Wall clock time and date at job start Tue Mar 31 2020 08:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 115.55030 * 2 1 4 4 C 1.52997 * 117.49695 * 214.29553 * 2 1 3 5 5 C 1.52994 * 117.50081 * 145.67322 * 2 1 3 6 6 C 1.53006 * 117.49832 * 359.97156 * 5 2 1 7 7 N 1.46500 * 117.50120 * 214.97969 * 5 2 1 8 8 C 1.34773 * 119.99858 * 66.38203 * 7 5 2 9 9 O 1.21287 * 120.00434 * 355.65623 * 8 7 5 10 10 C 1.50699 * 120.00001 * 175.38017 * 8 7 5 11 11 C 1.50701 * 109.47491 * 180.27612 * 10 8 7 12 12 C 1.38325 * 119.96613 * 89.99607 * 11 10 8 13 13 C 1.38274 * 120.13856 * 180.02562 * 12 11 10 14 14 C 1.38121 * 120.07248 * 359.97438 * 13 12 11 15 15 C 1.38859 * 119.92778 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.07273 * 180.02562 * 15 14 13 17 17 C 1.34829 * 116.99487 * 5.82924 * 16 15 14 18 18 H 1.07997 * 120.00629 * 5.38006 * 17 16 15 19 19 C 1.38659 * 120.00239 * 185.37940 * 17 16 15 20 20 N 1.31558 * 119.99468 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00577 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46924 * 89.99919 * 21 19 17 23 23 H 1.48497 * 109.47317 * 209.99685 * 21 19 17 24 24 H 1.48496 * 109.47160 * 330.00506 * 21 19 17 25 25 C 1.38078 * 119.96508 * 269.72559 * 11 10 8 26 26 H 1.08998 * 109.47359 * 274.32977 * 1 2 3 27 27 H 1.08999 * 109.47527 * 34.32638 * 1 2 3 28 28 H 1.09007 * 109.47369 * 154.32897 * 1 2 3 29 29 H 1.08997 * 109.47185 * 205.67371 * 3 2 1 30 30 H 1.09002 * 109.47072 * 325.67269 * 3 2 1 31 31 H 1.09006 * 109.47018 * 85.66747 * 3 2 1 32 32 H 1.09000 * 117.49710 * 145.01918 * 4 2 1 33 33 H 1.08997 * 117.50009 * 359.97438 * 4 2 1 34 34 H 1.08991 * 109.47696 * 279.75480 * 6 5 2 35 35 H 1.09007 * 109.46886 * 39.75953 * 6 5 2 36 36 H 1.09002 * 109.47242 * 159.75350 * 6 5 2 37 37 H 0.96999 * 120.00202 * 246.38690 * 7 5 2 38 38 H 1.09006 * 109.46676 * 300.27184 * 10 8 7 39 39 H 1.09001 * 109.47329 * 60.27453 * 10 8 7 40 40 H 1.08005 * 119.93498 * 0.02606 * 12 11 10 41 41 H 1.08004 * 119.96586 * 180.02562 * 13 12 11 42 42 H 1.07997 * 120.04179 * 180.02562 * 14 13 12 43 43 H 0.97000 * 120.00394 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.03369 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1212 -0.7647 5 6 2.2364 -1.1207 0.7653 6 6 1.3588 -2.1554 1.4726 7 7 3.4932 -0.7901 1.4416 8 6 3.4929 0.0633 2.4847 9 8 2.4660 0.6184 2.8138 10 6 4.7672 0.3232 3.2460 11 6 4.4965 1.3022 4.3593 12 6 4.1172 0.8416 5.6073 13 6 3.8675 1.7367 6.6312 14 6 3.9967 3.0941 6.4108 15 6 4.3773 3.5596 5.1592 16 8 4.5057 4.8930 4.9395 17 6 4.3676 5.7052 6.0068 18 1 4.2511 5.2841 6.9944 19 6 4.3753 7.0813 5.8365 20 7 4.5179 7.5943 4.6335 21 14 4.1834 8.2066 7.3150 22 1 5.5221 8.5181 7.8771 23 1 3.5175 9.4659 6.8955 24 1 3.3581 7.5305 8.3479 25 6 4.6329 2.6576 4.1342 26 1 -0.3634 0.0776 1.0247 27 1 -0.3634 0.8487 -0.5795 28 1 -0.3634 -0.9263 -0.4452 29 1 3.1822 1.3087 -0.4452 30 1 1.5809 2.0742 -0.5795 31 1 2.2765 1.7417 1.0248 32 1 3.1714 -0.8755 -1.2681 33 1 1.6111 -1.8590 -1.2674 34 1 1.0082 -1.7474 2.4205 35 1 0.5030 -2.3975 0.8424 36 1 1.9400 -3.0586 1.6586 37 1 4.3256 -1.1855 1.1387 38 1 5.1364 -0.6122 3.6665 39 1 5.5155 0.7386 2.5710 40 1 4.0158 -0.2193 5.7823 41 1 3.5718 1.3740 7.6046 42 1 3.8019 3.7927 7.2110 43 1 4.5229 8.5569 4.5141 44 1 4.9337 3.0164 3.1609 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856138523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:41 Heat of formation + Delta-G solvation = -21.698770 kcal Electronic energy + Delta-G solvation = -24582.332914 eV Core-core repulsion = 21080.009884 eV Total energy + Delta-G solvation = -3502.323030 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34475 -39.00349 -37.91681 -36.31563 -33.44743 -32.30750 -31.83698 -30.12817 -29.12328 -28.11761 -27.08935 -26.69027 -25.17956 -22.01337 -21.48463 -20.92176 -20.23233 -18.44624 -17.58711 -16.97634 -16.72105 -15.99478 -15.48730 -14.99752 -14.68419 -14.37313 -14.11397 -14.02949 -13.78422 -13.49971 -13.32392 -13.22996 -12.72527 -12.54968 -12.46659 -12.34026 -12.21663 -12.08402 -11.90163 -11.71384 -11.44356 -11.22106 -11.11627 -10.82611 -10.68306 -10.54163 -10.39503 -10.28743 -9.87234 -9.51173 -9.30122 -8.82760 -8.77399 -7.99294 -7.14984 -6.38515 -3.97383 2.15805 2.46232 2.85491 3.13391 3.17171 3.19201 3.22484 3.50865 4.01828 4.44490 4.54098 4.62041 4.74981 4.98401 5.04206 5.09079 5.20647 5.29219 5.43558 5.50630 5.53358 5.55309 5.57012 5.64927 5.71521 5.73871 5.81902 5.89708 5.93217 5.99812 6.01616 6.07216 6.22477 6.25135 6.40607 6.47454 6.61189 6.72762 6.98680 7.14167 7.33531 7.43260 7.50417 7.56870 7.90179 8.06581 8.45085 9.07341 9.78931 10.79872 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019886 B = 0.003284 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.674199 B = 8523.218981 C = 9280.917643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 C -0.122 4.122 4 C -0.173 4.173 5 C 0.104 3.896 6 C -0.120 4.120 7 N -0.710 5.710 8 C 0.516 3.484 9 O -0.506 6.506 10 C -0.094 4.094 11 C -0.031 4.031 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.175 4.175 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.398 0.602 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -18.819 -8.281 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.105 4.105 3 C -0.179 4.179 4 C -0.211 4.211 5 C 0.016 3.984 6 C -0.178 4.178 7 N -0.363 5.363 8 C 0.303 3.697 9 O -0.379 6.379 10 C -0.134 4.134 11 C -0.032 4.032 12 C -0.215 4.215 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.102 3.898 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.194 4.194 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.233 0.767 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.042 -18.028 -8.314 20.084 hybrid contribution 0.347 0.316 0.585 0.751 sum -2.695 -17.711 -7.728 19.511 Atomic orbital electron populations 1.21350 0.91838 1.01436 1.02439 1.21823 0.95043 0.91846 1.01775 1.21470 0.99026 0.93492 1.03960 1.23658 1.02906 1.02018 0.92504 1.20713 0.88112 0.99658 0.89884 1.21478 0.98327 0.96883 1.01142 1.45391 1.08617 1.48353 1.33921 1.20722 0.91161 0.78092 0.79722 1.90737 1.33994 1.47399 1.65763 1.20599 0.95678 1.00339 0.96820 1.18642 0.99242 0.92179 0.93095 1.20335 1.09555 0.98062 0.93551 1.20672 0.97975 0.92914 0.97760 1.21173 1.09778 0.95757 0.98283 1.19283 0.92296 0.85479 0.92787 1.83990 1.77759 1.10876 1.35772 1.21302 1.52033 0.87001 0.86310 0.89195 1.25270 0.96716 0.96333 0.98227 1.70042 1.46127 1.12658 1.21140 0.85729 0.78707 0.79252 0.79835 1.19940 1.20305 1.19234 1.19930 1.09866 0.91117 0.98484 0.91622 0.92093 0.92680 0.93144 0.92484 0.89981 0.88562 0.88175 0.91443 0.91479 0.92281 0.76720 0.88498 0.88474 0.88029 0.87550 0.85669 0.92131 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 8.72 37.16 0.32 -0.87 16 2 C -0.10 -1.19 2.42 -154.51 -0.37 -1.57 16 3 C -0.12 -1.65 8.86 37.16 0.33 -1.32 16 4 C -0.17 -1.52 9.44 -26.73 -0.25 -1.77 16 5 C 0.10 1.11 2.24 -131.82 -0.30 0.81 16 6 C -0.12 -1.18 9.37 37.16 0.35 -0.83 16 7 N -0.71 -7.62 5.06 -47.61 -0.24 -7.86 16 8 C 0.52 7.44 6.86 -10.99 -0.08 7.36 16 9 O -0.51 -9.58 13.74 5.55 0.08 -9.51 16 10 C -0.09 -1.27 5.83 -29.03 -0.17 -1.44 16 11 C -0.03 -0.57 4.37 -104.65 -0.46 -1.03 16 12 C -0.20 -3.60 9.70 -39.54 -0.38 -3.98 16 13 C -0.07 -1.47 10.04 -39.61 -0.40 -1.86 16 14 C -0.23 -5.29 9.13 -39.39 -0.36 -5.65 16 15 C 0.15 3.92 6.65 -39.10 -0.26 3.66 16 16 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 17 C -0.39 -11.23 9.44 30.89 0.29 -10.94 16 18 H 0.09 2.40 5.30 -52.49 -0.28 2.13 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 21 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 C -0.17 -3.86 9.64 -39.39 -0.38 -4.24 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 28 H 0.05 0.46 7.28 -51.92 -0.38 0.08 16 29 H 0.05 0.63 7.90 -51.93 -0.41 0.22 16 30 H 0.06 0.72 7.92 -51.93 -0.41 0.31 16 31 H 0.08 1.40 5.57 -51.93 -0.29 1.11 16 32 H 0.10 0.78 8.05 -51.93 -0.42 0.37 16 33 H 0.10 0.72 8.05 -51.93 -0.42 0.31 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.55 6.95 -51.92 -0.36 0.19 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.40 3.03 8.83 -40.82 -0.36 2.66 16 38 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 39 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 41 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 42 H 0.13 2.86 5.72 -52.49 -0.30 2.56 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -34.13 363.87 -7.70 -41.83 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.55 Total: 7.22 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -2.21 Total: -22.69 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.52 Total: -33.02 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.13 -7.70 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856138523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.134 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds