Wall clock time and date at job start Tue Mar 31 2020 08:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 115.56128 * 2 1 4 4 C 1.53072 * 117.51509 * 214.29787 * 2 1 3 5 5 C 1.53000 * 59.98504 * 252.52491 * 4 2 1 6 6 C 1.53004 * 117.49279 * 252.49958 * 5 4 2 7 7 N 1.46495 * 117.50042 * 107.50412 * 5 4 2 8 8 C 1.34778 * 119.99831 * 203.48607 * 7 5 4 9 9 O 1.21281 * 120.00226 * 5.25523 * 8 7 5 10 10 C 1.50697 * 119.99873 * 185.26128 * 8 7 5 11 11 C 1.50697 * 109.47119 * 179.97438 * 10 8 7 12 12 C 1.38299 * 119.93208 * 269.72312 * 11 10 8 13 13 C 1.38098 * 120.07401 * 180.28018 * 12 11 10 14 14 C 1.38881 * 119.92778 * 359.97438 * 13 12 11 15 15 O 1.35757 * 120.06975 * 180.02562 * 14 13 12 16 16 C 1.34828 * 116.99999 * 174.15702 * 15 14 13 17 17 H 1.08004 * 120.00059 * 5.15848 * 16 15 14 18 18 C 1.38654 * 119.99867 * 185.16756 * 16 15 14 19 19 N 1.31555 * 120.00124 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99777 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47446 * 59.99663 * 20 18 16 22 22 H 1.48502 * 109.47059 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47302 * 299.99302 * 20 18 16 24 24 C 1.38879 * 119.86150 * 0.02562 * 14 13 12 25 25 C 1.38095 * 119.93261 * 359.97438 * 24 14 13 26 26 H 1.08993 * 109.47586 * 274.30728 * 1 2 3 27 27 H 1.09003 * 109.47016 * 34.31150 * 1 2 3 28 28 H 1.09003 * 109.47233 * 154.31017 * 1 2 3 29 29 H 1.09007 * 109.47118 * 205.69005 * 3 2 1 30 30 H 1.08996 * 109.47451 * 325.68776 * 3 2 1 31 31 H 1.09004 * 109.47345 * 85.69239 * 3 2 1 32 32 H 1.09002 * 117.49682 * 145.03428 * 4 2 1 33 33 H 1.09005 * 117.51319 * 0.02562 * 4 2 1 34 34 H 1.09002 * 109.46715 * 273.45853 * 6 5 4 35 35 H 1.08996 * 109.47667 * 33.46398 * 6 5 4 36 36 H 1.09001 * 109.46691 * 153.46360 * 6 5 4 37 37 H 0.97003 * 120.00202 * 23.47953 * 7 5 4 38 38 H 1.08993 * 109.47383 * 59.99476 * 10 8 7 39 39 H 1.09003 * 109.47155 * 299.99689 * 10 8 7 40 40 H 1.08004 * 119.96355 * 0.27874 * 12 11 10 41 41 H 1.07995 * 120.03953 * 180.02562 * 13 12 11 42 42 H 0.97000 * 120.00047 * 180.02562 * 19 18 16 43 43 H 1.08005 * 120.03646 * 179.97438 * 24 14 13 44 44 H 1.07999 * 119.96552 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2371 -1.1215 -0.7650 5 6 2.2364 -1.1210 0.7650 6 6 3.5487 -0.7758 1.4719 7 7 1.3961 -2.1123 1.4414 8 6 0.9738 -1.8900 2.7018 9 8 1.2084 -0.8298 3.2420 10 6 0.2100 -2.9590 3.4400 11 6 -0.1425 -2.4632 4.8188 12 6 0.7234 -2.6851 5.8741 13 6 0.4007 -2.2371 7.1399 14 6 -0.7947 -1.5627 7.3524 15 8 -1.1146 -1.1206 8.5955 16 6 -2.2285 -0.3697 8.7103 17 1 -2.8660 -0.2146 7.8523 18 6 -2.5556 0.2035 9.9297 19 7 -1.7792 0.0143 10.9748 20 14 -4.0985 1.2444 10.0885 21 1 -5.2874 0.4224 9.7480 22 1 -4.2214 1.7376 11.4838 23 1 -4.0136 2.4003 9.1601 24 6 -1.6620 -1.3415 6.2906 25 6 -1.3336 -1.7919 5.0272 26 1 -0.3634 0.0772 1.0247 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3634 -0.9261 -0.4455 29 1 3.1824 1.3084 -0.4455 30 1 1.5812 2.0743 -0.5793 31 1 2.2773 1.7413 1.0248 32 1 3.1724 -0.8756 -1.2680 33 1 1.6123 -1.8592 -1.2687 34 1 4.1488 -1.6787 1.5852 35 1 4.0995 -0.0455 0.8792 36 1 3.3327 -0.3574 2.4549 37 1 1.1436 -2.9285 0.9821 38 1 0.8260 -3.8543 3.5227 39 1 -0.7034 -3.1956 2.8941 40 1 1.6530 -3.2093 5.7081 41 1 1.0774 -2.4102 7.9635 42 1 -2.0083 0.4150 11.8279 43 1 -2.5925 -0.8177 6.4527 44 1 -2.0075 -1.6198 4.2010 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856133873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:30 Heat of formation + Delta-G solvation = -23.432640 kcal Electronic energy + Delta-G solvation = -24286.774005 eV Core-core repulsion = 20784.375788 eV Total energy + Delta-G solvation = -3502.398217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31112 -39.02237 -38.05212 -36.35469 -33.41750 -32.39808 -31.30836 -30.11791 -30.05219 -28.20435 -27.06943 -26.49088 -25.05744 -21.92718 -21.81448 -20.89435 -20.05562 -18.59850 -17.92131 -16.99731 -16.79215 -16.07577 -15.36977 -14.74742 -14.70218 -14.43551 -14.12770 -13.94630 -13.81419 -13.56001 -13.32728 -13.24077 -12.84410 -12.64247 -12.52392 -12.43190 -12.38121 -12.17917 -12.01665 -11.79442 -11.47049 -11.29098 -11.20410 -10.78491 -10.71161 -10.59156 -10.39428 -10.29783 -10.17006 -9.46594 -9.27450 -8.80596 -8.76500 -8.09014 -7.10309 -6.39594 -3.98191 2.30721 2.31886 2.82077 3.11379 3.16555 3.19777 3.20924 3.46551 4.01514 4.36522 4.46592 4.59428 4.64592 4.89782 5.02261 5.13730 5.24198 5.31751 5.38312 5.40365 5.43450 5.49343 5.55595 5.59787 5.62733 5.72004 5.73311 5.74912 5.78629 5.85876 5.90870 6.04977 6.13099 6.19690 6.27467 6.47784 6.56699 6.76376 6.97536 7.11048 7.29805 7.43032 7.49999 7.56085 7.90177 8.05706 8.43590 9.06090 9.77094 10.78602 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.021527 B = 0.002937 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.367032 B = 9529.655475 C =10057.037262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.123 4.123 3 C -0.114 4.114 4 C -0.172 4.172 5 C 0.115 3.885 6 C -0.125 4.125 7 N -0.710 5.710 8 C 0.512 3.488 9 O -0.510 6.510 10 C -0.080 4.080 11 C -0.168 4.168 12 C -0.059 4.059 13 C -0.191 4.191 14 C 0.157 3.843 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.232 4.232 25 C -0.056 4.056 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.397 0.603 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 -4.426 -23.292 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.125 4.125 3 C -0.171 4.171 4 C -0.209 4.209 5 C 0.027 3.973 6 C -0.183 4.183 7 N -0.363 5.363 8 C 0.299 3.701 9 O -0.383 6.383 10 C -0.120 4.120 11 C -0.169 4.169 12 C -0.078 4.078 13 C -0.211 4.211 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.252 4.252 25 C -0.075 4.075 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.587 -3.610 -22.362 23.590 hybrid contribution -0.944 0.077 -0.302 0.994 sum 5.643 -3.533 -22.664 23.622 Atomic orbital electron populations 1.21239 0.91830 1.01288 1.02323 1.21996 0.95373 0.91764 1.03360 1.21358 0.99478 0.93829 1.02472 1.23652 1.02846 1.01737 0.92681 1.20715 0.93011 0.93665 0.89889 1.21509 0.93344 1.01380 1.02070 1.45485 1.53374 1.22183 1.15282 1.21019 0.79178 0.89232 0.80685 1.90727 1.54776 1.26007 1.66781 1.20415 1.00225 0.96812 0.94552 1.18618 0.97426 1.08206 0.92688 1.20390 0.97305 0.98241 0.91848 1.20150 0.96971 1.06673 0.97285 1.19377 0.92515 0.92146 0.85661 1.83976 1.42392 1.59507 1.22344 1.21278 0.99647 1.28212 0.97601 0.89168 1.25274 0.99281 0.97519 0.94435 1.70031 1.36944 1.42202 1.00763 0.85794 0.80164 0.79651 0.77897 1.19534 1.20302 1.19501 1.21097 1.02308 1.08743 0.93009 1.20493 0.95389 0.95783 0.95797 0.91831 0.92360 0.92856 0.92507 0.92250 0.91577 0.88042 0.88597 0.92356 0.91571 0.90242 0.76834 0.89048 0.89224 0.87446 0.86587 0.92028 0.85648 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.31 37.16 0.35 -0.77 16 2 C -0.12 -1.21 2.70 -154.47 -0.42 -1.63 16 3 C -0.11 -1.06 8.66 37.16 0.32 -0.74 16 4 C -0.17 -1.31 9.45 -26.69 -0.25 -1.56 16 5 C 0.11 1.16 2.40 -131.82 -0.32 0.85 16 6 C -0.13 -1.33 9.08 37.16 0.34 -0.99 16 7 N -0.71 -7.19 4.85 -47.61 -0.23 -7.42 16 8 C 0.51 7.05 7.62 -10.99 -0.08 6.97 16 9 O -0.51 -9.46 14.61 5.56 0.08 -9.38 16 10 C -0.08 -1.01 5.83 -29.04 -0.17 -1.18 16 11 C -0.17 -2.97 4.38 -104.58 -0.46 -3.43 16 12 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 13 C -0.19 -4.26 9.99 -39.39 -0.39 -4.65 16 14 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 15 O -0.18 -5.27 9.76 0.03 0.00 -5.27 16 16 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 17 H 0.09 2.41 5.21 -52.48 -0.27 2.13 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 20 Si 0.94 21.03 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.23 -5.30 9.17 -39.40 -0.36 -5.66 16 25 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 28 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 29 H 0.06 0.44 7.23 -51.93 -0.38 0.06 16 30 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.66 8.05 -51.93 -0.42 0.24 16 33 H 0.10 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.59 6.77 -51.93 -0.35 0.23 16 36 H 0.08 1.10 6.75 -51.93 -0.35 0.75 16 37 H 0.40 2.79 8.83 -40.82 -0.36 2.43 16 38 H 0.09 0.93 8.08 -51.93 -0.42 0.52 16 39 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 44 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -34.10 366.72 -7.75 -41.85 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.59 Total: 5.89 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -2.28 Total: -22.04 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.53 Total: -32.58 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.65 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.10 -7.75 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856133873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.421 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds