Wall clock time and date at job start Tue Mar 31 2020 08:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86795 * 119.99875 * 2 1 4 4 H 1.48497 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47474 * 299.99848 * 3 2 1 6 6 H 1.48509 * 109.47164 * 59.99882 * 3 2 1 7 7 C 1.40269 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99589 * 169.18994 * 7 2 1 9 9 C 1.40888 * 120.00619 * 349.18926 * 7 2 1 10 10 C 1.40710 * 120.32669 * 331.73960 * 9 7 2 11 11 C 1.37597 * 119.88277 * 180.29933 * 10 9 7 12 12 C 1.38827 * 120.56834 * 359.67405 * 11 10 9 13 13 C 1.38220 * 120.67733 * 0.02562 * 12 11 10 14 14 C 1.39226 * 120.08929 * 0.02562 * 13 12 11 15 15 C 1.47438 * 120.28095 * 180.02562 * 14 13 12 16 16 O 1.21601 * 120.00059 * 131.48435 * 15 14 13 17 17 N 1.34781 * 119.99903 * 311.48311 * 15 14 13 18 18 C 1.47607 * 118.64430 * 354.62933 * 17 15 14 19 19 C 1.53947 * 112.13486 * 222.12926 * 18 17 15 20 20 C 1.50880 * 110.09786 * 40.56757 * 19 18 17 21 21 C 1.52572 * 109.35165 * 268.10546 * 20 19 18 22 22 H 1.09002 * 108.51192 * 323.75979 * 21 20 19 23 23 C 1.53003 * 108.38625 * 206.18178 * 21 20 19 24 24 O 1.42906 * 109.46757 * 170.31401 * 23 21 20 25 25 C 1.47087 * 114.32630 * 85.01999 * 21 20 19 26 26 C 1.44574 * 118.64173 * 174.62286 * 17 15 14 27 27 H 0.96998 * 120.00357 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.05743 * 359.97398 * 10 9 7 29 29 H 1.08001 * 119.71384 * 179.70247 * 11 10 9 30 30 H 1.07997 * 119.65866 * 180.02562 * 12 11 10 31 31 H 1.07994 * 119.95671 * 180.02562 * 13 12 11 32 32 H 1.08998 * 108.94659 * 101.44585 * 18 17 15 33 33 H 1.08998 * 108.87748 * 342.76233 * 18 17 15 34 34 H 1.08997 * 109.37140 * 280.36863 * 19 18 17 35 35 H 1.09002 * 109.36369 * 160.75703 * 19 18 17 36 36 H 1.09000 * 109.48979 * 148.13963 * 20 19 18 37 37 H 1.09000 * 109.48977 * 28.06685 * 20 19 18 38 38 H 1.09000 * 109.47098 * 290.31045 * 23 21 20 39 39 H 1.09001 * 109.47125 * 50.31212 * 23 21 20 40 40 H 0.96693 * 113.99514 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.33168 * 57.45295 * 25 21 20 42 42 H 1.09001 * 109.33212 * 176.94041 * 25 21 20 43 43 H 1.08996 * 109.45567 * 329.23740 * 26 17 15 44 44 H 1.09001 * 109.44732 * 209.31334 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7002 1.3464 0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8815 2.3965 1.2126 7 6 2.0076 -1.2148 0.0005 8 1 3.0733 -1.2232 -0.1749 9 6 1.3220 -2.4240 0.2299 10 6 0.1514 -2.4400 1.0105 11 6 -0.5076 -3.6272 1.2338 12 6 -0.0314 -4.8122 0.6895 13 6 1.1127 -4.8224 -0.0860 14 6 1.8020 -3.6374 -0.3288 15 6 3.0225 -3.6433 -1.1559 16 8 3.1518 -2.8348 -2.0549 17 7 3.9951 -4.5449 -0.9154 18 6 3.8627 -5.4329 0.2562 19 6 5.1938 -5.5987 1.0117 20 6 5.9161 -4.2762 1.0858 21 6 6.8608 -4.1486 -0.1055 22 1 7.2793 -5.1316 -0.3221 23 6 8.0049 -3.2105 0.2841 24 8 9.0170 -3.2493 -0.7241 25 6 6.2278 -3.6307 -1.3280 26 6 5.1248 -4.6023 -1.8157 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2263 -1.5229 1.4381 29 1 -1.4031 -3.6370 1.8374 30 1 -0.5604 -5.7355 0.8738 31 1 1.4725 -5.7509 -0.5040 32 1 3.5215 -6.4124 -0.0788 33 1 3.1205 -5.0130 0.9350 34 1 5.8184 -6.3230 0.4890 35 1 4.9941 -5.9585 2.0211 36 1 6.4894 -4.2262 2.0115 37 1 5.1901 -3.4635 1.0628 38 1 7.6247 -2.1933 0.3782 39 1 8.4283 -3.5297 1.2365 40 1 9.7751 -2.6773 -0.5424 41 1 5.7844 -2.6569 -1.1199 42 1 6.9826 -3.5216 -2.1068 43 1 4.8056 -4.3155 -2.8176 44 1 5.5199 -5.6180 -1.8379 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868590149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:33 Heat of formation + Delta-G solvation = -74.487203 kcal Electronic energy + Delta-G solvation = -25927.586534 eV Core-core repulsion = 22422.974425 eV Total energy + Delta-G solvation = -3504.612109 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.92275 -38.10856 -36.86384 -35.99819 -33.89944 -33.36994 -32.28318 -30.08859 -29.57705 -27.61517 -25.62444 -25.42750 -23.67324 -22.17772 -20.96295 -20.66127 -20.05083 -18.34561 -17.35747 -17.19578 -16.36791 -15.89771 -15.42900 -15.04627 -14.72300 -14.44563 -14.25090 -13.87033 -13.73091 -13.33122 -12.93910 -12.83719 -12.67116 -12.47677 -12.05323 -11.96832 -11.72437 -11.56174 -11.17757 -11.04327 -11.01493 -10.85837 -10.65708 -10.58451 -10.46937 -10.39120 -10.23440 -9.96745 -9.90258 -9.65274 -9.28670 -8.60801 -7.95622 -7.50590 -7.43868 -6.80503 -4.42914 2.50237 2.80414 3.06467 3.13546 3.19588 3.70926 3.92337 4.00575 4.17108 4.60516 4.81963 4.89136 5.07263 5.20117 5.30455 5.38466 5.45117 5.58148 5.64009 5.77632 5.82292 5.85307 5.97163 6.00442 6.08787 6.09416 6.17314 6.26782 6.34845 6.42330 6.44219 6.48918 6.60787 6.66673 6.98116 7.11512 7.22341 7.36647 7.47453 7.55617 7.69094 7.88279 7.97904 8.13054 8.24683 8.55945 8.79077 8.85866 9.29911 10.12089 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.006038 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.378367 B = 4636.173330 C = 6096.430004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.426 4.426 8 H 0.080 0.920 9 C 0.144 3.856 10 C -0.156 4.156 11 C -0.095 4.095 12 C -0.247 4.247 13 C -0.060 4.060 14 C -0.255 4.255 15 C 0.577 3.423 16 O -0.537 6.537 17 N -0.617 5.617 18 C 0.110 3.890 19 C -0.128 4.128 20 C -0.112 4.112 21 C -0.077 4.077 22 H 0.069 0.931 23 C 0.075 3.925 24 O -0.574 6.574 25 C -0.128 4.128 26 C 0.124 3.876 27 H 0.282 0.718 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.375 0.625 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.092 -6.792 3.892 13.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.455 4.455 8 H 0.098 0.902 9 C 0.141 3.859 10 C -0.175 4.175 11 C -0.114 4.114 12 C -0.267 4.267 13 C -0.078 4.078 14 C -0.260 4.260 15 C 0.369 3.631 16 O -0.413 6.413 17 N -0.352 5.352 18 C -0.012 4.012 19 C -0.166 4.166 20 C -0.150 4.150 21 C -0.096 4.096 22 H 0.087 0.913 23 C -0.002 4.002 24 O -0.379 6.379 25 C -0.167 4.167 26 C 0.000 4.000 27 H 0.093 0.907 28 H 0.142 0.858 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.221 0.779 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.550 -6.623 3.112 12.840 hybrid contribution 0.659 1.067 0.272 1.283 sum 11.209 -5.556 3.385 12.960 Atomic orbital electron populations 1.69708 1.07651 1.29372 1.34604 1.25981 0.94798 1.01538 0.92067 0.86176 0.81053 0.80563 0.78527 1.18313 1.19717 1.19718 1.19640 0.96350 0.90199 1.39317 0.90190 1.17398 0.90590 0.90765 0.87176 1.21419 0.98094 0.96781 1.01240 1.20798 0.98143 0.93395 0.99088 1.20266 1.00701 0.96806 1.08880 1.20619 0.95367 0.95134 0.96727 1.19438 1.00748 0.95328 1.10442 1.18611 0.82705 0.78519 0.83241 1.90680 1.80270 1.37652 1.32722 1.47746 1.21619 1.38270 1.27552 1.22017 0.97634 0.93615 0.87982 1.21733 0.96911 0.97402 1.00572 1.21080 0.98422 0.98907 0.96598 1.20095 0.94188 0.99164 0.96131 0.91275 1.22472 0.88738 0.99349 0.89664 1.86482 1.32931 1.69918 1.48544 1.21200 0.98007 1.00327 0.97152 1.21200 0.86429 0.98243 0.94089 0.90694 0.85823 0.89210 0.89209 0.89045 0.92908 0.88539 0.92060 0.90852 0.92111 0.90575 0.93586 0.94014 0.77908 0.91375 0.90845 0.90501 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.38 10.81 55.56 0.60 -19.78 16 2 C 0.07 1.91 5.26 -17.30 -0.09 1.82 16 3 Si 0.91 19.38 29.58 -169.99 -5.03 14.36 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.43 -11.53 7.90 -37.82 -0.30 -11.83 16 8 H 0.08 2.21 7.00 -52.48 -0.37 1.84 16 9 C 0.14 3.81 5.58 -106.54 -0.59 3.22 16 10 C -0.16 -3.93 8.66 -38.88 -0.34 -4.27 16 11 C -0.10 -2.14 10.01 -39.60 -0.40 -2.54 16 12 C -0.25 -5.23 10.03 -39.37 -0.39 -5.62 16 13 C -0.06 -1.28 7.66 -39.22 -0.30 -1.58 16 14 C -0.25 -6.16 4.69 -104.37 -0.49 -6.65 16 15 C 0.58 13.37 6.44 -12.51 -0.08 13.29 16 16 O -0.54 -14.34 15.29 5.28 0.08 -14.26 16 17 N -0.62 -11.20 2.24 -173.80 -0.39 -11.59 16 18 C 0.11 1.67 4.74 -2.94 -0.01 1.66 16 19 C -0.13 -1.55 5.71 -27.30 -0.16 -1.71 16 20 C -0.11 -1.47 4.93 -28.01 -0.14 -1.61 16 21 C -0.08 -1.01 1.89 -93.67 -0.18 -1.19 16 22 H 0.07 0.88 7.36 -51.93 -0.38 0.49 16 23 C 0.08 0.89 6.28 37.16 0.23 1.12 16 24 O -0.57 -6.68 12.96 -35.23 -0.46 -7.13 16 25 C -0.13 -1.99 4.88 -28.58 -0.14 -2.13 16 26 C 0.12 2.01 5.34 -4.08 -0.02 1.99 16 27 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 28 H 0.12 3.20 6.18 -52.48 -0.32 2.87 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.09 1.73 7.03 -52.49 -0.37 1.36 16 32 H 0.05 0.72 7.78 -51.93 -0.40 0.32 16 33 H 0.10 1.66 5.49 -51.93 -0.29 1.37 16 34 H 0.06 0.67 7.32 -51.93 -0.38 0.29 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.68 7.64 -51.93 -0.40 0.29 16 37 H 0.08 1.24 7.48 -51.93 -0.39 0.85 16 38 H 0.05 0.57 8.13 -51.93 -0.42 0.14 16 39 H 0.04 0.42 7.82 -51.93 -0.41 0.01 16 40 H 0.37 2.62 9.12 45.56 0.42 3.04 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.11 7.52 -51.93 -0.39 0.72 16 43 H 0.08 1.36 7.39 -51.93 -0.38 0.98 16 44 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -30.66 344.17 -9.13 -39.78 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.73 Total: 9.47 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -3.39 Total: -16.03 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: 0.21 Total: -31.37 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.38 Total: -21.40 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.66 -9.13 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868590149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.703 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds