Wall clock time and date at job start Tue Mar 31 2020 07:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00161 * 2 1 4 4 H 1.48507 * 109.46947 * 269.99940 * 3 2 1 5 5 H 1.48491 * 109.47063 * 30.00007 * 3 2 1 6 6 H 1.48494 * 109.47104 * 150.00383 * 3 2 1 7 7 C 1.37878 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00199 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00072 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.52378 * 60.07242 * 9 7 2 11 11 C 1.53038 * 109.49775 * 180.15659 * 9 7 2 12 12 C 1.53037 * 109.53813 * 181.31484 * 11 9 7 13 13 C 1.53632 * 109.24362 * 298.51199 * 12 11 9 14 14 N 1.46928 * 108.54100 * 54.85431 * 13 12 11 15 15 C 1.34770 * 120.63016 * 126.36902 * 14 13 12 16 16 O 1.21279 * 120.00126 * 179.71579 * 15 14 13 17 17 C 1.50697 * 120.00211 * 359.72408 * 15 14 13 18 18 C 1.50698 * 109.47327 * 179.97438 * 17 15 14 19 19 C 1.38260 * 119.99559 * 264.99239 * 18 17 15 20 20 C 1.38212 * 119.99650 * 179.71963 * 19 18 17 21 21 C 1.38255 * 120.00300 * 0.28729 * 20 19 18 22 22 C 1.38216 * 119.99744 * 359.97134 * 21 20 19 23 23 C 1.38208 * 120.00322 * 85.21005 * 18 17 15 24 24 C 1.50699 * 120.00214 * 0.06609 * 23 18 17 25 25 O 1.42895 * 109.47488 * 180.17008 * 24 23 18 26 26 C 1.46929 * 118.73769 * 306.09510 * 14 13 12 27 27 H 0.97006 * 119.99870 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.45616 * 301.33375 * 11 9 7 29 29 H 1.08994 * 109.46062 * 61.31105 * 11 9 7 30 30 H 1.09003 * 109.49898 * 58.58252 * 12 11 9 31 31 H 1.08991 * 109.50078 * 178.64888 * 12 11 9 32 32 H 1.08994 * 109.73304 * 295.12164 * 13 12 11 33 33 H 1.08997 * 109.66632 * 174.54736 * 13 12 11 34 34 H 1.09005 * 109.47523 * 59.99461 * 17 15 14 35 35 H 1.09000 * 109.46991 * 299.99501 * 17 15 14 36 36 H 1.08002 * 120.00476 * 0.02562 * 19 18 17 37 37 H 1.07999 * 119.99941 * 180.25946 * 20 19 18 38 38 H 1.08005 * 120.00230 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.99734 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.46672 * 300.16854 * 24 23 18 41 41 H 1.09003 * 109.47300 * 60.16507 * 24 23 18 42 42 H 0.96701 * 114.00009 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.58464 * 173.64438 * 26 14 13 44 44 H 1.08999 * 109.58714 * 294.07790 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8755 -0.6822 0.8909 11 6 4.0222 -2.6368 -0.0047 12 6 5.5522 -2.6382 0.0290 13 6 6.0870 -1.9322 -1.2263 14 7 5.4866 -0.5933 -1.3009 15 6 6.2631 0.5018 -1.4194 16 8 5.7552 1.6012 -1.4851 17 6 7.7626 0.3604 -1.4703 18 6 8.3915 1.7233 -1.6044 19 6 8.7256 2.2104 -2.8545 20 6 9.2970 3.4628 -2.9780 21 6 9.5400 4.2260 -1.8510 22 6 9.2109 3.7368 -0.6010 23 6 8.6384 2.4844 -0.4775 24 6 8.2801 1.9508 0.8856 25 8 8.6261 2.9159 1.8810 26 6 4.0232 -0.4714 -1.2500 27 1 -0.4850 0.8401 0.0004 28 1 3.6392 -3.1604 0.8713 29 1 3.6787 -3.1407 -0.9080 30 1 5.8970 -2.1126 0.9196 31 1 5.9148 -3.6658 0.0499 32 1 5.8160 -2.5041 -2.1138 33 1 7.1715 -1.8434 -1.1633 34 1 8.0408 -0.2536 -2.3269 35 1 8.1141 -0.1137 -0.5539 36 1 8.5355 1.6144 -3.7349 37 1 9.5542 3.8451 -3.9547 38 1 9.9870 5.2045 -1.9475 39 1 9.4011 4.3328 0.2794 40 1 7.2090 1.7529 0.9282 41 1 8.8280 1.0266 1.0695 42 1 8.4225 2.6389 2.7849 43 1 3.7457 0.5816 -1.2025 44 1 3.5875 -0.9267 -2.1393 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:06 Heat of formation + Delta-G solvation = -63.064902 kcal Electronic energy + Delta-G solvation = -25540.864049 eV Core-core repulsion = 22036.747248 eV Total energy + Delta-G solvation = -3504.116800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30033 -39.10547 -36.96022 -36.67155 -33.62133 -32.91764 -31.95367 -31.36455 -30.57367 -28.01628 -26.04211 -25.22962 -24.47716 -22.07808 -22.04525 -21.06113 -19.68337 -18.50393 -17.57000 -17.05010 -16.77725 -16.51939 -15.53045 -15.40412 -15.04644 -14.82383 -14.49357 -14.22453 -13.97455 -13.80320 -13.58185 -13.07413 -13.03586 -12.92502 -12.65428 -12.36997 -12.19593 -12.13944 -11.91222 -11.38923 -11.10968 -11.00373 -10.84633 -10.64878 -10.44923 -10.38806 -10.13347 -9.81001 -9.59976 -9.24939 -9.13577 -8.73545 -8.62472 -8.55409 -8.09217 -6.12844 -4.14612 1.31125 1.43530 2.93467 3.34292 3.37333 3.46818 3.55577 3.80991 4.06507 4.40125 4.62064 4.75449 4.82925 4.95022 5.02379 5.10155 5.14167 5.19750 5.23453 5.28454 5.34500 5.44681 5.47191 5.54065 5.73182 5.75818 5.93122 5.98345 6.05068 6.08530 6.14758 6.34459 6.44227 6.49804 6.52481 6.59903 6.61805 6.71191 6.83566 7.00663 7.11305 7.39593 7.48521 7.69197 7.83371 8.43421 8.55997 8.90180 9.48822 10.99101 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.004823 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.266147 B = 5803.982587 C = 6331.931106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.881 3.119 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.077 0.923 9 C 0.005 3.995 10 H 0.029 0.971 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.108 3.892 14 N -0.609 5.609 15 C 0.506 3.494 16 O -0.535 6.535 17 C -0.106 4.106 18 C -0.057 4.057 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.097 4.097 23 C -0.075 4.075 24 C 0.114 3.886 25 O -0.569 6.569 26 C 0.102 3.898 27 H 0.265 0.735 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.383 0.617 43 H 0.079 0.921 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.378 -0.429 -1.970 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.711 3.289 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.095 0.905 9 C -0.014 4.014 10 H 0.047 0.953 11 C -0.138 4.138 12 C -0.175 4.175 13 C -0.016 4.016 14 N -0.343 5.343 15 C 0.293 3.707 16 O -0.412 6.412 17 C -0.146 4.146 18 C -0.058 4.058 19 C -0.125 4.125 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.115 4.115 23 C -0.075 4.075 24 C 0.037 3.963 25 O -0.375 6.375 26 C -0.019 4.019 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.230 0.770 43 H 0.097 0.903 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.112 0.595 -2.537 21.273 hybrid contribution 0.060 0.539 0.365 0.653 sum 21.173 1.133 -2.172 21.314 Atomic orbital electron populations 1.69888 1.06272 1.27167 1.49954 1.25036 0.94747 0.99074 0.94049 0.86972 0.79522 0.83413 0.78991 1.19975 1.22330 1.19004 1.20957 0.88226 0.94610 1.51768 0.90455 1.19477 0.96835 0.92166 0.92931 0.95299 1.21439 0.91990 0.98837 1.01572 1.22063 0.98640 0.99505 0.97243 1.21816 0.97161 0.83599 0.98988 1.48462 1.08355 1.05734 1.71722 1.20422 0.88530 0.84556 0.77232 1.90731 1.75235 1.25566 1.49626 1.20759 0.93142 0.95946 1.04743 1.19022 0.98609 0.95175 0.92966 1.20893 0.99070 0.96342 0.96238 1.21073 0.99742 0.94562 0.98512 1.21135 1.00842 0.99711 0.92656 1.20926 0.97770 0.95106 0.97658 1.19453 0.99396 0.95288 0.93352 1.20937 0.99282 0.90279 0.85811 1.86395 1.87126 1.45252 1.18723 1.22601 0.75719 1.02495 1.01046 0.92485 0.92211 0.92472 0.92078 0.91604 0.91368 0.90692 0.88020 0.88341 0.86083 0.86174 0.86211 0.85194 0.91814 0.92414 0.77016 0.90324 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 2 C 0.07 2.14 5.45 -17.82 -0.10 2.05 16 3 Si 0.88 23.52 24.31 -169.99 -4.13 19.39 16 4 H -0.27 -7.44 6.92 56.52 0.39 -7.05 16 5 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.26 -7.04 6.53 56.52 0.37 -6.67 16 7 C -0.52 -14.25 9.15 -34.44 -0.31 -14.57 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 10 H 0.03 0.70 7.21 -51.93 -0.37 0.33 16 11 C -0.10 -1.82 5.10 -26.69 -0.14 -1.95 16 12 C -0.14 -1.85 6.10 -26.38 -0.16 -2.02 16 13 C 0.11 1.39 6.37 -3.48 -0.02 1.37 16 14 N -0.61 -10.83 2.97 -172.50 -0.51 -11.34 16 15 C 0.51 9.06 7.35 -10.99 -0.08 8.97 16 16 O -0.53 -12.17 15.45 5.56 0.09 -12.08 16 17 C -0.11 -1.34 3.68 -29.04 -0.11 -1.45 16 18 C -0.06 -0.80 4.37 -104.63 -0.46 -1.26 16 19 C -0.11 -1.39 9.68 -39.58 -0.38 -1.77 16 20 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 21 C -0.13 -1.55 10.05 -39.58 -0.40 -1.94 16 22 C -0.10 -1.34 9.38 -39.58 -0.37 -1.71 16 23 C -0.07 -1.09 5.88 -104.63 -0.62 -1.70 16 24 C 0.11 1.50 6.21 36.01 0.22 1.72 16 25 O -0.57 -6.93 12.14 -35.23 -0.43 -7.35 16 26 C 0.10 2.26 5.10 -3.71 -0.02 2.24 16 27 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.71 5.93 -51.93 -0.31 0.41 16 34 H 0.10 1.00 7.84 -51.93 -0.41 0.59 16 35 H 0.10 1.02 6.40 -51.93 -0.33 0.69 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.13 1.73 7.01 -52.49 -0.37 1.37 16 40 H 0.06 0.98 7.79 -51.93 -0.40 0.58 16 41 H 0.06 0.60 7.52 -51.93 -0.39 0.21 16 42 H 0.38 2.89 9.12 45.56 0.42 3.31 16 43 H 0.08 1.99 2.32 -51.93 -0.12 1.87 16 44 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -35.48 345.60 -8.20 -43.68 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.69 Total: 3.10 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.51 Total: -13.93 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.26 Total: -38.02 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.34 Total: -19.43 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.13 Total: 19.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.48 -8.20 -43.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.381 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds