149 4.149 24 C -0.168 4.168 25 C -0.167 4.167 26 C -0.176 4.176 27 H 0.267 0.733 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.400 0.600 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.136 0.864 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.263 -16.102 15.241 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.219 4.219 3 Si 0.932 3.068 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.213 1.213 7 C -0.614 4.614 8 H 0.063 0.937 9 C -0.018 4.018 10 C 0.057 3.943 11 N -0.356 5.356 12 C 0.074 3.926 13 C -0.203 4.203 14 C -0.126 4.126 15 C 0.004 3.996 16 O -0.236 6.236 17 C -0.013 4.013 18 H 0.124 0.876 19 C -0.185 4.185 20 C -0.036 4.036 21 O -0.320 6.320 22 C -0.055 4.055 23 C -0.168 4.168 24 C -0.191 4.191 25 C -0.204 4.204 26 C -0.215 4.215 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.235 0.765 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.169 0.831 40 H 0.154 0.846 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.614 -14.292 15.394 21.743 hybrid contribution 0.300 -1.289 -0.686 1.491 sum 5.914 -15.581 14.708 22.228 Atomic orbital electron populations 1.70816 1.07702 1.30967 1.47235 1.26924 0.96642 1.05542 0.92802 0.83020 0.74369 0.72170 0.77214 1.20738 1.19744 1.21265 1.21473 0.93854 0.91135 1.54965 0.93682 1.19323 1.00134 0.95495 0.86807 1.20595 0.88149 0.95147 0.90382 1.44579 1.08714 1.65467 1.16790 1.18162 0.94121 0.93579 0.86705 1.20524 0.95299 1.06285 0.98181 1.20242 0.98613 1.00752 0.92969 1.18731 0.93662 1.00370 0.86827 1.86135 1.34727 1.73591 1.29137 1.24054 0.88685 0.94875 0.93703 0.87621 1.23121 1.04342 0.97773 0.93291 1.23674 1.03205 0.79733 0.97020 1.89147 1.80932 1.24293 1.37604 1.24089 0.98452 0.99490 0.83508 1.21135 0.95650 1.02441 0.97540 1.20581 0.98121 1.05187 0.95179 1.22866 0.97011 0.96357 1.04214 1.22689 0.94512 1.02149 1.02105 0.92284 0.96075 0.94007 0.76540 0.86560 0.84898 0.89950 0.86436 0.87836 0.89726 0.88532 0.89958 0.83052 0.84577 0.90196 0.88975 0.89747 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.48 13.54 21.45 0.29 -54.18 16 2 C -0.02 -1.02 5.39 84.66 0.46 -0.56 16 3 Si 1.11 49.46 29.91 68.60 2.05 51.52 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.58 -30.37 8.64 25.60 0.22 -30.14 16 8 H 0.04 2.38 7.82 -2.91 -0.02 2.35 16 9 C -0.02 -0.78 0.95 -52.93 -0.05 -0.83 16 10 C 0.18 7.81 4.66 86.38 0.40 8.21 16 11 N -0.73 -27.78 5.66 -339.27 -1.92 -29.71 16 12 C 0.18 6.18 6.66 38.14 0.25 6.43 16 13 C -0.18 -6.13 9.31 22.39 0.21 -5.92 16 14 C -0.11 -3.25 9.98 22.35 0.22 -3.03 16 15 C 0.05 1.39 6.66 22.49 0.15 1.54 16 16 O -0.32 -8.22 9.78 -93.54 -0.91 -9.13 16 17 C 0.04 0.76 2.94 31.61 0.09 0.86 16 18 H 0.11 1.46 6.28 -2.38 -0.01 1.44 16 19 C -0.15 -1.91 6.90 31.61 0.22 -1.70 16 20 C 0.04 0.52 7.63 72.49 0.55 1.07 16 21 O -0.40 -8.64 11.65 -148.98 -1.74 -10.37 16 22 C 0.02 0.39 6.96 72.48 0.50 0.90 16 23 C -0.15 -3.73 8.86 22.35 0.20 -3.53 16 24 C -0.17 -4.84 9.89 22.39 0.22 -4.62 16 25 C -0.17 -6.68 9.96 30.62 0.30 -6.38 16 26 C -0.18 -7.75 8.64 30.62 0.26 -7.49 16 27 H 0.27 15.51 6.28 -92.70 -0.58 14.93 16 28 H 0.02 1.04 7.85 -2.38 -0.02 1.02 16 29 H 0.04 1.66 7.80 -2.39 -0.02 1.64 16 30 H 0.40 15.08 8.38 -92.71 -0.78 14.30 16 31 H 0.12 4.08 6.73 -2.91 -0.02 4.06 16 32 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.08 1.25 8.00 -2.39 -0.02 1.23 16 34 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 39 H 0.15 2.74 5.84 -2.91 -0.02 2.72 16 40 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 41 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.06 3.05 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -64.49 360.20 2.40 -62.09 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.41 Total: 34.98 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 4.22 Total: -45.19 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.63 Total: -83.89 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -2.65 Total: -19.50 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.52 kcal Total: -64.49 2.40 -62.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849314321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.075 kcal (2) G-P(sol) polarization free energy of solvation -64.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds