Wall clock time and date at job start Tue Mar 31 2020 08:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 115.56150 * 2 1 4 4 C 1.53003 * 117.50020 * 214.31282 * 2 1 3 5 5 C 1.52996 * 59.99958 * 252.51311 * 4 2 1 6 6 C 1.53000 * 117.49578 * 252.48773 * 5 4 2 7 7 N 1.46497 * 117.50496 * 107.49182 * 5 4 2 8 8 C 1.34771 * 119.99876 * 65.27046 * 7 5 4 9 9 O 1.21282 * 120.00389 * 355.00243 * 8 7 5 10 10 C 1.50707 * 120.00159 * 174.99470 * 8 7 5 11 11 C 1.50697 * 109.47029 * 180.02562 * 10 8 7 12 12 C 1.38323 * 119.96791 * 90.00585 * 11 10 8 13 13 C 1.38272 * 120.13926 * 179.97438 * 12 11 10 14 14 C 1.38130 * 120.07015 * 0.02562 * 13 12 11 15 15 C 1.38850 * 119.92615 * 359.97438 * 14 13 12 16 16 O 1.35754 * 120.06622 * 179.97438 * 15 14 13 17 17 C 1.34837 * 116.99838 * 354.22264 * 16 15 14 18 18 H 1.07993 * 119.99909 * 5.08268 * 17 16 15 19 19 C 1.38659 * 119.99641 * 185.07807 * 17 16 15 20 20 N 1.31554 * 119.99354 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00327 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47314 * 89.99555 * 21 19 17 23 23 H 1.48496 * 109.47256 * 209.99713 * 21 19 17 24 24 H 1.48504 * 109.47227 * 329.99811 * 21 19 17 25 25 C 1.38081 * 119.96521 * 269.72346 * 11 10 8 26 26 H 1.08992 * 109.47064 * 274.30815 * 1 2 3 27 27 H 1.09002 * 109.46934 * 34.31225 * 1 2 3 28 28 H 1.09004 * 109.47243 * 154.30682 * 1 2 3 29 29 H 1.09006 * 109.47552 * 205.68711 * 3 2 1 30 30 H 1.09000 * 109.47528 * 325.69100 * 3 2 1 31 31 H 1.09000 * 109.47046 * 85.69121 * 3 2 1 32 32 H 1.08999 * 117.49828 * 145.01805 * 4 2 1 33 33 H 1.09002 * 117.51915 * 359.97438 * 4 2 1 34 34 H 1.09001 * 109.47172 * 273.04214 * 6 5 4 35 35 H 1.09003 * 109.47559 * 33.04218 * 6 5 4 36 36 H 1.08998 * 109.47703 * 153.03920 * 6 5 4 37 37 H 0.96997 * 120.00006 * 245.27799 * 7 5 4 38 38 H 1.08996 * 109.46912 * 300.00905 * 10 8 7 39 39 H 1.08999 * 109.46526 * 59.99959 * 10 8 7 40 40 H 1.08002 * 119.93022 * 359.96985 * 12 11 10 41 41 H 1.08001 * 119.96383 * 179.97438 * 13 12 11 42 42 H 1.07997 * 120.03375 * 179.97438 * 14 13 12 43 43 H 0.97009 * 119.99591 * 180.02562 * 20 19 17 44 44 H 1.08001 * 120.03226 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2364 -1.1210 0.7649 6 6 3.5491 -0.7765 1.4714 7 7 1.3961 -2.1122 1.4414 8 6 1.6725 -3.4257 1.3195 9 8 2.5597 -3.7925 0.5783 10 6 0.8792 -4.4387 2.1042 11 6 1.3835 -5.8237 1.7906 12 6 2.4006 -6.3766 2.5477 13 6 2.8656 -7.6473 2.2634 14 6 2.3158 -8.3686 1.2216 15 6 1.2946 -7.8164 0.4598 16 8 0.7525 -8.5225 -0.5651 17 6 1.3293 -9.7031 -0.8675 18 1 2.1302 -10.0861 -0.2526 19 6 0.8940 -10.4256 -1.9681 20 7 1.4572 -11.5772 -2.2634 21 14 -0.4908 -9.7629 -3.0321 22 1 0.0771 -8.9250 -4.1186 23 1 -1.2458 -10.8963 -3.6244 24 1 -1.4050 -8.9407 -2.1993 25 6 0.8257 -6.5419 0.7515 26 1 -0.3633 0.0772 1.0247 27 1 -0.3633 0.8489 -0.5793 28 1 -0.3634 -0.9261 -0.4456 29 1 3.1824 1.3085 -0.4455 30 1 1.5812 2.0743 -0.5792 31 1 2.2772 1.7413 1.0248 32 1 3.1715 -0.8751 -1.2683 33 1 1.6116 -1.8589 -1.2681 34 1 4.1457 -1.6809 1.5907 35 1 4.1034 -0.0517 0.8751 36 1 3.3335 -0.3515 2.4516 37 1 0.6408 -1.8232 1.9769 38 1 0.9940 -4.2432 3.1703 39 1 -0.1738 -4.3648 1.8326 40 1 2.8325 -5.8144 3.3625 41 1 3.6602 -8.0761 2.8561 42 1 2.6797 -9.3609 0.9998 43 1 1.1529 -12.0825 -3.0336 44 1 0.0287 -6.1114 0.1634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856138522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:37 Heat of formation + Delta-G solvation = -21.657928 kcal Electronic energy + Delta-G solvation = -24268.822198 eV Core-core repulsion = 20766.500938 eV Total energy + Delta-G solvation = -3502.321259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.35923 -39.17879 -38.15394 -36.50681 -33.46473 -32.37821 -32.01825 -30.31947 -29.37723 -28.27202 -27.29904 -26.86742 -25.11548 -22.36747 -21.63241 -20.65092 -19.76315 -19.05401 -17.65989 -17.10074 -16.81343 -16.05884 -15.53052 -15.14744 -14.88186 -14.33926 -14.20380 -14.09837 -13.85149 -13.67024 -13.45101 -13.28128 -12.99852 -12.71322 -12.60555 -12.49583 -12.36978 -12.31618 -12.13969 -11.91813 -11.66102 -11.43294 -11.26170 -10.79599 -10.72439 -10.71400 -10.36073 -10.11746 -9.94462 -9.52715 -9.33522 -9.07451 -8.82025 -8.09112 -7.30286 -6.36056 -4.02572 2.05788 2.34170 2.78567 3.03535 3.25376 3.29820 3.42309 3.43754 4.28535 4.35745 4.42995 4.50485 4.63106 4.73875 4.77770 4.96664 5.15539 5.18260 5.26340 5.28200 5.37557 5.44256 5.50091 5.56320 5.57863 5.61255 5.62463 5.67925 5.73473 5.75587 5.82384 5.89193 6.02108 6.05717 6.17085 6.30448 6.53570 6.58286 6.84196 7.15288 7.26601 7.36971 7.48259 7.66698 7.86458 8.09959 8.36281 8.99661 9.62897 10.71937 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.003267 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.760267 B = 8569.113266 C = 9500.425669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.127 4.127 3 C -0.113 4.113 4 C -0.152 4.152 5 C 0.106 3.894 6 C -0.120 4.120 7 N -0.709 5.709 8 C 0.515 3.485 9 O -0.509 6.509 10 C -0.094 4.094 11 C -0.034 4.034 12 C -0.188 4.188 13 C -0.076 4.076 14 C -0.218 4.218 15 C 0.161 3.839 16 O -0.220 6.220 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.882 5.882 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.174 4.174 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.398 0.602 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 24.520 9.008 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.128 4.128 3 C -0.171 4.171 4 C -0.190 4.190 5 C 0.019 3.981 6 C -0.179 4.179 7 N -0.363 5.363 8 C 0.301 3.699 9 O -0.382 6.382 10 C -0.134 4.134 11 C -0.035 4.035 12 C -0.207 4.207 13 C -0.094 4.094 14 C -0.237 4.237 15 C 0.109 3.891 16 O -0.125 6.125 17 C -0.463 4.463 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.194 4.194 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.233 0.767 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.067 24.062 8.171 25.434 hybrid contribution -0.776 0.091 -0.254 0.821 sum -1.842 24.153 7.917 25.484 Atomic orbital electron populations 1.21307 0.91816 1.02374 1.01727 1.22010 0.95233 0.91444 1.04133 1.21370 1.00137 0.93613 1.01944 1.23507 1.02343 0.99692 0.93468 1.20685 0.93196 0.92523 0.91702 1.21485 0.94458 1.01968 0.99965 1.45375 1.32655 1.05034 1.53210 1.20768 0.84456 0.82253 0.82410 1.90765 1.31327 1.79418 1.36690 1.20594 1.00294 0.91740 1.00738 1.18649 0.96468 0.92694 0.95647 1.20409 1.00663 0.96782 1.02798 1.20734 0.98179 0.94154 0.96355 1.21292 1.01113 1.02321 0.98979 1.18998 0.91435 0.90510 0.88170 1.83567 1.51933 1.32361 1.44687 1.20765 1.19161 0.93412 1.12996 0.87664 1.24450 0.98249 0.94943 0.96374 1.69652 1.41423 1.12847 1.28127 0.86188 0.81783 0.78594 0.80371 1.19914 1.20830 1.18418 1.19928 1.04887 0.93530 1.01013 0.92336 0.91908 0.92138 0.92154 0.91951 0.92068 0.88274 0.88379 0.91507 0.91350 0.92200 0.76675 0.88336 0.88439 0.87775 0.87198 0.85009 0.91139 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.14 37.16 0.34 -0.50 16 2 C -0.13 -1.06 2.70 -154.51 -0.42 -1.47 16 3 C -0.11 -0.73 8.67 37.16 0.32 -0.41 16 4 C -0.15 -1.69 8.83 -26.73 -0.24 -1.92 16 5 C 0.11 1.08 2.26 -131.82 -0.30 0.78 16 6 C -0.12 -1.13 9.45 37.16 0.35 -0.78 16 7 N -0.71 -7.26 4.91 -47.61 -0.23 -7.50 16 8 C 0.51 7.20 7.75 -10.98 -0.09 7.12 16 9 O -0.51 -9.65 15.60 5.56 0.09 -9.56 16 10 C -0.09 -1.19 5.83 -29.03 -0.17 -1.35 16 11 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 12 C -0.19 -3.33 9.70 -39.54 -0.38 -3.71 16 13 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 14 C -0.22 -4.96 9.17 -39.39 -0.36 -5.32 16 15 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 16 O -0.22 -6.04 8.59 0.02 0.00 -6.04 16 17 C -0.39 -11.29 9.95 30.89 0.31 -10.99 16 18 H 0.11 3.13 5.44 -52.49 -0.29 2.84 16 19 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 20 N -0.88 -26.12 13.96 55.48 0.77 -25.35 16 21 Si 0.90 22.31 28.62 -169.99 -4.86 17.45 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.17 -3.65 9.64 -39.40 -0.38 -4.03 16 26 H 0.06 0.35 8.00 -51.93 -0.42 -0.06 16 27 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 28 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 29 H 0.06 0.38 7.24 -51.93 -0.38 0.01 16 30 H 0.06 0.36 7.92 -51.93 -0.41 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 1.04 8.05 -51.93 -0.42 0.63 16 33 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.54 6.78 -51.93 -0.35 0.19 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.40 2.87 8.44 -40.82 -0.34 2.52 16 38 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 39 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 40 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.13 3.12 5.64 -52.49 -0.30 2.82 16 43 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -33.67 367.10 -7.58 -41.25 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.65 Total: 4.38 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.22 Total: -20.15 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.54 Total: -32.84 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.09 Total: -15.61 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.86 Total: 17.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.67 -7.58 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856138522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.588 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds