Wall clock time and date at job start Tue Mar 31 2020 07:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48493 * 109.46956 * 269.99712 * 3 2 1 5 5 H 1.48495 * 109.47076 * 29.99729 * 3 2 1 6 6 H 1.48497 * 109.46752 * 149.99713 * 3 2 1 7 7 C 1.37878 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00044 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49376 * 299.93776 * 9 7 2 11 11 C 1.53042 * 109.52304 * 179.85763 * 9 7 2 12 12 C 1.53040 * 109.53627 * 178.66707 * 11 9 7 13 13 C 1.52760 * 109.38219 * 61.23932 * 12 11 9 14 14 N 1.46921 * 109.00903 * 305.58856 * 13 12 11 15 15 C 1.34780 * 120.63059 * 233.58159 * 14 13 12 16 16 O 1.21280 * 120.00423 * 179.71638 * 15 14 13 17 17 C 1.50701 * 119.99795 * 359.72315 * 15 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 14 19 19 C 1.38262 * 119.99880 * 264.99949 * 18 17 15 20 20 C 1.38207 * 119.99901 * 180.02562 * 19 18 17 21 21 C 1.38262 * 120.00007 * 359.97438 * 20 19 18 22 22 C 1.38212 * 120.00011 * 359.97438 * 21 20 19 23 23 C 1.38210 * 119.99959 * 84.72709 * 18 17 15 24 24 C 1.50699 * 120.00166 * 359.97438 * 23 18 17 25 25 O 1.42901 * 109.47084 * 179.97438 * 24 23 18 26 26 C 1.46926 * 118.74177 * 53.30762 * 14 13 12 27 27 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.45457 * 298.68871 * 11 9 7 29 29 H 1.08996 * 109.45953 * 58.65742 * 11 9 7 30 30 H 1.09000 * 109.49238 * 181.31128 * 12 11 9 31 31 H 1.08995 * 109.49705 * 301.41188 * 12 11 9 32 32 H 1.08996 * 109.51231 * 185.70448 * 13 12 11 33 33 H 1.09004 * 109.43180 * 65.41890 * 13 12 11 34 34 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 35 35 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 36 36 H 1.07997 * 119.99789 * 359.97438 * 19 18 17 37 37 H 1.08002 * 120.00136 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.99804 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.99736 * 179.97438 * 22 21 20 40 40 H 1.08994 * 109.47617 * 300.00530 * 24 23 18 41 41 H 1.09000 * 109.46807 * 60.00789 * 24 23 18 42 42 H 0.96702 * 113.99538 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.58410 * 66.43252 * 26 14 13 44 44 H 1.09001 * 109.58875 * 186.70894 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6255 -2.5572 0.8924 11 6 2.2445 -3.6633 -0.0015 12 6 1.4801 -4.9886 0.0332 13 6 0.6008 -5.0995 -1.2110 14 7 -0.2569 -3.9098 -1.2984 15 6 -1.5938 -4.0342 -1.4164 16 8 -2.2915 -3.0444 -1.4824 17 6 -2.2216 -5.4033 -1.4661 18 6 -3.7165 -5.2660 -1.5986 19 6 -4.5166 -5.3019 -0.4716 20 6 -5.8876 -5.1765 -0.5932 21 6 -6.4589 -5.0144 -1.8418 22 6 -5.6590 -4.9774 -2.9683 23 6 -4.2871 -5.0983 -2.8462 24 6 -3.4145 -5.0524 -4.0740 25 8 -4.2315 -4.8735 -5.2326 26 6 0.3697 -2.5818 -1.2485 27 1 -0.4851 0.8400 -0.0004 28 1 2.8532 -3.6187 -0.9046 29 1 2.8891 -3.5930 0.8746 30 1 2.1885 -5.8167 0.0545 31 1 0.8523 -5.0233 0.9236 32 1 -0.0197 -5.9928 -1.1400 33 1 1.2325 -5.1603 -2.0972 34 1 -1.8295 -5.9520 -2.3225 35 1 -1.9867 -5.9444 -0.5495 36 1 -4.0703 -5.4289 0.5036 37 1 -6.5127 -5.2050 0.2871 38 1 -7.5303 -4.9168 -1.9368 39 1 -6.1054 -4.8513 -3.9436 40 1 -2.7140 -4.2215 -3.9910 41 1 -2.8607 -5.9872 -4.1612 42 1 -3.7352 -4.8352 -6.0617 43 1 0.9822 -2.4332 -2.1379 44 1 -0.4032 -1.8144 -1.2048 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256403.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:09 Heat of formation + Delta-G solvation = -70.433255 kcal Electronic energy + Delta-G solvation = -25221.784802 eV Core-core repulsion = 21717.348486 eV Total energy + Delta-G solvation = -3504.436316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.05836 -38.85048 -36.70189 -36.57312 -33.49485 -32.78666 -31.75642 -31.23790 -29.86817 -27.81300 -25.93439 -25.04556 -24.25727 -21.98289 -21.78417 -20.93527 -19.63675 -18.18752 -17.48108 -16.80452 -16.47621 -16.05136 -15.26340 -15.21418 -14.91847 -14.64396 -14.40981 -14.19630 -13.71505 -13.69310 -13.37929 -12.96588 -12.69488 -12.62019 -12.38673 -12.16477 -12.08620 -11.89506 -11.65479 -11.02544 -10.95986 -10.85181 -10.71997 -10.52914 -10.38662 -10.34332 -10.24726 -9.90664 -9.29695 -9.12422 -8.95066 -8.58629 -8.44921 -8.40195 -7.74100 -5.99937 -4.09237 1.44918 1.57047 3.24819 3.30449 3.37755 3.39810 3.66402 3.98720 4.14211 4.42401 4.78663 4.89434 5.07526 5.08166 5.15330 5.24482 5.28514 5.30782 5.37805 5.48165 5.49453 5.56870 5.65335 5.67207 5.86611 5.95762 6.09818 6.15291 6.21802 6.28858 6.56776 6.58681 6.65074 6.65858 6.74425 6.83490 6.95665 7.12110 7.16139 7.28928 7.53681 7.63862 7.86590 7.99557 8.26016 8.38389 8.88887 8.96119 9.56611 11.05119 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016517 B = 0.003969 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.836839 B = 7052.493009 C = 7537.346798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.108 3.892 14 N -0.608 5.608 15 C 0.505 3.495 16 O -0.526 6.526 17 C -0.108 4.108 18 C -0.053 4.053 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.098 4.098 23 C -0.076 4.076 24 C 0.116 3.884 25 O -0.570 6.570 26 C 0.113 3.887 27 H 0.264 0.736 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.381 0.619 43 H 0.040 0.960 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 -15.315 -5.582 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.016 4.016 14 N -0.342 5.342 15 C 0.291 3.709 16 O -0.402 6.402 17 C -0.148 4.148 18 C -0.054 4.054 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.116 4.116 23 C -0.076 4.076 24 C 0.039 3.961 25 O -0.375 6.375 26 C -0.007 4.007 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.228 0.772 43 H 0.058 0.942 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.995 -14.639 -5.166 17.027 hybrid contribution 1.087 0.905 -0.289 1.443 sum -5.908 -13.734 -5.456 15.915 Atomic orbital electron populations 1.69889 1.05728 1.26857 1.49218 1.25054 0.94863 0.99246 0.94828 0.86600 0.79807 0.83532 0.78119 1.20646 1.21195 1.19926 1.21075 0.92884 0.90150 1.51987 0.92396 1.18963 0.92612 0.92275 0.94071 0.95383 1.21620 0.98553 0.94081 1.00548 1.21876 0.98641 0.99160 0.97611 1.21557 0.93611 0.87852 0.98560 1.48534 1.05300 1.08866 1.71485 1.20265 0.82401 0.90431 0.77757 1.90751 1.60976 1.39335 1.49135 1.20789 0.92482 0.97171 1.04377 1.19046 0.93817 0.99903 0.92620 1.20917 0.93656 1.00167 0.97675 1.21073 0.94854 1.00493 0.97421 1.21110 0.99604 1.01086 0.92716 1.20892 0.92864 0.98925 0.98906 1.19417 0.94388 1.00806 0.93024 1.20925 0.91675 0.99879 0.83638 1.86413 1.37649 1.96622 1.16820 1.22269 0.98652 0.81414 0.98383 0.92636 0.93210 0.93041 0.92190 0.92169 0.91186 0.92097 0.88789 0.88304 0.86054 0.86227 0.86325 0.85334 0.91734 0.92594 0.77228 0.94174 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 11.39 55.43 0.63 -25.16 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.10 8.57 -34.44 -0.29 -14.40 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.14 5.11 -26.69 -0.14 -2.28 16 12 C -0.13 -2.07 6.06 -26.83 -0.16 -2.23 16 13 C 0.11 1.57 6.31 -3.94 -0.02 1.55 16 14 N -0.61 -11.75 2.98 -173.03 -0.52 -12.27 16 15 C 0.51 9.77 7.31 -10.98 -0.08 9.69 16 16 O -0.53 -12.78 15.45 5.56 0.09 -12.70 16 17 C -0.11 -1.51 3.68 -29.03 -0.11 -1.62 16 18 C -0.05 -0.81 4.37 -104.62 -0.46 -1.26 16 19 C -0.11 -1.53 9.68 -39.58 -0.38 -1.91 16 20 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 21 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 22 C -0.10 -1.41 9.38 -39.58 -0.37 -1.79 16 23 C -0.08 -1.15 5.88 -104.63 -0.62 -1.76 16 24 C 0.12 1.51 6.22 36.00 0.22 1.74 16 25 O -0.57 -6.79 12.14 -35.23 -0.43 -7.22 16 26 C 0.11 2.70 5.40 -3.71 -0.02 2.68 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.06 6.67 -51.93 -0.35 0.71 16 35 H 0.10 1.18 7.59 -51.93 -0.39 0.78 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.76 7.01 -52.49 -0.37 1.39 16 40 H 0.06 0.96 7.76 -51.93 -0.40 0.56 16 41 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 42 H 0.38 2.68 9.12 45.56 0.42 3.10 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.12 3.46 5.12 -51.93 -0.27 3.20 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -33.70 352.36 -9.29 -42.99 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.83 Total: 6.01 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.53 Total: -13.23 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.12 Total: -37.43 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.34 Total: -19.91 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.70 -9.29 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256403.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.444 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds