Wall clock time and date at job start Tue Mar 31 2020 08:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00283 * 2 1 4 4 H 1.48497 * 109.46980 * 240.00073 * 3 2 1 5 5 H 1.48502 * 109.46684 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46969 * 119.99537 * 3 2 1 7 7 C 1.37878 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00510 * 186.17563 * 7 2 1 9 9 C 1.50699 * 119.99973 * 6.18324 * 7 2 1 10 10 H 1.08996 * 109.47502 * 181.36582 * 9 7 2 11 11 C 1.53005 * 109.46864 * 301.36397 * 9 7 2 12 12 C 1.50699 * 109.47030 * 294.99852 * 11 9 7 13 13 O 1.21280 * 120.00140 * 0.02562 * 12 11 9 14 14 N 1.34778 * 120.00298 * 179.97438 * 12 11 9 15 15 O 1.41596 * 120.00568 * 180.02562 * 14 12 11 16 16 C 1.42894 * 114.00408 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47444 * 179.97438 * 16 15 14 18 18 C 1.53778 * 113.61354 * 85.86429 * 17 16 15 19 19 C 1.54047 * 86.98635 * 140.02191 * 18 17 16 20 20 C 1.53775 * 87.07675 * 334.56690 * 19 18 17 21 21 C 1.50699 * 109.47376 * 61.35820 * 9 7 2 22 22 C 1.38244 * 119.99457 * 91.37488 * 21 9 7 23 23 C 1.38235 * 119.99564 * 179.79199 * 22 21 9 24 24 C 1.38230 * 120.00108 * 0.43793 * 23 22 21 25 25 C 1.38239 * 120.00277 * 359.81300 * 24 23 22 26 26 C 1.38227 * 120.00329 * 271.65044 * 21 9 7 27 27 H 0.96999 * 120.00063 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47201 * 175.00023 * 11 9 7 29 29 H 1.08996 * 109.47370 * 55.00039 * 11 9 7 30 30 H 0.97007 * 119.99407 * 359.97438 * 14 12 11 31 31 H 1.09006 * 109.46933 * 59.99695 * 16 15 14 32 32 H 1.09002 * 109.47272 * 300.00565 * 16 15 14 33 33 H 1.09001 * 112.84728 * 314.66773 * 17 16 15 34 34 H 1.09002 * 113.61451 * 254.61488 * 18 17 16 35 35 H 1.09001 * 113.61444 * 25.51684 * 18 17 16 36 36 H 1.09007 * 113.62154 * 220.02229 * 19 18 17 37 37 H 1.08999 * 113.61808 * 89.11783 * 19 18 17 38 38 H 1.08995 * 113.61706 * 270.87903 * 20 19 18 39 39 H 1.09007 * 113.69326 * 139.98643 * 20 19 18 40 40 H 1.07994 * 120.00010 * 359.97438 * 22 21 9 41 41 H 1.08001 * 119.99819 * 180.27464 * 23 22 21 42 42 H 1.08004 * 120.00011 * 179.83813 * 24 23 22 43 43 H 1.08000 * 120.00070 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00415 * 359.97347 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0798 -1.1968 0.1011 9 6 1.2576 -2.4954 -0.1395 10 1 1.9624 -3.3256 -0.0933 11 6 0.2417 -2.6251 0.9972 12 6 0.9698 -2.7229 2.3130 13 8 2.1819 -2.6914 2.3392 14 7 0.2740 -2.8442 3.4609 15 8 0.9580 -2.9355 4.6973 16 6 0.0965 -3.0596 5.8305 17 6 0.9390 -3.1505 7.1043 18 6 1.3256 -1.7806 7.6863 19 6 1.0599 -2.3874 9.0771 20 6 0.1073 -3.3720 8.3787 21 6 0.5369 -2.5212 -1.4627 22 6 1.1567 -3.0552 -2.5770 23 6 0.4940 -3.0828 -3.7898 24 6 -0.7850 -2.5682 -3.8904 25 6 -1.4029 -2.0294 -2.7772 26 6 -0.7417 -2.0057 -1.5634 27 1 -0.4850 0.8400 0.0004 28 1 -0.3592 -3.5221 0.8469 29 1 -0.4079 -1.7499 1.0056 30 1 -0.6956 -2.8683 3.4401 31 1 -0.5083 -3.9609 5.7302 32 1 -0.5564 -2.1886 5.8877 33 1 1.7803 -3.8368 7.0072 34 1 2.3686 -1.5130 7.5172 35 1 0.6339 -0.9817 7.4191 36 1 0.5570 -1.7051 9.7625 37 1 1.9342 -2.8650 9.5194 38 1 -0.9169 -3.0075 8.3004 39 1 0.1661 -4.3887 8.7673 40 1 2.1575 -3.4535 -2.4993 41 1 0.9765 -3.5040 -4.6594 42 1 -1.3018 -2.5873 -4.8385 43 1 -2.4020 -1.6270 -2.8559 44 1 -1.2244 -1.5849 -0.6938 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856351692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:28 Heat of formation + Delta-G solvation = 11.736822 kcal Electronic energy + Delta-G solvation = -24440.557648 eV Core-core repulsion = 20939.684494 eV Total energy + Delta-G solvation = -3500.873154 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.24481 -38.75515 -37.94663 -36.31677 -34.17974 -31.74784 -31.02457 -29.82260 -28.68397 -27.81271 -25.80854 -25.63668 -22.91087 -22.61808 -21.47433 -20.33876 -19.60087 -19.14741 -17.66256 -16.54263 -16.10091 -15.83334 -15.51552 -15.18698 -14.86297 -14.72116 -13.94604 -13.82384 -13.77678 -13.45467 -12.80701 -12.75285 -12.64047 -12.27597 -12.23682 -11.87866 -11.72050 -11.54632 -11.36463 -10.96615 -10.87254 -10.79858 -10.74790 -10.55622 -10.42879 -10.26491 -10.16908 -9.97989 -9.33375 -9.23302 -8.75899 -8.44825 -8.21283 -7.81667 -7.46321 -6.01124 -4.08525 2.44032 2.51325 2.56174 3.35685 3.36862 3.43926 3.74933 4.34364 4.42073 4.44207 4.53653 4.65771 4.94837 5.08197 5.19622 5.23394 5.26408 5.42849 5.49948 5.55634 5.67648 5.70870 5.79759 5.80076 5.90652 5.91118 6.00117 6.04922 6.30153 6.32890 6.42984 6.54828 6.69505 6.76102 7.09743 7.12778 7.25374 7.40948 7.48467 7.51609 7.67647 7.95639 8.04016 8.14777 8.16665 8.33276 8.89631 9.26448 9.55498 10.93983 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017593 B = 0.003490 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.186159 B = 8020.635879 C = 8906.616383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.472 4.472 8 H 0.061 0.939 9 C 0.089 3.911 10 H 0.040 0.960 11 C -0.126 4.126 12 C 0.534 3.466 13 O -0.510 6.510 14 N -0.614 5.614 15 O -0.155 6.155 16 C 0.044 3.956 17 C -0.105 4.105 18 C -0.135 4.135 19 C -0.142 4.142 20 C -0.130 4.130 21 C -0.031 4.031 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.077 4.077 27 H 0.262 0.738 28 H 0.056 0.944 29 H 0.140 0.860 30 H 0.398 0.602 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 -5.861 9.914 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.070 3.930 10 H 0.058 0.942 11 C -0.167 4.167 12 C 0.323 3.677 13 O -0.381 6.381 14 N -0.320 5.320 15 O -0.158 6.158 16 C -0.034 4.034 17 C -0.124 4.124 18 C -0.173 4.173 19 C -0.180 4.180 20 C -0.168 4.168 21 C -0.032 4.032 22 C -0.148 4.148 23 C -0.160 4.160 24 C -0.171 4.171 25 C -0.162 4.162 26 C -0.095 4.095 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.157 0.843 30 H 0.236 0.764 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.105 -5.677 9.939 12.532 hybrid contribution -0.245 1.128 0.079 1.157 sum -5.350 -4.549 10.018 12.234 Atomic orbital electron populations 1.69496 1.05759 1.26385 1.51583 1.24862 0.94904 0.99089 0.94963 0.86605 0.79741 0.82824 0.78691 1.20295 1.21360 1.20322 1.21001 0.93915 0.89562 1.46472 0.92035 1.17641 0.91870 0.97292 0.86233 0.94196 1.22035 1.01283 1.03758 0.89587 1.21520 0.88821 0.74460 0.82869 1.90631 1.14279 1.47396 1.85775 1.48246 1.07243 1.80405 0.96117 1.90563 1.22758 1.96536 1.05910 1.22908 0.94240 1.00411 0.85864 1.22508 0.99299 0.99273 0.91334 1.23026 1.02509 0.96368 0.95383 1.22855 0.99665 0.98754 0.96714 1.22897 0.98620 1.00033 0.95209 1.20312 0.93154 0.93122 0.96625 1.20926 0.99219 1.01736 0.92938 1.20804 0.95549 1.02637 0.97044 1.20793 0.95963 1.02629 0.97734 1.21085 0.99420 1.01632 0.94073 1.21624 0.94794 0.94954 0.98140 0.92733 0.92563 0.84253 0.76370 0.92666 0.92529 0.88154 0.91007 0.89918 0.91346 0.90100 0.89925 0.91140 0.87536 0.88024 0.88264 0.88023 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.39 7.74 55.43 0.43 -21.97 16 2 C 0.06 1.61 5.14 -17.82 -0.09 1.52 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.47 -12.73 7.27 -34.44 -0.25 -12.98 16 8 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 9 C 0.09 2.13 1.98 -92.92 -0.18 1.95 16 10 H 0.04 0.98 7.89 -51.93 -0.41 0.57 16 11 C -0.13 -2.68 4.22 -27.88 -0.12 -2.80 16 12 C 0.53 11.93 7.72 -10.99 -0.08 11.84 16 13 O -0.51 -13.63 15.39 -12.63 -0.19 -13.83 16 14 N -0.61 -11.16 6.39 31.22 0.20 -10.96 16 15 O -0.15 -2.81 11.11 -29.66 -0.33 -3.14 16 16 C 0.04 0.55 6.05 37.16 0.22 0.77 16 17 C -0.10 -1.14 4.00 -89.81 -0.36 -1.50 16 18 C -0.14 -1.45 7.65 -25.78 -0.20 -1.65 16 19 C -0.14 -1.19 8.09 -25.78 -0.21 -1.40 16 20 C -0.13 -1.07 7.64 -25.92 -0.20 -1.27 16 21 C -0.03 -0.71 4.68 -104.62 -0.49 -1.20 16 22 C -0.13 -2.74 9.70 -39.58 -0.38 -3.12 16 23 C -0.14 -2.69 10.05 -39.59 -0.40 -3.09 16 24 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 25 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 26 C -0.08 -1.65 7.56 -39.58 -0.30 -1.95 16 27 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.14 3.10 4.65 -51.93 -0.24 2.85 16 30 H 0.40 5.63 8.54 -40.82 -0.35 5.28 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.89 7.92 -51.93 -0.41 0.47 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.10 1.56 8.06 -52.48 -0.42 1.13 16 43 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.15 3.26 4.97 -52.49 -0.26 3.00 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -30.69 358.63 -10.04 -40.73 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.70 Total: 8.51 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -3.83 Total: -21.31 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.63 Total: -32.93 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.52 Total: -16.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.69 -10.04 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856351692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.468 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds