Wall clock time and date at job start Tue Mar 31 2020 08:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00048 * 2 1 4 4 H 1.48504 * 109.47210 * 265.00711 * 3 2 1 5 5 H 1.48499 * 109.47447 * 25.00588 * 3 2 1 6 6 H 1.48503 * 109.47439 * 145.00714 * 3 2 1 7 7 C 1.37878 * 119.99452 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00401 * 6.44771 * 7 2 1 9 9 C 1.50703 * 119.99510 * 186.44797 * 7 2 1 10 10 H 1.09005 * 109.47557 * 334.62284 * 9 7 2 11 11 C 1.52999 * 109.47275 * 214.62090 * 9 7 2 12 12 C 1.50709 * 109.46837 * 65.36845 * 11 9 7 13 13 O 1.21277 * 119.99842 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99484 * 180.02562 * 12 11 9 15 15 O 1.41606 * 119.99563 * 180.02562 * 14 12 11 16 16 C 1.42898 * 113.99881 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47056 * 179.97438 * 16 15 14 18 18 C 1.53782 * 113.61529 * 85.85755 * 17 16 15 19 19 C 1.54059 * 86.98496 * 140.02149 * 18 17 16 20 20 C 1.53779 * 113.61768 * 183.46780 * 17 16 15 21 21 C 1.50701 * 109.47376 * 94.62384 * 9 7 2 22 22 C 1.38235 * 119.99841 * 56.35414 * 21 9 7 23 23 C 1.38239 * 119.99914 * 179.79428 * 22 21 9 24 24 C 1.38231 * 119.99907 * 0.43679 * 23 22 21 25 25 C 1.38242 * 120.00106 * 359.81539 * 24 23 22 26 26 C 1.38231 * 120.00111 * 236.63472 * 21 9 7 27 27 H 0.97002 * 119.99885 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47032 * 305.37561 * 11 9 7 29 29 H 1.08994 * 109.47328 * 185.36675 * 11 9 7 30 30 H 0.96999 * 120.00993 * 0.02562 * 14 12 11 31 31 H 1.08991 * 109.47668 * 59.99924 * 16 15 14 32 32 H 1.09003 * 109.47140 * 299.99335 * 16 15 14 33 33 H 1.09008 * 112.85098 * 314.66570 * 17 16 15 34 34 H 1.08996 * 113.61945 * 254.61773 * 18 17 16 35 35 H 1.09000 * 113.61405 * 25.51881 * 18 17 16 36 36 H 1.08998 * 113.62002 * 220.02683 * 19 18 17 37 37 H 1.09002 * 113.61172 * 89.11991 * 19 18 17 38 38 H 1.09002 * 113.61362 * 334.48445 * 20 17 16 39 39 H 1.09001 * 113.61350 * 105.29983 * 20 17 16 40 40 H 1.08003 * 120.00315 * 359.97438 * 22 21 9 41 41 H 1.07995 * 119.99919 * 180.27818 * 23 22 21 42 42 H 1.08000 * 120.00501 * 179.83844 * 24 23 22 43 43 H 1.07997 * 119.99897 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00301 * 359.97036 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6021 1.9854 -1.3948 5 1 1.3978 2.6808 0.5918 6 1 3.4899 1.4729 0.8029 7 6 2.0044 -1.1941 0.0005 8 1 1.4695 -2.1265 -0.1041 9 6 3.5043 -1.1982 0.1471 10 1 3.9063 -0.2476 -0.2035 11 6 4.0948 -2.3391 -0.6838 12 6 3.8457 -2.0763 -2.1467 13 8 3.2546 -1.0748 -2.4908 14 7 4.2800 -2.9542 -3.0725 15 8 4.0465 -2.7069 -4.4471 16 6 4.5601 -3.7192 -5.3152 17 6 4.2515 -3.3502 -6.7676 18 6 5.3021 -2.4253 -7.4047 19 6 5.1433 -3.2633 -8.6875 20 6 4.6897 -4.4201 -7.7815 21 6 3.8669 -1.3928 1.5968 22 6 3.3999 -2.4978 2.2838 23 6 3.7360 -2.6785 3.6124 24 6 4.5316 -1.7496 4.2566 25 6 4.9943 -0.6419 3.5711 26 6 4.6616 -0.4634 2.2413 27 1 -0.4850 0.8401 0.0004 28 1 3.6224 -3.2790 -0.3980 29 1 5.1679 -2.4022 -0.5035 30 1 4.7525 -3.7554 -2.7973 31 1 4.0925 -4.6743 -5.0762 32 1 5.6389 -3.7993 -5.1816 33 1 3.2260 -3.0086 -6.9089 34 1 4.9680 -1.3933 -7.5114 35 1 6.2890 -2.5067 -6.9493 36 1 6.0844 -3.4556 -9.2029 37 1 4.3617 -2.8981 -9.3537 38 1 5.5095 -5.0460 -7.4290 39 1 3.8616 -4.9985 -8.1912 40 1 2.7749 -3.2214 1.7816 41 1 3.3749 -3.5441 4.1478 42 1 4.7920 -1.8894 5.2954 43 1 5.6155 0.0841 4.0745 44 1 5.0231 0.4020 1.7058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856351693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:31 Heat of formation + Delta-G solvation = 8.257181 kcal Electronic energy + Delta-G solvation = -24176.563512 eV Core-core repulsion = 20675.539470 eV Total energy + Delta-G solvation = -3501.024043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.35668 -38.97644 -38.24929 -36.48199 -34.05439 -32.04684 -31.51515 -30.20555 -29.06954 -28.05460 -25.87261 -25.68785 -22.98366 -22.65254 -21.88016 -20.55999 -19.62966 -19.18827 -17.77197 -16.94962 -16.56696 -16.05158 -15.80748 -15.30267 -14.87484 -14.61146 -14.34670 -14.00238 -13.91159 -13.59772 -12.98412 -12.75216 -12.70877 -12.55422 -12.50686 -12.29405 -11.95625 -11.89945 -11.83080 -11.14774 -10.93929 -10.85742 -10.73976 -10.61925 -10.54446 -10.35701 -10.33038 -9.89284 -9.59266 -9.21348 -8.99208 -8.44178 -8.34847 -8.20155 -7.82954 -5.96761 -3.94069 2.08896 2.11809 2.32479 3.45494 3.46538 3.50361 3.57563 4.26451 4.35583 4.46109 4.52696 4.59138 4.60511 4.96049 5.09519 5.14038 5.28577 5.34947 5.43754 5.48416 5.52222 5.53572 5.55707 5.63551 5.65769 5.68534 5.83762 5.87439 5.94000 5.98365 6.06253 6.23365 6.24175 6.30832 6.53696 6.68321 6.82137 6.98999 7.14568 7.24357 7.27548 7.56711 7.71695 7.82184 7.86527 8.53377 9.01079 9.03975 9.68172 11.16081 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.003410 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.570554 B = 8210.358552 C = 9104.441737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.087 3.913 3 Si 0.872 3.128 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.072 0.928 9 C 0.057 3.943 10 H 0.051 0.949 11 C -0.103 4.103 12 C 0.522 3.478 13 O -0.481 6.481 14 N -0.615 5.615 15 O -0.149 6.149 16 C 0.043 3.957 17 C -0.105 4.105 18 C -0.135 4.135 19 C -0.142 4.142 20 C -0.130 4.130 21 C -0.038 4.038 22 C -0.101 4.101 23 C -0.127 4.127 24 C -0.149 4.149 25 C -0.126 4.126 26 C -0.135 4.135 27 H 0.262 0.738 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.397 0.603 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.710 -10.070 -7.275 18.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.116 4.116 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.037 3.963 10 H 0.069 0.931 11 C -0.144 4.144 12 C 0.309 3.691 13 O -0.349 6.349 14 N -0.321 5.321 15 O -0.152 6.152 16 C -0.034 4.034 17 C -0.125 4.125 18 C -0.173 4.173 19 C -0.180 4.180 20 C -0.168 4.168 21 C -0.039 4.039 22 C -0.120 4.120 23 C -0.146 4.146 24 C -0.167 4.167 25 C -0.144 4.144 26 C -0.153 4.153 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.236 0.764 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.962 -8.987 -7.601 17.509 hybrid contribution 0.530 0.282 0.023 0.601 sum 13.492 -8.705 -7.578 17.755 Atomic orbital electron populations 1.69892 1.06462 1.26935 1.50117 1.24881 0.94493 0.98916 0.93287 0.86947 0.80351 0.83748 0.78976 1.19678 1.22223 1.18511 1.20582 0.87711 0.94666 1.49933 0.90972 1.18133 0.98000 0.93975 0.86186 0.93056 1.21670 1.00902 1.03101 0.88745 1.21121 0.78625 0.82853 0.86469 1.90766 1.37133 1.26697 1.80326 1.48095 1.63238 1.26920 0.93887 1.90608 1.79566 1.42524 1.02510 1.22938 0.98281 0.92270 0.89957 1.22528 1.01088 0.98092 0.90795 1.23027 0.99003 0.99090 0.96159 1.22855 1.01597 0.96966 0.96556 1.22899 1.01225 0.96292 0.96340 1.20687 0.91731 0.92670 0.98831 1.20967 0.98808 0.98363 0.93813 1.21048 0.99148 0.99133 0.95227 1.20867 1.00864 0.95906 0.99078 1.20968 1.00893 0.97733 0.94840 1.21156 0.99665 0.99631 0.94885 0.92794 0.89255 0.90811 0.76422 0.92443 0.92573 0.87956 0.90982 0.90024 0.91335 0.90018 0.89956 0.91037 0.86212 0.87180 0.87433 0.87364 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 2 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 3 Si 0.87 23.01 27.04 -169.99 -4.60 18.42 16 4 H -0.27 -7.41 7.11 56.52 0.40 -7.01 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.26 -6.30 5.14 56.52 0.29 -6.01 16 7 C -0.49 -13.58 6.94 -34.44 -0.24 -13.82 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 9 C 0.06 1.28 1.28 -92.92 -0.12 1.16 16 10 H 0.05 1.25 4.79 -51.93 -0.25 1.00 16 11 C -0.10 -1.89 4.94 -27.88 -0.14 -2.02 16 12 C 0.52 10.70 7.73 -10.98 -0.08 10.62 16 13 O -0.48 -12.66 15.40 -12.63 -0.19 -12.85 16 14 N -0.62 -9.95 6.39 31.22 0.20 -9.75 16 15 O -0.15 -2.53 11.11 -29.66 -0.33 -2.86 16 16 C 0.04 0.49 6.05 37.16 0.22 0.72 16 17 C -0.11 -1.09 4.00 -89.81 -0.36 -1.45 16 18 C -0.14 -1.30 7.65 -25.77 -0.20 -1.50 16 19 C -0.14 -1.10 8.09 -25.77 -0.21 -1.30 16 20 C -0.13 -1.00 7.64 -25.92 -0.20 -1.20 16 21 C -0.04 -0.80 4.77 -104.63 -0.50 -1.30 16 22 C -0.10 -1.94 8.87 -39.58 -0.35 -2.29 16 23 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 24 C -0.15 -2.39 10.05 -39.58 -0.40 -2.79 16 25 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 26 C -0.14 -2.63 9.13 -39.59 -0.36 -2.99 16 27 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 28 H 0.09 1.47 7.80 -51.93 -0.41 1.07 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.40 4.56 8.54 -40.82 -0.35 4.22 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 33 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.75 7.92 -51.93 -0.41 0.33 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.12 2.24 7.77 -52.48 -0.41 1.83 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 43 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.11 2.16 6.95 -52.49 -0.37 1.79 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -35.62 363.24 -9.41 -45.02 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.91 Total: 4.82 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -3.82 Total: -20.74 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.97 Total: -37.28 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.52 Total: -15.71 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.60 Total: 18.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.62 -9.41 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856351693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.279 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds