Wall clock time and date at job start Tue Mar 31 2020 08:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00120 * 2 1 4 4 H 1.48501 * 109.47246 * 270.00274 * 3 2 1 5 5 H 1.48499 * 109.46915 * 30.00279 * 3 2 1 6 6 H 1.48501 * 109.47066 * 150.00543 * 3 2 1 7 7 C 1.38704 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00438 * 359.97438 * 7 2 1 9 9 O 1.34815 * 119.99765 * 180.02562 * 7 2 1 10 10 C 1.35515 * 116.99988 * 185.05056 * 9 7 2 11 11 C 1.38833 * 120.16492 * 354.39362 * 10 9 7 12 12 C 1.38013 * 120.07729 * 179.97438 * 11 10 9 13 13 C 1.38577 * 120.40209 * 359.97438 * 12 11 10 14 14 C 1.37827 * 120.32173 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91985 * 359.97435 * 14 13 12 16 16 C 1.47530 * 120.19721 * 180.02562 * 15 14 13 17 17 O 1.21590 * 120.00229 * 180.02562 * 16 15 14 18 18 N 1.34775 * 120.00239 * 0.02562 * 16 15 14 19 19 C 1.46500 * 120.00385 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47261 * 180.02562 * 19 18 16 21 21 C 1.52997 * 109.47029 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47023 * 179.97438 * 21 20 19 23 23 C 1.53776 * 113.61544 * 274.13707 * 22 21 20 24 24 C 1.53959 * 87.01942 * 220.04768 * 23 22 21 25 25 C 1.53784 * 113.61216 * 176.52735 * 22 21 20 26 26 H 0.96995 * 119.99875 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.95683 * 359.97438 * 11 10 9 28 28 H 1.08006 * 119.80230 * 180.27524 * 12 11 10 29 29 H 1.08001 * 119.83901 * 180.02562 * 13 12 11 30 30 H 1.08006 * 120.04191 * 180.02562 * 14 13 12 31 31 H 0.97008 * 119.99718 * 0.02562 * 18 16 15 32 32 H 1.09001 * 109.47002 * 299.99912 * 19 18 16 33 33 H 1.08996 * 109.47024 * 60.00002 * 19 18 16 34 34 H 1.09001 * 109.46748 * 299.99709 * 20 19 18 35 35 H 1.08994 * 109.46886 * 59.99792 * 20 19 18 36 36 H 1.08993 * 109.47406 * 299.99854 * 21 20 19 37 37 H 1.09004 * 109.46831 * 60.00081 * 21 20 19 38 38 H 1.09002 * 112.84819 * 45.33882 * 22 21 20 39 39 H 1.08994 * 113.61804 * 334.57028 * 23 22 21 40 40 H 1.09004 * 113.61052 * 105.47220 * 23 22 21 41 41 H 1.08994 * 113.53751 * 270.81718 * 24 23 22 42 42 H 1.08997 * 113.74141 * 139.94772 * 24 23 22 43 43 H 1.08998 * 113.61570 * 254.52869 * 25 22 21 44 44 H 1.09004 * 113.61400 * 25.35666 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0086 -1.2013 -0.0005 8 1 1.4687 -2.1365 -0.0005 9 8 3.3568 -1.2013 0.0000 10 6 3.9720 -2.4040 -0.1069 11 6 3.2243 -3.5737 -0.0936 12 6 3.8527 -4.7976 -0.2031 13 6 5.2311 -4.8696 -0.3274 14 6 5.9894 -3.7188 -0.3424 15 6 5.3674 -2.4731 -0.2325 16 6 6.1732 -1.2374 -0.2485 17 8 5.6280 -0.1548 -0.1521 18 7 7.5135 -1.3084 -0.3700 19 6 8.3138 -0.0813 -0.3853 20 6 9.7940 -0.4395 -0.5326 21 6 10.6295 0.8421 -0.5492 22 6 12.1098 0.4838 -0.6960 23 6 12.8052 0.1785 0.6412 24 6 14.0194 0.9510 0.0940 25 6 13.0319 1.7094 -0.8085 26 1 -0.4850 0.8400 0.0004 27 1 2.1496 -3.5258 0.0025 28 1 3.2663 -5.7045 -0.1968 29 1 5.7133 -5.8321 -0.4129 30 1 7.0633 -3.7801 -0.4399 31 1 7.9485 -2.1720 -0.4472 32 1 8.0060 0.5427 -1.2244 33 1 8.1623 0.4629 0.5469 34 1 10.1019 -1.0636 0.3063 35 1 9.9450 -0.9834 -1.4650 36 1 10.3215 1.4658 -1.3882 37 1 10.4785 1.3864 0.3830 38 1 12.2890 -0.2693 -1.4633 39 1 12.3328 0.6580 1.4985 40 1 12.9974 -0.8825 0.8010 41 1 14.7215 0.3249 -0.4564 42 1 14.5076 1.5834 0.8355 43 1 13.4069 1.8825 -1.8172 44 1 12.6210 2.6086 -0.3494 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855801955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:32 Heat of formation + Delta-G solvation = -52.555422 kcal Electronic energy + Delta-G solvation = -23859.748046 eV Core-core repulsion = 20356.086971 eV Total energy + Delta-G solvation = -3503.661075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39621 -40.06212 -39.68513 -38.15699 -36.51643 -34.52879 -33.72946 -31.96333 -30.79352 -28.47488 -27.24259 -26.43798 -25.02228 -23.85992 -22.81255 -22.31042 -21.45093 -20.20963 -19.80231 -19.39391 -17.96022 -17.20760 -16.81665 -16.48651 -16.29895 -15.93601 -15.89431 -15.66901 -15.48953 -15.26788 -15.10263 -14.41009 -14.18634 -14.03857 -13.95112 -13.61071 -13.27389 -13.14490 -12.99317 -12.83675 -12.60456 -12.47428 -12.36143 -12.16820 -12.02991 -11.70230 -11.53767 -11.36890 -11.02019 -10.97740 -10.92798 -10.64606 -10.14722 -9.81563 -9.14635 -8.58769 -6.27317 0.05666 0.65045 1.23354 1.28828 1.57190 2.03034 2.25187 2.29082 2.75352 3.02351 3.16910 3.68824 3.78685 3.81579 3.91204 4.01583 4.03186 4.14016 4.14961 4.26734 4.39036 4.48928 4.58143 4.64093 4.74688 4.78934 4.82152 4.86589 4.92769 4.95921 5.03591 5.08238 5.12082 5.13288 5.27824 5.28854 5.36078 5.47471 5.48451 5.54445 5.62155 5.69562 5.70201 5.83648 6.16006 6.66221 6.78636 7.40705 7.58823 8.51790 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.003182 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.927809 B = 8798.733255 C =10468.509165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.403 4.403 8 H 0.092 0.908 9 O -0.210 6.210 10 C 0.159 3.841 11 C -0.251 4.251 12 C -0.043 4.043 13 C -0.189 4.189 14 C -0.029 4.029 15 C -0.234 4.234 16 C 0.551 3.449 17 O -0.577 6.577 18 N -0.715 5.715 19 C 0.119 3.881 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.106 4.106 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.143 4.143 26 H 0.286 0.714 27 H 0.115 0.885 28 H 0.151 0.849 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.414 0.586 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.597 -6.243 -1.517 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.479 4.479 8 H 0.110 0.890 9 O -0.114 6.114 10 C 0.106 3.894 11 C -0.271 4.271 12 C -0.061 4.061 13 C -0.207 4.207 14 C -0.048 4.048 15 C -0.239 4.239 16 C 0.341 3.659 17 O -0.457 6.457 18 N -0.370 5.370 19 C -0.005 4.005 20 C -0.150 4.150 21 C -0.145 4.145 22 C -0.124 4.124 23 C -0.177 4.177 24 C -0.180 4.180 25 C -0.181 4.181 26 H 0.096 0.904 27 H 0.132 0.868 28 H 0.169 0.831 29 H 0.186 0.814 30 H 0.185 0.815 31 H 0.252 0.748 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 27.114 -5.086 -1.420 27.623 hybrid contribution -0.637 0.641 0.033 0.904 sum 26.477 -4.445 -1.387 26.883 Atomic orbital electron populations 1.69680 1.06385 1.29557 1.49479 1.25040 0.95647 1.01404 0.95370 0.85414 0.79014 0.78582 0.79019 1.20203 1.18893 1.19222 1.20906 0.78400 0.96294 1.52306 0.89037 1.83771 1.20794 1.26997 1.79867 1.19806 0.92178 0.85716 0.91709 1.21332 1.00575 0.92965 1.12188 1.21452 0.95962 0.96150 0.92506 1.21251 0.93005 0.99425 1.07021 1.21370 1.00853 0.89261 0.93295 1.19317 0.90047 0.95072 1.19443 1.18456 0.82929 0.88644 0.75913 1.90837 1.72564 1.31381 1.50924 1.45670 1.05017 1.10852 1.75440 1.21394 0.91770 0.86554 1.00749 1.21684 0.90289 0.99141 1.03883 1.21478 0.94265 0.96713 1.02034 1.22540 0.92875 0.98517 0.98513 1.23026 0.96981 1.00792 0.96895 1.22856 0.96518 0.99282 0.99387 1.22975 0.97394 0.97342 1.00349 0.90439 0.86755 0.83113 0.81441 0.81511 0.74771 0.93427 0.93484 0.89941 0.89821 0.91993 0.92140 0.88491 0.90582 0.91023 0.89634 0.91540 0.91336 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.35 13.96 21.62 0.30 -56.05 16 2 C 0.03 1.58 5.49 84.85 0.47 2.04 16 3 Si 0.96 51.70 28.62 68.60 1.96 53.66 16 4 H -0.28 -14.75 7.11 99.48 0.71 -14.04 16 5 H -0.26 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -15.62 7.11 99.48 0.71 -14.92 16 7 C -0.40 -24.99 9.95 67.93 0.68 -24.31 16 8 H 0.09 5.72 5.44 -2.91 -0.02 5.71 16 9 O -0.21 -12.47 6.67 0.89 0.01 -12.46 16 10 C 0.16 7.82 6.66 22.91 0.15 7.97 16 11 C -0.25 -10.81 9.16 22.36 0.20 -10.60 16 12 C -0.04 -1.30 10.03 22.30 0.22 -1.08 16 13 C -0.19 -4.61 10.03 22.25 0.22 -4.39 16 14 C -0.03 -0.79 9.53 22.52 0.21 -0.57 16 15 C -0.23 -9.31 5.89 -19.99 -0.12 -9.43 16 16 C 0.55 22.54 7.76 86.69 0.67 23.22 16 17 O -0.58 -30.54 15.17 16.90 0.26 -30.28 16 18 N -0.72 -19.66 5.51 -466.27 -2.57 -22.23 16 19 C 0.12 2.97 5.67 86.38 0.49 3.46 16 20 C -0.11 -1.68 5.33 30.59 0.16 -1.52 16 21 C -0.11 -1.56 5.04 30.59 0.15 -1.40 16 22 C -0.11 -1.26 3.64 -10.27 -0.04 -1.30 16 23 C -0.14 -1.60 7.65 31.18 0.24 -1.36 16 24 C -0.14 -1.53 8.09 31.18 0.25 -1.28 16 25 C -0.14 -1.70 7.65 31.12 0.24 -1.47 16 26 H 0.29 16.27 8.31 -92.71 -0.77 15.50 16 27 H 0.11 5.39 5.64 -2.91 -0.02 5.37 16 28 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.17 2.67 6.40 -2.91 -0.02 2.65 16 31 H 0.41 7.64 6.50 -92.70 -0.60 7.04 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.96 7.87 -2.38 -0.02 0.94 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.95 7.92 -2.39 -0.02 0.93 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.97 8.10 -2.38 -0.02 0.95 16 Total: -1.00 -80.59 362.50 4.57 -76.02 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.40 Total: 13.34 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 4.21 Total: -22.01 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -2.27 Total: -78.27 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: 0.26 Total: -42.74 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 1.96 Total: 53.66 kcal Total: -80.59 4.57 -76.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855801955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.466 kcal (2) G-P(sol) polarization free energy of solvation -80.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds