Wall clock time and date at job start Tue Mar 31 2020 07:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99572 * 2 1 4 4 H 1.48499 * 109.47482 * 270.00161 * 3 2 1 5 5 H 1.48506 * 109.47233 * 30.00251 * 3 2 1 6 6 H 1.48499 * 109.46972 * 149.99724 * 3 2 1 7 7 C 1.38808 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99805 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00039 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99571 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.46532 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47568 * 300.00316 * 10 9 7 13 13 C 1.50703 * 109.46891 * 295.00432 * 12 10 9 14 14 C 1.38239 * 120.00099 * 269.72032 * 13 12 10 15 15 C 1.38233 * 120.00013 * 179.76738 * 14 13 12 16 16 C 1.38230 * 120.00186 * 0.50930 * 15 14 13 17 17 C 1.38237 * 119.99947 * 359.74952 * 16 15 14 18 18 C 1.38234 * 120.00018 * 359.97438 * 17 16 15 19 19 C 1.50696 * 109.47306 * 60.00803 * 10 9 7 20 20 O 1.20823 * 119.99812 * 339.99208 * 19 10 9 21 21 O 1.34230 * 120.00194 * 159.99912 * 19 10 9 22 22 C 1.45201 * 117.00165 * 179.97438 * 21 19 10 23 23 C 1.55238 * 110.46603 * 264.80682 * 22 21 19 24 24 C 1.54894 * 102.58338 * 203.39122 * 23 22 21 25 25 C 1.54266 * 104.31305 * 37.93170 * 24 23 22 26 26 C 1.53869 * 106.60031 * 336.32486 * 25 24 23 27 27 H 0.96997 * 120.00130 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00060 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47237 * 54.99891 * 12 10 9 30 30 H 1.08996 * 109.47480 * 175.00807 * 12 10 9 31 31 H 1.08000 * 119.99740 * 0.02562 * 14 13 12 32 32 H 1.08003 * 119.99868 * 180.23671 * 15 14 13 33 33 H 1.08004 * 120.00400 * 179.72087 * 16 15 14 34 34 H 1.08002 * 120.00345 * 179.97438 * 17 16 15 35 35 H 1.07998 * 120.00257 * 179.97438 * 18 17 16 36 36 H 1.09007 * 110.43098 * 27.45710 * 22 21 19 37 37 H 1.08996 * 110.89448 * 85.10686 * 23 22 21 38 38 H 1.08993 * 110.76342 * 321.62352 * 23 22 21 39 39 H 1.09002 * 110.48891 * 279.18596 * 24 23 22 40 40 H 1.08998 * 110.48494 * 156.67683 * 24 23 22 41 41 H 1.09001 * 110.03084 * 95.60669 * 25 24 23 42 42 H 1.08996 * 110.03108 * 216.98559 * 25 24 23 43 43 H 1.08999 * 110.04012 * 119.28327 * 26 25 24 44 44 H 1.09006 * 110.02998 * 240.67078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 5.1839 -2.2714 0.0000 12 6 3.7431 -3.2728 1.2495 13 6 4.2182 -2.5381 2.4765 14 6 5.4815 -2.7817 2.9822 15 6 5.9190 -2.1042 4.1049 16 6 5.0894 -1.1909 4.7282 17 6 3.8241 -0.9512 4.2257 18 6 3.3887 -1.6245 3.0996 19 6 3.7479 -3.2611 -1.2302 20 8 2.7279 -3.0122 -1.8280 21 8 4.5564 -4.2418 -1.6617 22 6 4.1421 -4.9617 -2.8527 23 6 3.3802 -6.2578 -2.4660 24 6 3.5639 -7.1448 -3.7225 25 6 5.0052 -6.8523 -4.1883 26 6 5.3728 -5.4643 -3.6353 27 1 -0.4850 0.8400 0.0004 28 1 3.8647 -0.3619 -0.0004 29 1 2.6611 -3.3957 1.2958 30 1 4.2186 -4.2526 1.2059 31 1 6.1281 -3.4982 2.4976 32 1 6.9075 -2.2917 4.4977 33 1 5.4296 -0.6649 5.6080 34 1 3.1757 -0.2380 4.7128 35 1 2.4000 -1.4376 2.7072 36 1 3.5215 -4.3264 -3.4847 37 1 2.3246 -6.0505 -2.2905 38 1 3.8335 -6.7264 -1.5926 39 1 2.8487 -6.8641 -4.4956 40 1 3.4525 -8.1982 -3.4654 41 1 5.6861 -7.6049 -3.7907 42 1 5.0514 -6.8455 -5.2773 43 1 6.2321 -5.5432 -2.9694 44 1 5.5980 -4.7831 -4.4560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879179019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:38 Heat of formation + Delta-G solvation = -56.453151 kcal Electronic energy + Delta-G solvation = -25100.094885 eV Core-core repulsion = 21596.264791 eV Total energy + Delta-G solvation = -3503.830093 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.03093 -38.85299 -37.65030 -35.64011 -34.82677 -32.47091 -30.84832 -30.40731 -28.80285 -28.64719 -27.59569 -24.67720 -22.99162 -22.08284 -21.06920 -20.59435 -20.13880 -19.52397 -18.26997 -16.88589 -16.34807 -16.04035 -15.36349 -15.18705 -15.03104 -14.68452 -14.36333 -14.12022 -13.90309 -13.44029 -13.01651 -12.95671 -12.75149 -12.59240 -12.37505 -12.01047 -11.80136 -11.68090 -11.42590 -11.31148 -11.16950 -10.96701 -10.78117 -10.63887 -10.61538 -10.52627 -10.38034 -10.26954 -9.95370 -9.76952 -9.27693 -9.01914 -8.46822 -8.23838 -7.42491 -5.76358 -3.13587 1.76507 1.87456 3.05636 3.19270 3.38026 3.40642 3.45473 4.25408 4.52504 4.56319 4.57726 4.80765 5.07650 5.19209 5.28944 5.34133 5.37228 5.39704 5.41722 5.45446 5.51923 5.55538 5.56736 5.71039 5.76154 5.79976 5.87695 5.91177 5.95367 5.97690 6.02805 6.16134 6.20337 6.22936 6.25132 6.38604 6.55459 6.67436 6.84861 7.01827 7.14995 7.23198 7.50123 7.91216 8.36879 8.66889 9.13994 9.84311 9.97593 11.40814 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.005046 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.304021 B = 5547.451972 C = 7236.703686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.872 3.128 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.228 4.228 8 H 0.098 0.902 9 N -0.716 5.716 10 C 0.202 3.798 11 H 0.088 0.912 12 C -0.086 4.086 13 C -0.061 4.061 14 C -0.125 4.125 15 C -0.132 4.132 16 C -0.133 4.133 17 C -0.127 4.127 18 C -0.084 4.084 19 C 0.425 3.575 20 O -0.469 6.469 21 O -0.366 6.366 22 C 0.078 3.922 23 C -0.138 4.138 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.122 4.122 27 H 0.259 0.741 28 H 0.370 0.630 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.046 -11.136 0.651 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.184 4.184 3 Si 0.702 3.298 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.357 4.357 8 H 0.116 0.884 9 N -0.356 5.356 10 C 0.087 3.913 11 H 0.106 0.894 12 C -0.125 4.125 13 C -0.061 4.061 14 C -0.143 4.143 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.145 4.145 18 C -0.102 4.102 19 C 0.262 3.738 20 O -0.351 6.351 21 O -0.284 6.284 22 C 0.023 3.977 23 C -0.176 4.176 24 C -0.161 4.161 25 C -0.158 4.158 26 C -0.159 4.159 27 H 0.069 0.931 28 H 0.204 0.796 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.441 -11.087 0.427 16.670 hybrid contribution 0.417 1.399 -0.304 1.491 sum 12.859 -9.688 0.123 16.101 Atomic orbital electron populations 1.69689 1.05020 1.25678 1.56908 1.24602 0.95095 0.96762 1.01908 0.86747 0.79537 0.85678 0.77815 1.21235 1.21642 1.20013 1.18974 0.79687 0.94970 1.42078 0.88409 1.42733 1.04879 1.00806 1.87187 1.19709 0.96611 0.86791 0.88186 0.89363 1.20957 1.03201 0.96793 0.91544 1.19669 0.93708 0.96986 0.95717 1.21023 0.95852 1.00502 0.96886 1.20955 0.99294 0.97945 0.96852 1.21032 0.94748 0.99129 1.00159 1.21190 0.96136 1.00065 0.97117 1.21443 1.01184 0.93943 0.93582 1.26068 0.82238 0.77823 0.87647 1.90707 1.24588 1.64162 1.55649 1.86659 1.52188 1.46486 1.43098 1.23554 0.96004 0.92240 0.85937 1.22916 1.01034 0.95206 0.98446 1.22274 0.96710 0.99660 0.97449 1.22074 0.96881 0.96394 1.00479 1.22193 0.97986 0.96551 0.99205 0.93066 0.79574 0.89489 0.91211 0.86564 0.86945 0.87052 0.86639 0.84223 0.89540 0.90822 0.90515 0.91385 0.91314 0.91509 0.91641 0.90390 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 2 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 3 Si 0.87 21.68 27.73 -169.99 -4.71 16.96 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.35 6.52 56.52 0.37 -5.98 16 7 C -0.23 -6.11 7.48 -15.06 -0.11 -6.22 16 8 H 0.10 2.92 6.84 -52.49 -0.36 2.56 16 9 N -0.72 -16.16 4.41 -54.55 -0.24 -16.40 16 10 C 0.20 3.78 3.19 -69.09 -0.22 3.56 16 11 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 12 C -0.09 -1.46 4.74 -27.88 -0.13 -1.59 16 13 C -0.06 -1.01 4.95 -104.62 -0.52 -1.53 16 14 C -0.12 -1.78 9.70 -39.58 -0.38 -2.17 16 15 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 16 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 17 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 18 C -0.08 -1.51 9.31 -39.58 -0.37 -1.88 16 19 C 0.42 8.44 7.17 36.00 0.26 8.70 16 20 O -0.47 -11.31 13.81 -18.75 -0.26 -11.57 16 21 O -0.37 -6.14 9.95 -39.26 -0.39 -6.53 16 22 C 0.08 1.15 3.23 -24.88 -0.08 1.07 16 23 C -0.14 -1.79 6.66 -24.55 -0.16 -1.96 16 24 C -0.12 -1.25 6.82 -25.07 -0.17 -1.42 16 25 C -0.12 -1.12 6.80 -25.62 -0.17 -1.30 16 26 C -0.12 -1.38 6.57 -25.62 -0.17 -1.55 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.37 8.30 5.89 -40.82 -0.24 8.06 16 29 H 0.09 1.70 7.05 -51.93 -0.37 1.33 16 30 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.11 1.22 8.06 -52.48 -0.42 0.79 16 33 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.14 2.90 7.37 -52.49 -0.39 2.52 16 36 H 0.09 1.45 7.14 -51.93 -0.37 1.08 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -31.89 358.98 -9.75 -41.64 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -6.80 Total: 11.24 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -3.52 Total: -12.91 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.53 Total: -44.24 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.65 Total: -18.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.89 -9.75 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879179019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.816 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds