Wall clock time and date at job start Tue Mar 31 2020 08:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35903 * 116.99959 * 180.02562 * 11 10 9 13 13 C 1.38854 * 119.98424 * 359.72081 * 12 11 10 14 14 C 1.38245 * 120.24820 * 179.72952 * 13 12 11 15 15 C 1.38006 * 120.20529 * 0.54605 * 14 13 12 16 16 C 1.39599 * 119.96235 * 359.72934 * 15 14 13 17 17 C 1.47663 * 120.12244 * 180.02562 * 16 15 14 18 18 N 1.29323 * 119.99835 * 359.97438 * 17 16 15 19 19 O 1.41595 * 120.00101 * 179.97438 * 18 17 16 20 20 C 1.42896 * 114.00584 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47477 * 179.97438 * 20 19 18 22 22 C 1.53781 * 113.61541 * 274.13525 * 21 20 19 23 23 C 1.53949 * 87.02089 * 220.05185 * 22 21 20 24 24 C 1.53774 * 87.11331 * 25.36469 * 23 22 21 25 25 C 1.38445 * 119.97972 * 180.02562 * 12 11 10 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.07999 * 119.87793 * 0.02562 * 13 12 11 32 32 H 1.08001 * 119.89734 * 180.25874 * 14 13 12 33 33 H 1.08001 * 120.01640 * 179.75358 * 15 14 13 34 34 H 1.08000 * 119.99842 * 179.97438 * 17 16 15 35 35 H 1.09005 * 109.47517 * 300.00507 * 20 19 18 36 36 H 1.09007 * 109.47097 * 59.99458 * 20 19 18 37 37 H 1.08991 * 112.84852 * 45.33753 * 21 20 19 38 38 H 1.09008 * 113.61227 * 334.56959 * 22 21 20 39 39 H 1.09001 * 113.61400 * 105.46633 * 22 21 20 40 40 H 1.09003 * 113.53429 * 270.80772 * 23 22 21 41 41 H 1.09001 * 113.66638 * 139.93891 * 23 22 21 42 42 H 1.09001 * 113.61469 * 220.09117 * 24 23 22 43 43 H 1.08995 * 113.69106 * 89.20252 * 24 23 22 44 44 H 1.07998 * 120.10639 * 359.97178 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2708 -6.0394 0.0004 13 6 3.6574 -5.9664 -0.0045 14 6 4.4156 -7.1224 0.0016 15 6 3.7992 -8.3571 0.0012 16 6 2.4057 -8.4407 0.0003 17 6 1.7425 -9.7600 0.0004 18 7 2.4527 -10.8407 0.0008 19 8 1.8168 -12.1058 0.0015 20 6 2.7220 -13.2115 0.0013 21 6 1.9290 -14.5199 0.0027 22 6 1.5240 -14.9933 1.4086 23 6 1.8587 -16.4201 0.9371 24 6 2.8125 -15.7758 -0.0826 25 6 1.6418 -7.2728 -0.0007 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 4.1454 -5.0030 -0.0082 32 1 5.4938 -7.0589 0.0020 33 1 4.3946 -9.2582 0.0019 34 1 0.6643 -9.8223 0.0001 35 1 3.3494 -13.1674 -0.8890 36 1 3.3503 -13.1668 0.8909 37 1 1.1052 -14.5163 -0.7110 38 1 2.1813 -14.6290 2.1982 39 1 0.4679 -14.8429 1.6327 40 1 1.0148 -16.9367 0.4799 41 1 2.3669 -17.0220 1.6906 42 1 2.7951 -16.2562 -1.0609 43 1 3.8230 -15.6254 0.2971 44 1 0.5634 -7.3309 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853439723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:15 Heat of formation + Delta-G solvation = 4.285062 kcal Electronic energy + Delta-G solvation = -22362.887829 eV Core-core repulsion = 18861.691542 eV Total energy + Delta-G solvation = -3501.196287 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.84821 -39.42129 -37.75458 -36.96585 -34.10819 -33.37358 -31.11715 -30.37289 -29.20280 -28.27596 -26.04875 -25.24683 -23.75830 -22.91987 -22.42435 -21.23717 -20.08570 -19.72559 -17.73758 -17.48658 -16.42038 -16.27094 -15.75564 -15.67737 -15.38758 -15.26669 -15.20052 -14.56586 -14.34928 -14.25207 -13.40251 -13.26343 -12.92179 -12.89908 -12.74124 -12.33904 -12.30504 -11.98426 -11.64771 -11.43457 -11.40921 -11.06379 -10.91564 -10.83999 -10.80566 -10.70825 -10.55050 -10.09543 -10.03399 -9.86063 -9.69181 -9.33924 -8.62298 -8.46252 -7.93845 -6.12099 -4.17082 0.73247 1.56734 2.36176 2.38330 3.27574 3.32210 3.33665 3.75495 3.92453 4.13072 4.18627 4.31289 4.39206 4.42051 4.56512 4.89824 4.94795 5.04460 5.13654 5.21091 5.24342 5.24807 5.27720 5.29285 5.37338 5.46006 5.48490 5.50916 5.54236 5.60709 5.78466 5.97556 5.99060 5.99243 6.00556 6.12602 6.43334 6.47193 6.49773 6.65517 6.81924 7.33098 7.46659 7.61205 7.76948 7.99971 8.21104 8.88228 9.47408 10.99310 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.052558 B = 0.001690 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.619077 B =16565.966073 C =16961.795686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.064 3.936 11 O -0.314 6.314 12 C 0.141 3.859 13 C -0.191 4.191 14 C -0.087 4.087 15 C -0.129 4.129 16 C -0.030 4.030 17 C 0.159 3.841 18 N -0.340 5.340 19 O -0.242 6.242 20 C 0.086 3.914 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.130 4.130 25 C -0.128 4.128 26 H 0.264 0.736 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.197 -28.561 0.570 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.010 4.010 11 O -0.227 6.227 12 C 0.094 3.906 13 C -0.211 4.211 14 C -0.105 4.105 15 C -0.149 4.149 16 C -0.032 4.032 17 C -0.051 4.051 18 N -0.084 5.084 19 O -0.257 6.257 20 C 0.010 3.990 21 C -0.130 4.130 22 C -0.173 4.173 23 C -0.180 4.180 24 C -0.168 4.168 25 C -0.149 4.149 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.475 -28.901 0.570 29.623 hybrid contribution -0.024 1.129 -0.027 1.130 sum 6.451 -27.772 0.543 28.516 Atomic orbital electron populations 1.69966 1.06101 1.27110 1.49504 1.24984 0.94903 0.99370 0.94853 0.86543 0.79501 0.82588 0.78718 1.20095 1.21108 1.20090 1.20930 0.93022 0.90220 1.52518 0.92396 1.19123 0.94172 0.88953 0.98935 1.23368 0.97157 0.80694 0.99748 1.86188 1.36406 1.13102 1.86988 1.18970 0.90047 0.87504 0.94067 1.21581 0.93194 1.00119 1.06216 1.20885 0.99779 0.91628 0.98174 1.21137 0.93378 0.97954 1.02437 1.17989 0.93023 0.89060 1.03092 1.24262 0.98532 0.90106 0.92183 1.76587 1.26447 0.91139 1.14270 1.89829 1.31666 1.10506 1.93694 1.22447 0.92260 0.83229 1.01100 1.22622 0.99490 0.91886 0.99008 1.23016 1.02031 0.95929 0.96344 1.22838 0.99611 0.96577 0.98975 1.22890 0.98439 0.95339 1.00089 1.20413 1.00372 0.88811 1.05274 0.92633 0.95353 0.95340 0.92996 0.93005 0.84821 0.85633 0.85406 0.85795 0.92538 0.92497 0.88361 0.89953 0.91217 0.90056 0.91218 0.91030 0.89778 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.65 5.34 -27.89 -0.15 0.50 16 10 C 0.06 1.32 4.68 37.16 0.17 1.50 16 11 O -0.31 -6.14 10.13 -19.44 -0.20 -6.33 16 12 C 0.14 2.31 6.68 -39.28 -0.26 2.04 16 13 C -0.19 -2.79 9.03 -39.35 -0.36 -3.15 16 14 C -0.09 -1.07 10.03 -39.66 -0.40 -1.47 16 15 C -0.13 -1.60 9.57 -39.16 -0.37 -1.98 16 16 C -0.03 -0.39 5.87 -105.05 -0.62 -1.01 16 17 C 0.16 1.89 10.90 -14.76 -0.16 1.73 16 18 N -0.34 -4.34 10.46 32.14 0.34 -4.01 16 19 O -0.24 -2.98 11.36 -11.47 -0.13 -3.11 16 20 C 0.09 0.80 6.22 37.16 0.23 1.03 16 21 C -0.11 -0.80 4.00 -89.81 -0.36 -1.16 16 22 C -0.14 -0.92 7.65 -25.83 -0.20 -1.11 16 23 C -0.14 -0.77 8.09 -25.83 -0.21 -0.98 16 24 C -0.13 -0.72 7.65 -25.92 -0.20 -0.92 16 25 C -0.13 -1.80 9.73 -39.01 -0.38 -2.18 16 26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 30 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 31 H 0.13 1.89 6.28 -52.49 -0.33 1.56 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.46 7.55 -52.49 -0.40 1.06 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 7.87 -51.92 -0.41 0.10 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.56 7.92 -51.92 -0.41 0.15 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 44 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -30.23 374.49 -9.25 -39.48 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.95 Total: -1.93 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.67 Total: -20.33 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 1.07 Total: -29.39 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.33 Total: -9.44 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.23 -9.25 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853439723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.763 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds