Wall clock time and date at job start Tue Mar 31 2020 08:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 115.55107 * 2 1 4 4 C 1.53001 * 117.49645 * 214.29823 * 2 1 3 5 5 C 1.52998 * 117.50144 * 145.67558 * 2 1 3 6 6 C 1.53000 * 117.49624 * 359.97070 * 5 2 1 7 7 N 1.46497 * 117.50038 * 214.97929 * 5 2 1 8 8 C 1.34781 * 120.00144 * 64.73435 * 7 5 2 9 9 O 1.21287 * 119.99802 * 4.37714 * 8 7 5 10 10 C 1.50696 * 120.00280 * 184.37290 * 8 7 5 11 11 C 1.50692 * 109.47548 * 180.02562 * 10 8 7 12 12 C 1.38302 * 119.93211 * 269.73227 * 11 10 8 13 13 C 1.38097 * 120.06954 * 180.27982 * 12 11 10 14 14 C 1.38881 * 119.93396 * 359.97438 * 13 12 11 15 15 O 1.35745 * 120.07287 * 180.02562 * 14 13 12 16 16 C 1.34828 * 117.00249 * 176.58249 * 15 14 13 17 17 H 1.08002 * 119.99527 * 5.26726 * 16 15 14 18 18 C 1.38651 * 120.00258 * 185.26543 * 16 15 14 19 19 N 1.31555 * 119.99884 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00107 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46897 * 60.00206 * 20 18 16 22 22 H 1.48498 * 109.47203 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47256 * 299.99969 * 20 18 16 24 24 C 1.38884 * 119.85890 * 0.02562 * 14 13 12 25 25 C 1.38098 * 119.92879 * 359.97438 * 24 14 13 26 26 H 1.09006 * 109.47262 * 274.32522 * 1 2 3 27 27 H 1.09004 * 109.47183 * 34.32681 * 1 2 3 28 28 H 1.08992 * 109.47613 * 154.32946 * 1 2 3 29 29 H 1.08998 * 109.47659 * 205.67126 * 3 2 1 30 30 H 1.08998 * 109.47402 * 325.67930 * 3 2 1 31 31 H 1.09007 * 109.46705 * 85.66883 * 3 2 1 32 32 H 1.08998 * 117.49716 * 145.02137 * 4 2 1 33 33 H 1.08996 * 117.49906 * 359.97438 * 4 2 1 34 34 H 1.08995 * 109.47652 * 280.67579 * 6 5 2 35 35 H 1.09006 * 109.46855 * 40.67505 * 6 5 2 36 36 H 1.08999 * 109.46990 * 160.67021 * 6 5 2 37 37 H 0.96993 * 120.00174 * 244.74111 * 7 5 2 38 38 H 1.09011 * 109.46927 * 60.00107 * 10 8 7 39 39 H 1.09004 * 109.47507 * 300.00567 * 10 8 7 40 40 H 1.08002 * 119.96588 * 0.27156 * 12 11 10 41 41 H 1.08002 * 120.03733 * 179.97438 * 13 12 11 42 42 H 0.97004 * 119.99975 * 179.97438 * 19 18 16 43 43 H 1.07994 * 120.03321 * 179.97438 * 24 14 13 44 44 H 1.08004 * 119.96677 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1212 -0.7648 5 6 2.2365 -1.1208 0.7652 6 6 1.3588 -2.1554 1.4725 7 7 3.4932 -0.7902 1.4416 8 6 3.4977 0.0887 2.4633 9 8 2.4523 0.5456 2.8749 10 6 4.8017 0.5038 3.0945 11 6 4.5321 1.4856 4.2055 12 6 4.5029 2.8417 3.9359 13 6 4.2618 3.7443 4.9529 14 6 4.0480 3.2889 6.2474 15 8 3.8102 4.1736 7.2492 16 6 3.5410 3.6615 8.4670 17 1 3.6052 2.5960 8.6310 18 6 3.1817 4.5028 9.5089 19 7 3.1040 5.8008 9.3093 20 14 2.8080 3.7933 11.1960 21 1 4.0046 3.0785 11.7084 22 1 2.4511 4.8932 12.1277 23 1 1.6707 2.8440 11.0930 24 6 4.0779 1.9264 6.5149 25 6 4.3195 1.0289 5.4935 26 1 -0.3634 0.0775 1.0248 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3634 -0.9261 -0.4451 29 1 3.1822 1.3088 -0.4452 30 1 1.5809 2.0743 -0.5794 31 1 2.2765 1.7416 1.0248 32 1 3.1714 -0.8755 -1.2681 33 1 1.6111 -1.8590 -1.2675 34 1 0.9949 -1.7413 2.4128 35 1 0.5117 -2.4096 0.8354 36 1 1.9446 -3.0525 1.6730 37 1 4.3221 -1.2038 1.1540 38 1 5.4370 0.9714 2.3421 39 1 5.3048 -0.3741 3.5000 40 1 4.6689 3.1953 2.9290 41 1 4.2395 4.8033 4.7420 42 1 2.8522 6.3894 10.0381 43 1 3.9124 1.5692 7.5205 44 1 4.3434 -0.0308 5.7009 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856133874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:33 Heat of formation + Delta-G solvation = -22.026718 kcal Electronic energy + Delta-G solvation = -24411.614222 eV Core-core repulsion = 20909.276971 eV Total energy + Delta-G solvation = -3502.337251 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.36779 -39.00870 -37.95804 -36.33998 -33.44952 -32.39562 -31.27778 -30.14444 -30.03425 -28.14748 -27.02136 -26.49305 -25.06291 -21.92759 -21.78225 -20.94228 -20.07234 -18.49785 -17.92459 -16.98693 -16.76143 -16.05619 -15.47818 -14.83417 -14.60239 -14.36824 -14.19670 -13.93515 -13.69881 -13.54977 -13.33690 -13.28535 -12.84634 -12.63786 -12.55364 -12.43558 -12.24891 -12.14980 -11.97378 -11.75860 -11.44812 -11.23168 -11.19563 -10.79086 -10.71453 -10.58990 -10.39581 -10.35949 -9.87475 -9.50080 -9.27350 -8.89755 -8.76966 -8.09089 -7.10159 -6.39980 -3.98551 2.30686 2.32148 2.85459 3.11985 3.16394 3.19884 3.20702 3.44580 4.01220 4.38837 4.48316 4.60078 4.70313 4.95052 5.05078 5.14070 5.26225 5.31364 5.37715 5.43413 5.45902 5.51055 5.54567 5.60319 5.64437 5.72067 5.78726 5.79117 5.82667 5.90126 5.91754 6.05489 6.15475 6.27327 6.28990 6.47680 6.58495 6.76225 6.97521 7.10853 7.29697 7.43166 7.49985 7.56760 7.90180 8.05413 8.44938 9.05747 9.76776 10.78207 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.002893 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.711507 B = 9675.537190 C = 9792.293728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.107 4.107 3 C -0.120 4.120 4 C -0.173 4.173 5 C 0.106 3.894 6 C -0.121 4.121 7 N -0.712 5.712 8 C 0.512 3.488 9 O -0.508 6.508 10 C -0.081 4.081 11 C -0.168 4.168 12 C -0.059 4.059 13 C -0.192 4.192 14 C 0.157 3.843 15 O -0.178 6.178 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.233 4.233 25 C -0.056 4.056 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -15.085 -18.753 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.108 4.108 3 C -0.177 4.177 4 C -0.211 4.211 5 C 0.018 3.982 6 C -0.179 4.179 7 N -0.365 5.365 8 C 0.299 3.701 9 O -0.381 6.381 10 C -0.120 4.120 11 C -0.169 4.169 12 C -0.078 4.078 13 C -0.211 4.211 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.252 4.252 25 C -0.074 4.074 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.232 0.768 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.002 -14.248 -18.270 23.169 hybrid contribution 0.266 -0.700 0.653 0.994 sum 0.264 -14.948 -17.617 23.105 Atomic orbital electron populations 1.21352 0.91767 1.01480 1.02510 1.21815 0.95105 0.91749 1.02089 1.21423 0.99114 0.93712 1.03479 1.23662 1.02804 1.01919 0.92692 1.20693 0.88153 0.99524 0.89782 1.21490 0.98307 0.96921 1.01222 1.45460 1.08763 1.46540 1.35725 1.21019 0.92162 0.77975 0.78934 1.90734 1.33604 1.53328 1.60473 1.20420 0.94436 0.99641 0.97550 1.18611 1.12198 0.92947 0.93181 1.20378 0.98046 0.92158 0.97176 1.20140 1.10770 0.99484 0.90711 1.19378 0.92162 0.89109 0.89049 1.83977 1.75736 1.32027 1.16431 1.21278 1.47850 0.93867 0.83768 0.89152 1.25276 0.96517 0.95191 0.99516 1.70032 1.44274 1.02516 1.33090 0.85794 0.79191 0.78389 0.80131 1.19523 1.20299 1.19506 1.21099 1.11060 0.93026 1.00014 1.20498 0.96971 0.97830 0.92150 0.91552 0.92142 0.92605 0.93064 0.92442 0.90469 0.88592 0.88168 0.91263 0.91591 0.92304 0.76800 0.89136 0.89192 0.87495 0.86609 0.92023 0.85636 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 8.73 37.16 0.32 -0.79 16 2 C -0.11 -1.12 2.46 -154.51 -0.38 -1.50 16 3 C -0.12 -1.39 8.83 37.16 0.33 -1.06 16 4 C -0.17 -1.39 9.43 -26.73 -0.25 -1.64 16 5 C 0.11 1.07 2.21 -131.82 -0.29 0.78 16 6 C -0.12 -1.19 9.35 37.16 0.35 -0.85 16 7 N -0.71 -7.20 5.09 -47.61 -0.24 -7.44 16 8 C 0.51 7.00 6.55 -10.99 -0.07 6.93 16 9 O -0.51 -9.30 14.22 5.55 0.08 -9.22 16 10 C -0.08 -1.01 5.83 -29.04 -0.17 -1.18 16 11 C -0.17 -2.95 4.38 -104.58 -0.46 -3.41 16 12 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 13 C -0.19 -4.25 9.99 -39.39 -0.39 -4.64 16 14 C 0.16 3.95 6.65 -39.10 -0.26 3.69 16 15 O -0.18 -5.25 9.76 0.07 0.00 -5.25 16 16 C -0.39 -11.26 9.48 30.88 0.29 -10.96 16 17 H 0.09 2.41 5.20 -52.49 -0.27 2.13 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.89 13.67 55.48 0.76 -25.13 16 20 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 25 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 28 H 0.05 0.44 7.29 -51.93 -0.38 0.06 16 29 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 30 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 31 H 0.08 1.14 5.76 -51.92 -0.30 0.84 16 32 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 33 H 0.10 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.54 6.99 -51.93 -0.36 0.18 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.40 2.80 8.83 -40.82 -0.36 2.44 16 38 H 0.09 0.92 8.08 -51.92 -0.42 0.50 16 39 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.13 2.85 5.62 -52.49 -0.30 2.56 16 44 H 0.10 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -33.93 364.17 -7.70 -41.63 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.55 Total: 6.21 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -2.21 Total: -22.25 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.52 Total: -32.58 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.93 -7.70 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856133874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.601 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds