Wall clock time and date at job start Tue Mar 31 2020 07:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99572 * 2 1 4 4 H 1.48499 * 109.47482 * 270.00161 * 3 2 1 5 5 H 1.48506 * 109.47233 * 30.00251 * 3 2 1 6 6 H 1.48499 * 109.46972 * 149.99724 * 3 2 1 7 7 C 1.38808 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99805 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00039 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99571 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.46532 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47568 * 300.00316 * 10 9 7 13 13 C 1.50703 * 109.46891 * 295.00432 * 12 10 9 14 14 C 1.38239 * 120.00099 * 269.72032 * 13 12 10 15 15 C 1.38233 * 120.00013 * 179.76738 * 14 13 12 16 16 C 1.38230 * 120.00186 * 0.50930 * 15 14 13 17 17 C 1.38237 * 119.99947 * 359.74952 * 16 15 14 18 18 C 1.38234 * 120.00018 * 359.97438 * 17 16 15 19 19 C 1.50696 * 109.47306 * 60.00803 * 10 9 7 20 20 O 1.20823 * 119.99812 * 339.99208 * 19 10 9 21 21 O 1.34230 * 120.00194 * 159.99912 * 19 10 9 22 22 C 1.45201 * 117.00165 * 179.97438 * 21 19 10 23 23 C 1.55238 * 110.46603 * 264.80682 * 22 21 19 24 24 C 1.54894 * 102.58338 * 203.39122 * 23 22 21 25 25 C 1.54266 * 104.31305 * 37.93170 * 24 23 22 26 26 C 1.53869 * 106.60031 * 336.32486 * 25 24 23 27 27 H 0.96997 * 120.00130 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00060 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47237 * 54.99891 * 12 10 9 30 30 H 1.08996 * 109.47480 * 175.00807 * 12 10 9 31 31 H 1.08000 * 119.99740 * 0.02562 * 14 13 12 32 32 H 1.08003 * 119.99868 * 180.23671 * 15 14 13 33 33 H 1.08004 * 120.00400 * 179.72087 * 16 15 14 34 34 H 1.08002 * 120.00345 * 179.97438 * 17 16 15 35 35 H 1.07998 * 120.00257 * 179.97438 * 18 17 16 36 36 H 1.09007 * 110.43098 * 27.45710 * 22 21 19 37 37 H 1.08996 * 110.89448 * 85.10686 * 23 22 21 38 38 H 1.08993 * 110.76342 * 321.62352 * 23 22 21 39 39 H 1.09002 * 110.48891 * 279.18596 * 24 23 22 40 40 H 1.08998 * 110.48494 * 156.67683 * 24 23 22 41 41 H 1.09001 * 110.03084 * 95.60669 * 25 24 23 42 42 H 1.08996 * 110.03108 * 216.98559 * 25 24 23 43 43 H 1.08999 * 110.04012 * 119.28327 * 26 25 24 44 44 H 1.09006 * 110.02998 * 240.67078 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 5.1839 -2.2714 0.0000 12 6 3.7431 -3.2728 1.2495 13 6 4.2182 -2.5381 2.4765 14 6 5.4815 -2.7817 2.9822 15 6 5.9190 -2.1042 4.1049 16 6 5.0894 -1.1909 4.7282 17 6 3.8241 -0.9512 4.2257 18 6 3.3887 -1.6245 3.0996 19 6 3.7479 -3.2611 -1.2302 20 8 2.7279 -3.0122 -1.8280 21 8 4.5564 -4.2418 -1.6617 22 6 4.1421 -4.9617 -2.8527 23 6 3.3802 -6.2578 -2.4660 24 6 3.5639 -7.1448 -3.7225 25 6 5.0052 -6.8523 -4.1883 26 6 5.3728 -5.4643 -3.6353 27 1 -0.4850 0.8400 0.0004 28 1 3.8647 -0.3619 -0.0004 29 1 2.6611 -3.3957 1.2958 30 1 4.2186 -4.2526 1.2059 31 1 6.1281 -3.4982 2.4976 32 1 6.9075 -2.2917 4.4977 33 1 5.4296 -0.6649 5.6080 34 1 3.1757 -0.2380 4.7128 35 1 2.4000 -1.4376 2.7072 36 1 3.5215 -4.3264 -3.4847 37 1 2.3246 -6.0505 -2.2905 38 1 3.8335 -6.7264 -1.5926 39 1 2.8487 -6.8641 -4.4956 40 1 3.4525 -8.1982 -3.4654 41 1 5.6861 -7.6049 -3.7907 42 1 5.0514 -6.8455 -5.2773 43 1 6.2321 -5.5432 -2.9694 44 1 5.5980 -4.7831 -4.4560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879179019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:49:37 Heat of formation + Delta-G solvation = -74.231094 kcal Electronic energy + Delta-G solvation = -25100.865794 eV Core-core repulsion = 21596.264791 eV Total energy + Delta-G solvation = -3504.601003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56310 -40.07794 -38.88014 -37.12231 -36.42964 -34.29507 -32.57478 -31.58428 -30.14166 -29.71027 -28.77385 -26.29514 -24.79372 -23.26860 -22.33567 -21.65705 -21.16112 -21.04309 -20.23695 -18.47973 -17.64417 -17.33343 -16.70468 -16.56285 -16.47049 -16.19636 -15.84362 -15.56334 -15.24218 -14.87661 -14.42666 -14.21009 -14.10509 -13.85088 -13.69109 -13.42604 -13.24006 -13.11689 -12.97388 -12.87044 -12.31277 -12.17552 -12.15200 -12.08677 -11.89769 -11.84288 -11.74830 -11.64941 -11.36325 -11.27216 -11.16104 -10.89250 -9.68513 -9.56367 -9.33798 -7.96497 -5.32057 0.57407 0.68183 1.34063 1.36611 1.43558 1.45005 1.81535 2.48904 3.04490 3.35789 3.43635 3.55730 3.59815 3.80274 3.96425 4.07533 4.14271 4.28428 4.31220 4.35562 4.41440 4.46641 4.49128 4.50439 4.60438 4.66872 4.72390 4.78841 4.85852 4.96562 5.02700 5.04692 5.08384 5.18699 5.20786 5.33126 5.36832 5.42399 5.68247 5.71513 5.78204 5.80281 5.98822 6.21794 6.30464 7.01110 7.09486 7.73322 7.91779 9.24986 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.005046 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.304021 B = 5547.451972 C = 7236.703686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.940 3.060 4 H -0.290 1.290 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.186 4.186 8 H 0.055 0.945 9 N -0.720 5.720 10 C 0.197 3.803 11 H 0.129 0.871 12 C -0.074 4.074 13 C -0.075 4.075 14 C -0.118 4.118 15 C -0.124 4.124 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.113 4.113 19 C 0.433 3.567 20 O -0.522 6.522 21 O -0.353 6.353 22 C 0.065 3.935 23 C -0.140 4.140 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.115 4.115 27 H 0.254 0.746 28 H 0.375 0.625 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.086 -12.504 1.302 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.252 4.252 3 Si 0.768 3.232 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.317 4.317 8 H 0.073 0.927 9 N -0.361 5.361 10 C 0.084 3.916 11 H 0.147 0.853 12 C -0.113 4.113 13 C -0.075 4.075 14 C -0.135 4.135 15 C -0.142 4.142 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.131 4.131 19 C 0.273 3.727 20 O -0.408 6.408 21 O -0.269 6.269 22 C 0.009 3.991 23 C -0.178 4.178 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.153 4.153 27 H 0.063 0.937 28 H 0.209 0.791 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.569 -12.509 1.087 21.595 hybrid contribution -1.066 1.605 -0.476 1.984 sum 16.503 -10.905 0.611 19.790 Atomic orbital electron populations 1.69881 1.07090 1.26093 1.60505 1.25322 0.95871 1.00558 1.03439 0.85629 0.79279 0.80743 0.77504 1.21663 1.22455 1.16797 1.18646 0.81570 0.92986 1.38511 0.92717 1.42587 1.03257 1.02662 1.87628 1.20094 0.98143 0.85431 0.87916 0.85329 1.20808 1.01023 0.98243 0.91272 1.19608 0.95000 0.97200 0.95670 1.21325 0.94630 1.00597 0.96971 1.21424 1.00583 0.96362 0.95799 1.21394 0.93491 0.98944 1.00727 1.21312 0.97628 1.00283 0.96724 1.21195 0.99961 0.96402 0.95557 1.25986 0.81499 0.77993 0.87233 1.90707 1.26853 1.65987 1.57293 1.86597 1.50836 1.45551 1.43949 1.23919 0.98073 0.92123 0.84956 1.22932 0.99211 0.95076 1.00540 1.22283 0.97568 1.00107 0.95675 1.22087 0.96214 0.95336 1.01487 1.22224 0.96255 0.97822 0.98969 0.93741 0.79107 0.93474 0.88081 0.83423 0.83093 0.84050 0.86416 0.88798 0.92448 0.93501 0.89538 0.91757 0.89209 0.89431 0.90077 0.89315 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.01 13.97 21.65 0.30 -64.71 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.94 46.45 27.73 68.60 1.90 48.35 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 6 H -0.24 -10.64 6.52 99.48 0.65 -9.99 16 7 C -0.19 -10.59 7.48 84.03 0.63 -9.96 16 8 H 0.05 3.56 6.84 -2.91 -0.02 3.54 16 9 N -0.72 -33.03 4.41 -326.51 -1.44 -34.47 16 10 C 0.20 7.25 3.19 44.24 0.14 7.39 16 11 H 0.13 3.75 8.14 -2.38 -0.02 3.74 16 12 C -0.07 -2.53 4.74 29.85 0.14 -2.39 16 13 C -0.07 -2.40 4.95 -19.86 -0.10 -2.50 16 14 C -0.12 -2.87 9.70 22.27 0.22 -2.66 16 15 C -0.12 -2.71 10.05 22.27 0.22 -2.49 16 16 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 17 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 18 C -0.11 -4.19 9.31 22.27 0.21 -3.98 16 19 C 0.43 17.44 7.17 71.23 0.51 17.95 16 20 O -0.52 -26.60 13.81 21.97 0.30 -26.29 16 21 O -0.35 -11.49 9.95 -51.42 -0.51 -12.00 16 22 C 0.06 1.88 3.23 31.79 0.10 1.98 16 23 C -0.14 -3.57 6.66 32.01 0.21 -3.36 16 24 C -0.12 -2.17 6.82 31.67 0.22 -1.96 16 25 C -0.11 -1.73 6.80 31.32 0.21 -1.52 16 26 C -0.12 -2.31 6.57 31.32 0.21 -2.11 16 27 H 0.25 16.07 8.31 -92.71 -0.77 15.30 16 28 H 0.37 16.51 5.89 -92.71 -0.55 15.96 16 29 H 0.05 1.97 7.05 -2.39 -0.02 1.96 16 30 H 0.10 2.76 8.08 -2.39 -0.02 2.74 16 31 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.09 4.28 7.37 -2.91 -0.02 4.26 16 36 H 0.06 2.02 7.14 -2.38 -0.02 2.00 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.62 8.07 -2.39 -0.02 1.60 16 44 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -76.45 358.98 4.77 -71.68 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.38 Total: 33.40 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 3.83 Total: -15.95 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -1.14 Total: -99.19 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.21 Total: -38.29 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.90 Total: 48.35 kcal Total: -76.45 4.77 -71.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879179019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.551 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds